LOCUS       XM_006245240            1444 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nonhomologous end-joining factor 1
            (Nhej1), transcript variant X4, mRNA.
ACCESSION   XM_006245240
VERSION     XM_006245240.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006245240.3.
            
            On Jan 21, 2021 this sequence version replaced XM_006245240.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1444
                     /gene="Nhej1"
                     /note="nonhomologous end-joining factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 1 long SRA read, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 109 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363251"
                     /db_xref="RGD:1359338"
     CDS             137..1051
                     /gene="Nhej1"
                     /codon_start=1
                     /product="non-homologous end-joining factor 1 isoform X2"
                     /protein_id="XP_006245302.1"
                     /db_xref="GeneID:363251"
                     /db_xref="RGD:1359338"
                     /translation="MEELEQGLLMQPWAWLQLAENSLLAKASITKHGYALLISDLQQV
                     WHEQVDTLEVSQRAKELNKRLTAPPAAFLHHLDEVLRPLFKDSAHQDAAHPSKATFSC
                     DRGEEVLILRVRSELSGLPFNWHFHCLPASSLLVSQHLICPLMGVSLALHSHVRELAA
                     LLRMKDLEIQAYQESGAVLSRGRLKTEPFEENSFLEQFMVEKLPEACAVGDGRPFAMN
                     LQSLYVAVTKQQVQARQKHKGSGEPQTSSSTSPQGTDSQLQNQPEQQISPTPTLSEPE
                     CEPMAASGPVHRAQLVKAKRKKPRGLFS"
ORIGIN      
        1 caccccaaga tcccgccttc ccgagtgtgt gtgtgtgtgt gtgtgttggg ggggtggcct
       61 ctaccctagg cctttcagtt tgcgcaccag ggcaggcctg ccgtgaggag ggtgggagtt
      121 cccgcagccg ttgacgatgg aggaactaga gcaaggcctg ttgatgcagc catgggcatg
      181 gttacaactt gctgagaact cactcttggc caaggcttct atcaccaagc atggttatgc
      241 cttgctgatt tcggatcttc aacaggtgtg gcatgaacag gtggacactt tggaggtcag
      301 ccagcgagcc aaggagctga acaagcgcct caccgctccc cctgcagctt ttctccatca
      361 cttggatgaa gtgcttcgcc cactgtttaa agattctgcc caccaggatg ctgctcaccc
      421 tagcaaagcc actttctcct gtgatcgtgg agaggaggta ttgatcctga gggtgcggag
      481 tgagctctct ggtctcccct tcaattggca tttccactgt cttccagcta gttctttact
      541 ggtctctcag catttgattt gtcctctgat gggtgtgagc ttggcattgc acagtcatgt
      601 gagggagcta gcagcattgc ttcggatgaa ggaccttgag atccaggcct accaggagag
      661 tggggctgtg ctgagccgag gtcgattgaa gacagagcca tttgaagaaa attctttctt
      721 ggaacagttt atggtagaga aattgccaga ggcatgtgct gttggtgatg gaaggccatt
      781 tgccatgaat ctgcagagcc tgtatgtggc agtcacaaag cagcaggtcc aagccaggca
      841 gaagcataaa ggctctggag agcctcagac atcaagcagc acctcccctc aaggaactga
      901 tagccagctt cagaaccagc cagaacagca gatctctccc actccaaccc tctcagagcc
      961 tgaatgtgag cctatggctg cttcaggccc tgtgcataga gctcagctgg taaaggccaa
     1021 gaggaagaag cccaggggac tcttcagtta gctcaccatg tctcagccac cgagaagaga
     1081 gcaaaaccgc ttcctagcat cacccggaga ggagcttgcg tggcaaagca tccgtcagag
     1141 gcctgagttt gtactgacag gccacctgag tgggaactcc atcagtggag cctgagtccg
     1201 acgaactggc agttcagata tgagtgacgc cagctcctcg tttggttgac gccagctcct
     1261 cgtttgatag cattctttct ctagaactag catctgtggc aaacttagat acatgaagcg
     1321 agtttgcaaa gaggtgcatg cccaaaacac caagctgtct ttcacagggg tctctcacca
     1381 gtcctacatg acccttagaa aactgctccc tcaacacaga ataaaagatg ctcacattcc
     1441 tcaa
//
