LOCUS       XM_039082066             632 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nicolin 1, tubulin polyglutamylase
            complex subunit (Nicn1), transcript variant X2, mRNA.
ACCESSION   XM_039082066
VERSION     XM_039082066.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082066.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..632
                     /gene="Nicn1"
                     /note="nicolin 1, tubulin polyglutamylase complex subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 67 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:619581"
                     /db_xref="RGD:1589574"
     CDS             201..557
                     /gene="Nicn1"
                     /codon_start=1
                     /product="nicolin-1 isoform X2"
                     /protein_id="XP_038937994.1"
                     /db_xref="GeneID:619581"
                     /db_xref="RGD:1589574"
                     /translation="MLCDMNRILELRLILRQPSPLWLSFSVEELQIYQQGPKSPSLAF
                     PKWLSHPVSNEQPAPRLEGLPDPSRVSSEVQQMWALTEMIRANHTSTRIGRFDVDGCY
                     DLNLLSYTCFCPSCPE"
ORIGIN      
        1 tgagcatccg cgttcgtcag cagaccctga tgcacacacc agccaagtgg gtaacttgtc
       61 tgcgggacta ctgtttgatg cctgacccac acagtgagga gggagcccag gagtatgtgt
      121 cactgttcaa gcaccagtgc taggattaaa agcacgcatc accacaccct gctcagtgag
      181 tccttctgta tgtgtgtcag atgctgtgtg acatgaacag aatactggag ctgcgtctga
      241 ttctgcggca gccgtcacca ctgtggctgt ctttctccgt ggaggaactg caaatctacc
      301 agcaaggacc aaagagcccc tccttggctt tccccaagtg gctttcccac ccagtgtcca
      361 atgagcagcc tgctccccgc cttgagggtc tcccagaccc cagcagagtc tcctctgagg
      421 tgcagcagat gtgggcattg acagagatga tccgggctaa tcatacttcc acaaggatcg
      481 gccgctttga cgtggacggc tgttatgatc tgaatttact ctcctacact tgcttctgcc
      541 catcctgccc agagtgacga gaaagcaacc ctgggggagt gcgtccaaac aaacgtctca
      601 ctgatattca ctgaggctga ggctctccat ta
//
