LOCUS       NM_001393688            1756 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus NGG1 interacting factor 3 like 1 (Nif3l1),
            transcript variant 1, mRNA.
ACCESSION   NM_001393688 XM_006244961
VERSION     NM_001393688.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Fragoza,R., Das,J., Wierbowski,S.D., Liang,J., Tran,T.N., Liang,S.,
            Beltran,J.F., Rivera-Erick,C.A., Ye,K., Wang,T.Y., Yao,L., Mort,M.,
            Stenson,P.D., Cooper,D.N., Wei,X., Keinan,A., Schimenti,J.C.,
            Clark,A.G. and Yu,H.
  TITLE     Extensive disruption of protein interactions by genetic variants
            across the allele frequency spectrum in human populations
  JOURNAL   Nat Commun 10 (1), 4141 (2019)
   PUBMED   31515488
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Merla,G., Howald,C., Antonarakis,S.E. and Reymond,A.
  TITLE     The subcellular localization of the ChoRE-binding protein, encoded
            by the Williams-Beuren syndrome critical region gene 14, is
            regulated by 14-3-3
  JOURNAL   Hum Mol Genet 13 (14), 1505-1514 (2004)
   PUBMED   15163635
REFERENCE   3  (bases 1 to 1756)
  AUTHORS   Tascou,S., Kang,T.W., Trappe,R., Engel,W. and Burfeind,P.
  TITLE     Identification and characterization of NIF3L1 BP1, a novel
            cytoplasmic interaction partner of the NIF3L1 protein
  JOURNAL   Biochem Biophys Res Commun 309 (2), 440-448 (2003)
   PUBMED   12951069
REFERENCE   4  (bases 1 to 1756)
  AUTHORS   Akiyama,H., Fujisawa,N., Tashiro,Y., Takanabe,N., Sugiyama,A. and
            Tashiro,F.
  TITLE     The role of transcriptional corepressor Nif3l1 in early stage of
            neural differentiation via cooperation with Trip15/CSN2
  JOURNAL   J Biol Chem 278 (12), 10752-10762 (2003)
   PUBMED   12522100
REFERENCE   5  (bases 1 to 1756)
  AUTHORS   Tascou,S., Uedelhoven,J., Dixkens,C., Nayernia,K., Engel,W. and
            Burfeind,P.
  TITLE     Isolation and characterization of a novel human gene, NIF3L1, and
            its mouse ortholog, Nif3l1, highly conserved from bacteria to
            mammals
  JOURNAL   Cytogenet Cell Genet 90 (3-4), 330-336 (2000)
   PUBMED   11124544
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 3, 2021 this sequence version replaced XM_006244961.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097992.1, SRR26360190.2910326.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                JAXUCZ010000009.1  67474372-67474425
            55-181              JAXUCZ010000009.1  67476047-67476173
            182-637             JAXUCZ010000009.1  67476562-67477017
            638-800             JAXUCZ010000009.1  67479464-67479626
            801-927             JAXUCZ010000009.1  67481971-67482097
            928-1066            JAXUCZ010000009.1  67485456-67485594
            1067-1150           JAXUCZ010000009.1  67487693-67487776
            1151-1756           JAXUCZ010000009.1  67493745-67494350
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q31"
     gene            1..1756
                     /gene="Nif3l1"
                     /note="NGG1 interacting factor 3 like 1"
                     /db_xref="GeneID:301431"
                     /db_xref="RGD:1310329"
     exon            1..54
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            55..181
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            182..637
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..1335
                     /gene="Nif3l1"
                     /EC_number="3.5.4.16"
                     /note="isoform 1 is encoded by transcript variant 1;
                     NIF3-like protein 1; Ngg1 interacting factor 3-like 1; GTP
                     cyclohydrolase I; putative GTP cyclohydrolase 1 type 2
                     Nif3l1; NIF3 NGG1 interacting factor 3-like 1"
                     /codon_start=1
                     /product="NIF3-like protein 1 isoform 1"
                     /protein_id="NP_001380617.1"
                     /db_xref="GeneID:301431"
                     /db_xref="RGD:1310329"
                     /translation="MLSSAHVVPTSVRRAPSWICSSSRSFMDLKALLSSLNDFASLSF
                     AESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEALQKKADLILSYHPPIFRPMKHI
                     TWKTWKERLVIRALENRVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNY
                     PTEGTHRLEFSANHSQDLDKVMSAVKGVGGVSVTSFPARCDGEEQTRVSLNCTQKALM
                     QVLAFLSQDRQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMIERIKRHLKLPH
                     LRLALGVGRTLESPVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVI
                     LCEHSNTERGFLSDLQEMLGVHLENKINIILSETDRDPLRVV"
     exon            638..800
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            801..927
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1066
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1150
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1756
                     /gene="Nif3l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggttgtg gaggagagaa aagctcgcgg ggctgtctgt tcttcacgct ggagggtctt
       61 atgtacccca ggctggcctt gaactgacag catagctgac actgcccttg cacctcgtcc
      121 tctactggat cacagacaag tgccagtttc tgtggtgctg gggactaaac ccttgtgcat
      181 ggcaaccttc tacctggttt ccgtatgctg tcatctgcac acgtggtccc tacaagtgtg
      241 cgacgtgccc catcgtggat ctgcagctct tcccgttcct tcatggatct gaaggctctt
      301 ctctcttcct tgaatgactt tgcctccctc tcatttgctg agagctggga caatgtgggg
      361 ttgctggtgg agccaagccc gccccatact gtaaatacac tcttcctgac caatgacctg
      421 acggaggagg tcatggagga ggctctgcaa aagaaggcag atctcattct ctcctaccat
      481 ccacctatct tccggcccat gaagcacata acttggaaga cctggaagga gcgccttgtg
      541 atccgggctc tggagaacag agtcgccatc tactctcccc acacggccta tgacgccgca
      601 ccccagggag tcaacagctg gttggccaaa gggctcggaa cttgcactac caggcccatc
      661 cacccttcca aagctccgaa ctaccccaca gagggaactc accgactaga attcagtgcg
      721 aaccacagcc aagacctgga caaagtcatg tctgctgtga aaggggttgg aggtgtctct
      781 gtcacctctt ttcctgccag gtgtgatggt gaggagcaaa cacgggtcag tctgaattgt
      841 actcagaagg ctttgatgca ggtgctagct tttctctccc aggacagaca actttatcag
      901 aaaactgaaa ttctttcttt ggagaagcct ttgcttctgc atactggaat gggacgcttg
      961 tgcacactgg atgagtctgt ctccctggca acaatgatag aacgaatcaa aagacaccta
     1021 aagctgcctc atcttcgctt agctcttgga gtggggagga ccttagagtc tccagtcaaa
     1081 gttgtggccc tgtgtgctgg ttctgggggc agcgttctac aaggagtaga ggccgacctt
     1141 tacctcacag gtgaaatgtc ccaccatgat gttctggatg ctgcttccaa agggataaat
     1201 gtcatccttt gtgaacacag caacaccgaa agaggcttcc tttctgatct tcaagaaatg
     1261 ctgggtgttc acttggagaa taagattaat attatcctgt ctgagacaga cagggaccct
     1321 ctccgtgtcg tttagaaggc aaggacatta tgacagaagc ctggactgaa caggactgtg
     1381 caggagttgg tacaccaccc ttctgcagaa ctgtaatgaa cttctcattt cagtttgcta
     1441 atctggctca acaaatgtca tagctcagac ggtaaaactg taaagagtac attaaagaca
     1501 aatcttgggg ctggagagat agctcagtgg ttaagagcac tgactgctct tccagaggtc
     1561 ctgagttcaa gtcccagcaa tcacatggtg gctcacagcc atctgtaatg agatctgatg
     1621 ccctcttctg gtgagtctga agacagctac agtgtgctta tatatatata tatatatata
     1681 tatatatata tatatatata tatatatata tgaaatgaaa taaataagta aatctttaaa
     1741 aaagagaaaa gacaaa
//
