LOCUS       XM_008761017            3984 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NHL repeat containing 3 (Nhlrc3),
            transcript variant X1, mRNA.
ACCESSION   XM_008761017
VERSION     XM_008761017.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761017.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761017.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3984
                     /gene="Nhlrc3"
                     /note="NHL repeat containing 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 23
                     ESTs, 1 long SRA read, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 108 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:310416"
                     /db_xref="RGD:1565414"
     CDS             51..1244
                     /gene="Nhlrc3"
                     /codon_start=1
                     /product="NHL repeat-containing protein 3 isoform X1"
                     /protein_id="XP_008759239.2"
                     /db_xref="GeneID:310416"
                     /db_xref="RGD:1565414"
                     /translation="MYFSERGSHCFSVTVPSLFSFAVLCFDSWMLPLPQTRLQAPLTF
                     TSQALRMARTWVCLAGAVFFLSCLVLHSRFCGSLVSRTFSFHISWRMEDPLFRLDLGW
                     PKNSEYFTGATFCVAVDSLNGLVYVAQRGDDIPKVLVFSEDGYFLRAWNYTVDTPHGM
                     FVSGTPYEQSVWITDVGSGPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAE
                     LYVDDTGEIYIVDGDGGLNNRLVKLSQDFMILWLRGENGTGPAKFNIPHSVTLDSVGR
                     VWVADRGNKRLQVFDKDTGEWLGAWDNCFTEEGPSAVRFTPDGRYLIVAQLNLSRLSL
                     LAAPPSGSIGDCTVVSTIQLADEVLPHLLEVDRKTGAVYVAEIGAKQIQKYVPWHSRT
                     PALGA"
ORIGIN      
        1 cataggcatc cgcggcagac gcctgaacgc ttgtgaaacg gatgtaacta atgtactttt
       61 cggagcgtgg tagtcattgt tttagtgtca cagtcccctc actcttcagt tttgcggtgc
      121 tctgttttga ttcttggatg cttcctctgc cacagacccg gcttcaggcc ccgctgacct
      181 tcacctccca ggccctcagg atggcgagga cctgggtctg cttggcaggc gccgtcttct
      241 tcctttcctg tctggttttg cattcgcgct tctgcggctc tctggtttca aggacatttt
      301 cttttcacat ttcatggaga atggaagacc ctctcttccg gctggatttg ggctggccca
      361 agaattcaga atacttcact ggtgcaacat tctgtgttgc agttgactcc ctcaacgggt
      421 tagtttacgt agctcaaaga ggggatgaca tccccaaggt attagtgttc tcagaggatg
      481 gatatttcct acgagcctgg aattatacag ttgacacacc ccatggtatg tttgtctccg
      541 gcacaccata tgagcagtcc gtctggatca cggacgtagg aagtggaccc tatggccata
      601 ctgttaaaaa gtataattcc ctcggtgatc ttgttcaagt cttgggaacc ccaggcaaga
      661 agggcactgg cttgaacccg ctgcagtttg acaaccctgc agagttatat gtagatgaca
      721 caggagagat ttacattgtg gatggagatg ggggactgaa taacagattg gtcaaactat
      781 cccaagattt catgatcctc tggctgcggg gagagaatgg aacaggacct gccaagttca
      841 acatacctca cagcgttaca cttgactcag tcggtcgggt gtgggttgct gaccgaggaa
      901 ataaaagact ccaagtattt gataaagaca ctggagagtg gttaggagca tgggacaact
      961 gtttcacgga ggaggggcct tctgctgtga ggttcacccc agatgggagg tacttgattg
     1021 tggcccagct gaacctcagt agactgtcat tgttggctgc tccaccctcc ggaagcatcg
     1081 gagactgcac tgtggtcagc accatccagc tggcagatga ggttctgcca cacctcttag
     1141 aagttgacag aaagactggc gctgtctatg tagcagaaat tggggcaaaa caaatacaaa
     1201 aatacgttcc gtggcacagc cgcacccctg ccttgggggc ttagtgcttc tggctaggca
     1261 gagcttcaag tagcagttca gcacctcaga gtcattgcgt ttaaaaaggc acccatgcac
     1321 aggatcattt ttatctcttc taccagaaaa gtgtgtgttt cgtcatgacg agtcatgttt
     1381 tccgtgattt ggggacttag ttttacaaat aggcgtgtaa gaattgtttt tctttttggt
     1441 ggccctggga gttgaactca ctgcttccta catgctaggc agctgcctta gctacatctt
     1501 tacggaagca gcttttaaag aaagaaatgc aattctaaaa tggggtcatg agggcaagct
     1561 gtggttgcaa ccaagttact tgcctatgcc gattaactct gggatcctgg gtaactttga
     1621 tttcttatga agagtggaaa ccactagttt tatgtacttt agactgtggg agagatttga
     1681 tgcgtgcaga gggccacacc agtcctgagg attctgaagt gagggagcag tgtggtttgc
     1741 cttgtgcttc aatagacaga taagtgggta tggtgacagc aggatcgaga ggaccatgac
     1801 ggacaggagg aggtgtgtgt gtggggtggg tgggtctggg ggaattcatg gaaactgcag
     1861 tcaatggcag cctggactca tactgggtca agagatacgt gagaaagagg agaggcgaca
     1921 ataccatcta ggtaaagaag ggctgaggca gacttcccat ggatttggag ggaaaaaaca
     1981 acaaagggtt tgatcttctg gctacaaaat gcttaatgtc acccttgaca agcaagacta
     2041 catccagcat ctcagcactg agctgaaagg aagacttgca ggtgggtgtt ttagagctcg
     2101 tgctggcaat aagttccctc ctcaggatcg cccatgccat tgtgcaatat taactcatgt
     2161 acttaccagc acttacctac ctcaaagata ttttaattag aatcattttc atggaagcgt
     2221 gccaaatgct ttgaggtatt acatgaaagt tttctgcctt tccagcctac ttttgcacta
     2281 tctaaatatt gtccttcatg tgccaaggct tctgtgttct ttcagtttgt tctggttgat
     2341 tctaggcttt gatggagccc tttgctatca gggtgttttc atcacccatc ccgtttgctc
     2401 ctatcagtgt ccgtcctggt cccagagttt tgctgtgact tgtacagcac tgggccagcc
     2461 taagctgacg ttaccccact tactccagct gaggagcttg gcccttcctg tcctggtagt
     2521 ggtggcatgt gcagtgtggg cggaagggga gcctccagca aaagagcgct ggattccaat
     2581 gtcaaatgtg tccctaccac tcaccagatt gttgcagaag cgtcacctta cttttctcgt
     2641 tagtgacaag ggaccattgt ccttccttcg ttcactaatg ctgattggac tggatgtgca
     2701 gtaggcacag gttctagatg gagcctggag tgcattacag aatgttccaa gaccagacct
     2761 tctaactgcc attttcattt taacacatgc caggtttgcc tggctgtgtc caaggcttct
     2821 acaacatgag aagtctgtta atataaccag ttgacttggg tagaaaggga atatgaagct
     2881 tgttttgttg gtaagccaga caagacatgt aggtgctcct gaaggagagc agactagctg
     2941 aactgccttt gttatttcaa ctgtatttta tttaccagtt tattctagat catttttatt
     3001 gcagtgtttc gatcagatct gtcattcgtt ctctcccctt cagctcctcc ccaccctcca
     3061 taatcttttc ctcccagttt cacgtgcacg tgttcattcc atgaactcgg tgctgcctgg
     3121 atgtgcaaat gtcccccaca gccatccatc tccaatagct tctcggctcg tggtacttcc
     3181 cgagcctccc tgatctctgc cgggattttg actgttgctg tgggttcctt tccagcagat
     3241 ggtgttctgc tgcagacaca ccacccctgt cctcttctgc agtagtccct gaggctttca
     3301 cggatgtccc atttagagcc catcagttca cagtctctta cgctctgtgg ctgaatcact
     3361 tgtgaatctc tgtattaata tccatctatt tcaaatgaaa cttgtgatga gaattgagcg
     3421 gtgcagtaac ctgggggtat gaagataaga acttcccagt ggggcacttt attactgcat
     3481 ccctttacca gtataatagc attagatagt cccctggggc aatggtctcc ccaaccacag
     3541 gtgtttagct agttagcagt accaagcagg cttccatctt ttagagcagg ccttaaatcc
     3601 aatcagaaag tggttggtta ctctcataac tgtgcaattc ttgtgccagt ggacacacct
     3661 tgataggcct gtcctttctg tagctagcag gccgcacaca gttggttatc ttcaatgctg
     3721 aacaatttct ccttcagtga tataaataga accttcaaga agtgtgagag ctagctagta
     3781 gggatgaagc ttcctggcca gtgccagcat gatttctgca cagattctta taaaacttgc
     3841 tactgatgct gttcttgttt atcttttgtg atcattgtgc ttacagtcaa agcatttcac
     3901 tctggatcag tgagttaaag aaataagact tgtattttct attgggacat taaagttttg
     3961 caaaaataaa agtatataac ctgg
//
