LOCUS       NM_001034999            2170 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus nicolin 1, tubulin polyglutamylase complex
            subunit (Nicn1), mRNA.
ACCESSION   NM_001034999
VERSION     NM_001034999.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2170)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101861.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101861.1, FQ229605.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2170
                     /gene="Nicn1"
                     /note="nicolin 1, tubulin polyglutamylase complex subunit"
                     /db_xref="GeneID:619581"
                     /db_xref="RGD:1589574"
     exon            1..207
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..717
                     /gene="Nicn1"
                     /note="nicolin 1"
                     /codon_start=1
                     /product="nicolin-1"
                     /protein_id="NP_001030171.1"
                     /db_xref="GeneID:619581"
                     /db_xref="RGD:1589574"
                     /translation="MSRVVVPCHVKSTVALQVGDMRTSQGRPGVLVVDVTFPNVAPFE
                     LQEITFKNYYTAFLSIRVRQQTLMHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKH
                     QMLCDMNRILELRLILRQPSPLWLSFSVEELQIYQQGPKSPSLAFPKWLSHPVSNEQP
                     APRLEGLPDPSRVSSEVQQMWALTEMIRANHTSTRIGRFDVDGCYDLNLLSYT"
     exon            208..384
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
     exon            385..498
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
     exon            499..570
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
     exon            571..675
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
     exon            676..2126
                     /gene="Nicn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgacgcca ataagggcta gtggttggat ggagactgtt agcggtgatt tcgcttgatt
       61 gtagcctccc aaatcatgtc ccgtgtagtg gtgccctgtc atgtgaaaag cactgtcgcc
      121 ctgcaagtgg gcgacatgag gacctcccaa ggtcggcctg gcgtgctagt cgtcgatgtc
      181 acttttccca acgtcgcgcc tttcgagctg caggagatca cgtttaagaa ttactacaca
      241 gcttttttga gcatccgcgt tcgtcagcag accctgatgc acacaccagc caagtgggta
      301 acttgtctgc gggactactg tttgatgcct gacccacaca gtgaggaggg agcccaggag
      361 tatgtgtcac tgttcaagca ccagatgctg tgtgacatga acagaatact ggagctgcgt
      421 ctgattctgc ggcagccgtc accactgtgg ctgtctttct ccgtggagga actgcaaatc
      481 taccagcaag gaccaaagag cccctccttg gctttcccca agtggctttc ccacccagtg
      541 tccaatgagc agcctgctcc ccgccttgag ggtctcccag accccagcag agtctcctct
      601 gaggtgcagc agatgtgggc attgacagag atgatccggg ctaatcatac ttccacaagg
      661 atcggccgct ttgacgtgga cggctgttat gatctgaatt tactctccta cacgtaagca
      721 gcagcttcta ctggagacat tggccttctg tgcccatcta ggtggggttt ggccaccaga
      781 ggccgaagca cgttccctgt gcatccaagt tctatctggg caaaatctac agattaggaa
      841 ttcttgacat ccatccagtt gttttagcat gaattcctcg tggggggcac tttctgcctt
      901 tgactgtccg acatgtaaat ccagtctctt cctctcagaa ttcaccggtt cgaattagaa
      961 tccttgaatc cttgagctcc tctggattgt cctgtcaata tgcacacccc agtcctctac
     1021 cccttccccc attgccgaga taaacctgtc atatgtagct gaggaagaca ctgctgtttt
     1081 gacactcctg acctgggaag cttggggaag acacaccttc tattcccacc tcacccccag
     1141 cctccctttt gctaatagcc tttgtcattt catcttagcg ttttgtgagt tcaagaacag
     1201 cctagtctac acagtgaatc ccaggccaat tagggctaca tagtgatact tcatattaaa
     1261 aaagaaagaa aaggaaggaa ggaaggaaga aaaagagaaa gaaaggaaag aagaaagaaa
     1321 atagccccct ttgaaattgt ctgctaccag cctagggtgt gaagatgaga ttcctgggag
     1381 cttgaatgct tatgtcccta ggctggctcc tgaaaagtgt cctgtgtcag ttctgggcag
     1441 gtgctgttgg cacagccggg ggcggagaac gagtcctccc tccctccggc ctgtttgtca
     1501 tcagactcag catgaagcac ttccgtgttc ctcttccctt ctctcagttg cttctgccca
     1561 tcctgcccag agtgacgaga aagcaaccct gggggagtgc gtccaaacaa acgtctcact
     1621 gatattcact gaggctgagg ctctccatta ccccagagca accactaaat gaagacgact
     1681 gctgctcttt cccgtgatca aaccgcttcc ctctagttct tcctgggaac tattcttaag
     1741 ctatgctgca aggtgtctca gaactggaaa actgcacatg agtaagtgca gcagttctgg
     1801 gaaagtctgt ccaccttttg atagctaccc tgcattcttg cagtcagccc tcttaaaggt
     1861 cctgtcttca gctacaggac ggtagtttaa gccccactca gttttttttt gttttttgtt
     1921 ttttgggtct tttgtttgtt tgtttgtttt ttcttttctg aaaggataat taacaccgtc
     1981 ctgtgttcag ggagtcaatg gtcttcagaa ggaatgagta aagagggtcc tgaggtggca
     2041 gggactgtgc ataatgcgca gctgtgtccc taagttccca gagcaggagc tagagtgcag
     2101 caagatcaat aaacacttgt ggaataaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2161 aaaaaaaaaa
//
