LOCUS       XM_017589823            7012 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NHS-like 1 (Nhsl1), transcript variant
            X1, mRNA.
ACCESSION   XM_017589823
VERSION     XM_017589823.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589823.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589823.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7012
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7012
                     /gene="Nhsl1"
                     /note="NHS-like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 ESTs, 1 long SRA read,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 32 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:308631"
                     /db_xref="RGD:1308124"
     CDS             35..5038
                     /gene="Nhsl1"
                     /codon_start=1
                     /product="NHS-like protein 1 isoform X1"
                     /protein_id="XP_017445312.1"
                     /db_xref="GeneID:308631"
                     /db_xref="RGD:1308124"
                     /translation="MPFHQRSVEPARLRRPEEAAGALAGDPPLFRSLEQVSSHTLVCL
                     LAQLADLSRCAGDIFGELEGQAAALGHRTAELHRRLDALHAAAARLDHRRVKIPVSNL
                     DEESRWTVHYTAPWHQQENVFLPSTRPPCVEDLHRQAKLNLKSVLRECDKLRRDGCRS
                     SQYYSQGPTFAASSSPGDDYQEEDAETDRKYSLSSSEEERFIGIRRPKTPTSGDFSDL
                     HTQTNWTKSLPLPTPEEKTRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVR
                     RPKKVKRRKTISGIPDIIQKELASATGQEDDGSTHSLYSPDHYSTLGRLDSYRSTGQC
                     LETRDSGCQTEEVKVIPPSVRRIRAHKGLGIAAQMSHLSGSSGNMSVLSDSAGIVFPS
                     RLNNDTGFHSLPRAGARASTYSLEARMGALGSAEDTDDTFPYRGGSSQGPENFAHLGG
                     ASSTGMLSRPKSQQLRLLESPACVVSPHAAYSTSVIPNATLLSSSEVIVIHTAQSAGQ
                     LDSRVPGSSSYSKIKPRDHPTPRCSARDERQSPRHHWNEGHIIHSQALASAAPGATAL
                     LSLRDSEVSLNAPAINRENGSQAILYHCRSNLAFPAHPPDVDGKSECSSSGDRGCGSS
                     ESWEYKASSNGRASPLKPHLATPGCSTPTSNMSSCSLDQASLKEDARSLYSEDHDGYY
                     MTAQGDSRHEAGSAYGISDGFGNPRHSTVNVFDGRAQRSQGDQATQQDRILSRNISLK
                     KAKKPPPPPSRTDSLRRIPKKNNQTNGQVLNESLIASLQHSLQLSLPGQGSGSPSQSP
                     CSDCEEPWLPRSRSQSIVSEGSSLTSTTTPNVYSLCGLTPSQSDTSSVKSEYADPWGY
                     YIDYTTLQGDPGNPTGGCPASSEAATGNGPVRHIQEGSRAPVPQVPGCSVKPKITSPE
                     KSQRVTSPSSGYSSQSNTPTALTPVPVFLKSMSPANGKGKAKPKVPERKSSLISSVSI
                     SSSSTSLSSNTSTEGSGTVKKLDSALASALAPPPPPLPALPSPSLANKSPFLPPPPPL
                     ADCSEGSPLPPSPVFPPPPPEALVPFCSPTDRCLSPSPTAFSPPLPRCSPPLPAPPPF
                     LPPSEPPPAPPLDPKFMKENRPFIKNSSQSESSREALRRPANKEEGCRPSMPLITTEA
                     LQMVQLRPVRKNSGAETVLFSEPSAQEPRTPTAPQYHLKPSAFLKSRNSINEMESESQ
                     AASVTSSLPMPAKSQSQGDHDSAVERGGLQSCSDGAPGPGPSLRTALLPDSSPSRKPP
                     PISKKPKLFLVVPPPQRDFTAEPTENGSEAFSGVPSPTGAEGEAGQSQEEKSSPASQA
                     GSHATAPTSGSTVLERGTAGSLSPGVVEANAPMVQPSTSPGPAQEEAGENRVDGERNV
                     KSCASPRGGEAGLPEPNTAGPSSDTADVSKEGGNDEVLTPTRPRTTEDLFAAIHRSKR
                     KVLGRKDSEDDHTRNHSPSPPVTPTGAAPSLASPKQVGSIQRSLKKSSTSSDNFKALL
                     LKKGSRSDTSARMSAAEMLKSTDPRFQRSRSEPSPEVPDSPSSFSPNKNRRAPEEWAK
                     NEGLMPRSLSFSGPRYSRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEPAEPADNK
                     VRRTLDTTRGCSLDRLAGQETDRGSPLCSEEPASVDGIGRAKDDGPSEQCRGPEQKS"
ORIGIN      
        1 atcgccggtc cgccaacacc ccgcgtgccc agctatgccc ttccaccaac ggagcgtgga
       61 gcccgcacgg ctgcgccggc ccgaggaggc ggcgggggct ctggctgggg acccgccgct
      121 cttccgctcg ctggagcagg tcagctcgca caccctggtc tgcttgctcg cccagctggc
      181 cgacctgtcg cgctgcgctg gggacatttt cggggagctc gagggccagg cggccgcgct
      241 gggtcaccgc accgccgagt tgcaccgtcg cctggacgcc ctgcacgctg ccgccgcgcg
      301 cctggaccac cggcgagtga aaatcccggt ttccaactta gacgaggaga gccgatggac
      361 cgtccactat acggcgccgt ggcaccagca ggagaatgtg ttcctcccct ccacaagacc
      421 cccctgtgtt gaggacctgc accgccaagc gaagctcaac ctcaaatcag tgctgaggga
      481 atgtgacaag ctgaggcgcg atggctgccg aagttctcag tactattctc agggacccac
      541 ctttgcagcc agctccagcc caggcgatga ctatcaagag gaagatgcag aaacagaccg
      601 aaagtattct ctctcttcat ctgaagaaga aagatttatt ggtatcagga gacctaaaac
      661 gccaacctca ggtgacttct ctgaccttca tactcagaca aactggacca agtccctgcc
      721 gctgccaaca ccagaagaga agacacgaca gcaagcccag acagtccagg ctgatgtggt
      781 tcctattaac ataactgggg agaattttga tcgtcaggcc agccttcggc ggtctctaat
      841 ttacactgac actctggtaa gacgaccgaa gaaagtcaaa aggagaaaga ctatttcagg
      901 aatccctgac atcattcaga aggagctagc gtcagccacg ggccaagagg atgatggtag
      961 cacccattct ctatactccc cagaccacta ctctacatta ggaaggcttg atagctatcg
     1021 gtccacgggg caatgcttgg aaaccaggga ctctggctgt cagacagaag aagtgaaagt
     1081 catcccaccg tcagtgagaa ggatcagggc tcacaagggg ctgggcattg ctgcccagat
     1141 gagccacctc tcgggttcct ctggcaacat gtctgtgctg agcgactcgg ctggtatcgt
     1201 gttcccatct cgcctcaata acgatactgg tttccacagc cttccacgcg ctggcgcaag
     1261 ggcaagcacg tattccctgg aggcaaggat gggtgccctg ggctctgctg aagatacgga
     1321 tgatactttt ccctaccgag ggggtagctc ccaggggcct gaaaactttg cacatttagg
     1381 gggtgcctcg agtaccggga tgctttcgag gcccaaatcc cagcagctga ggctcttgga
     1441 gagcccagcg tgtgtggttt caccgcacgc ggcctactct accagcgtca tcccaaacgc
     1501 cacactgctg tcctcttcgg aggttattgt catccacacc gctcagagtg caggacagct
     1561 ggacagtaga gtccccggct catcctcata ctcaaagata aaacccagag accatcccac
     1621 acccaggtgc tctgcgagag atgagcgcca gtccccacga catcactgga acgagggtca
     1681 tatcattcac tcacaggctt tagcctccgc tgcccccggt gccaccgcac tgttatccct
     1741 ccgtgactca gaggtctctc tcaatgcccc agctatcaat agggagaacg ggtcccaagc
     1801 catactttat cactgtagaa gcaacctggc ctttcctgcc caccctccgg atgtggatgg
     1861 caagagcgag tgcagttctt caggggacag gggatgtggc agttctgagt cctgggaata
     1921 caaagcctcc agcaatgggc gggcttcccc actgaagccg caccttgcga ctcccggttg
     1981 ctctaccccc acaagtaaca tgagcagctg cagcttggac caagcatccc tcaaggagga
     2041 tgccaggtcc ctgtattcag aggaccacga tggttactat atgaccgccc agggtgattc
     2101 tagacacgag gctgggagcg cgtacggtat cagtgatggc tttggaaacc ccaggcacag
     2161 cacggtcaat gtttttgacg gaagggctca gagaagccaa ggggatcagg ccactcagca
     2221 ggatagaatc ctctcaagaa acatctctct gaagaaagca aaaaaaccac caccgccacc
     2281 atcccggaca gattctctgc gaaggattcc caagaagaac aaccagacaa atgggcaggt
     2341 gctcaacgag agcctgatcg cctcactcca gcattctctg cagctaagcc tccctggcca
     2401 aggcagcggt tccccttccc agagcccctg cagtgactgt gaggaaccct ggctccccag
     2461 gtccagaagc cagagcattg ttagcgaggg tagtagcttg acctccacca ccactcccaa
     2521 cgtgtattct ctgtgcgggc tcactccatc tcagagcgac acaagcagcg tcaagtcgga
     2581 atacgcagac ccctggggct actacattga ctacacaact ttgcagggag atccagggaa
     2641 ccccacaggg ggctgcccag ccagtagtga ggcagccact ggaaatgggc cagtgcgcca
     2701 catccaggag gggtcgagag ccccagtgcc ccaagtgccg ggctgctccg tgaaaccaaa
     2761 gatcacctca ccggagaagt cacagagagt cacctctcca tccagtgggt attctagcca
     2821 gtcgaataca cccacagcac tcacccccgt gcctgtgttt ttaaaatcga tgtcaccagc
     2881 aaatgggaag gggaaggcca agcccaaggt accagaaaga aaatcgtctc tgatctcttc
     2941 agtgtccatc tcctcatcgt ccacttccct ctcctctaat acctctacgg aaggaagtgg
     3001 gaccgtgaag aaactggatt cagccctggc ctcggccctt gctcctcccc ctcctcctct
     3061 tcccgcgctg ccttctccga gtctggcaaa caagtccccc ttccttccac ctcctcctcc
     3121 tctagcagat tgctccgagg gctctccctt accgccctct cctgtgttcc cccctccacc
     3181 accagaagcc cttgttccct tctgctcccc cactgacagg tgcctttctc cttcccccac
     3241 agcttttagc ccccctcttc caagatgctc acctcccttg ccagcacctc cacctttctt
     3301 gcccccatca gaacccccac ctgctccgcc tctggacccc aaattcatga aagaaaacag
     3361 gccctttatc aaaaactcta gccagtccga atcctctagg gaggccctca ggcggcctgc
     3421 caacaaggag gagggctgcc gaccctcgat gcccctgatc accacagaag ctttgcagat
     3481 ggtgcagttg aggccagtga ggaagaactc aggtgctgag acggtcctgt tttctgaacc
     3541 atcagctcag gaaccacgaa ccccgactgc tccacagtat cacttaaagc catctgcttt
     3601 cctcaaatcc cgaaatagca taaatgaaat ggagagtgaa agccaggctg cctctgtgac
     3661 gagctcgctt ccgatgcctg ccaagagcca gagtcagggt gaccatgaca gtgcagtcga
     3721 gcgtggcggc cttcagagct gcagcgatgg agctccaggc ccgggtccca gcctcaggac
     3781 cgctctgctc ccagactctt cacccagcag gaagccaccc cccatctcca agaagcccaa
     3841 actgttcctg gtggtaccac ctccgcagag agatttcaca gcggagccca cagagaacgg
     3901 gagcgaagct ttctcaggcg tgcccagccc taccggggca gagggggaag ctgggcagag
     3961 ccaagaggag aaatccagcc cagcatccca agctggctct catgctacgg cccccacctc
     4021 cggcagtacg gttctagaaa gaggaactgc agggtccttg tcccctggcg ttgtggaagc
     4081 taatgccccc atggtccaac ctagtacatc accgggcccc gcacaggaag aggcaggaga
     4141 gaaccgcgtg gatggtgaga gaaatgtgaa gagctgcgcg tctccacggg gcggagaagc
     4201 tgggttgccg gaacccaaca cagctggtcc gtcttcagac acggcagacg tttctaaaga
     4261 aggagggaac gatgaggtgc tgacccctac cagacccagg acaacggaag acctgtttgc
     4321 agccattcac agatccaaaa ggaaagtcct tggtcggaag gactccgaag atgatcacac
     4381 tcgaaatcat tctccctccc cgcctgtgac acccacaggt gctgccccta gcctggcctc
     4441 tccaaagcaa gtagggtcca tccagcgaag cctaaaaaag agcagtacca gcagcgacaa
     4501 cttcaaagct ctgctgctca agaaggggag tcgctcggac accagcgctc gcatgtccgc
     4561 ggcggagatg ctcaagtcca cggaccctcg attccagaga tctaggtcgg agccttcgcc
     4621 agaggtcccg gacagcccat ccagcttctc tcccaataag aacaggagag ctccggagga
     4681 gtgggccaag aatgaaggac tgatgcctcg gagtctgtcc ttttccggcc ctcggtacag
     4741 ccgcagcagg acgccaccct ctgcggccag cagcaggtac agcatgagga accgcatcca
     4801 aagcagcccc atgacagtca tctctgaggg agagggagag cctgccgagc ccgcagacaa
     4861 caaagtacgc aggaccctgg acactacgag gggatgctct ctggacagac tggcgggaca
     4921 ggagacggac cggggcagcc cgctgtgtag cgaggagcct gcctctgtgg atgggatagg
     4981 aagggctaag gacgacggtc cctcggagca gtgtaggggt cctgaacaga agagttagta
     5041 tccaaacttg cctctcatga gtgaggcagg aaggtgagcc gtgcatcaca ctaggaagtc
     5101 tctgtggcct tttcctggct tgtggggacc ccacgcagca ttagtgttgg ggaggtctca
     5161 gccttgcaag tctcctagga ctcactcgcc atgtggctta aaagcaagta gaagcttcaa
     5221 cttctgaaag tgcttcctgg ggaagatggt ttcgtttggt tttgtttttc ccaaaatgct
     5281 gggtgtgtgc ctatgtgtga atgttgaata cttcacgcta gcaaatacac acactaacgt
     5341 tgtgtatagg aagaggagaa gagggcagag ttcaggtagc taagtaacgg agtcctctgg
     5401 accagggtgg taactgcttt caactgcatt atgggtatgg ggaatgtgtg agttcaacta
     5461 agaagagacc ggaggccgtt acttctcaca ggcagtgggc tggctggttc taagtataga
     5521 acatgactgt gtgtacattt actatagctc aagacacaag cgggaaccgt gaaggggctg
     5581 ggaagtggct aagcaactca ttggttcagg tacttttagg gggcggggga agccttgctg
     5641 ccaccactgc agtgcatcat cctcctcctc tcccctcccc ctcctctccc tcccctgtcc
     5701 tcccctcccc ctcctcccct ccccctcccc ctctcgtaaa aattacacaa atgaattgac
     5761 aaggctgtgt gttgtgcccg ttgcatacat ttctagccct gatgtcagaa gcatgggtgg
     5821 gatttttttg tttgtttttt aaaaatgaat tcccttctgg agttgttcta gaggaatgag
     5881 acaagagagg tctcctgaga gaagggtagg ggactgggtg attctgccgg atttgtttcc
     5941 cggttaatta aataaaatat tttcaggctt attaaatcag aaaacgtgca ctgtagaatt
     6001 ttgggtggag ctttttcctt taaaaagagt tgtttttgtt ttaaaaatca gagttcagac
     6061 ttacatgtga cagtttgtca cttgaaatgt gacacttgac attcgctcct ttggtcataa
     6121 ccaaagaaaa ataatacggc aatttttcac ccctgaactg ctcacagcat cgtgttttaa
     6181 tttagaaggt ttaccaaaat ctactctata ttatctcact ttgaagaaaa ccgctgactc
     6241 ttgttagtgg gagaaattga tgaaaatctg tagggcatgg ctatgactta gccctgggaa
     6301 atgagttttt agattaaaaa ggttttgttt ttgttttttt ttttttttgc accgcctggt
     6361 ttgtgtgatt ttgtatttgt tgctgactcc cttccaggtt cctcccgtca tgctttagaa
     6421 tggggatcaa ggtgtgcaaa tgttatttat tttactataa tgtccttggg atccttaccc
     6481 actaccgggt gtatccagat agaatgcact ccaccttatt ctttctcaca gtggtgacac
     6541 tgggcttctg aagctgctat cacttgctgt gaaccatgtg tgatgacatc tggaagtcaa
     6601 accacacaag ctgaagcctt gtaaggcttc ttccacagaa ccactgatag ccattttaga
     6661 tacagctctg gggcaagaac ttagcaaaca gagcacttct cacagccaca aatgacaccc
     6721 tgacatgtga ccacggaggt tttttttttt ttttaaatcc cttgtgtcat ttttcaactg
     6781 cgcagggcac acagatcatt tcttctaaat cttagggagg tcatgttgac atttgaatac
     6841 ctaaaaagga ttagaatgta tggcgtggat atcagaaata atatatcgat atttgtttga
     6901 aggtaagaca agcagcatta gaactaatta taaaatgatt ttaaatcccc catttaaaag
     6961 gtatttatta ggttttaagt ttgttttgaa taaaacaatt gtaaagccag ca
//
