LOCUS       NM_001170438            3785 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus nuclear transcription factor, X-box binding-like
            1 (Nfxl1), mRNA.
ACCESSION   NM_001170438 XM_001057325 XM_001077093 XM_006250896
VERSION     NM_001170438.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000252.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001170438.4.
            
            On Feb 10, 2021 this sequence version replaced NM_001170438.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The extent of this transcript is supported
            by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132301,
                              SAMD00132302 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               JACYVU010000252.1  15614110-15614222
            114-368             JACYVU010000252.1  15614516-15614770
            369-545             JACYVU010000252.1  15617397-15617573
            546-655             JACYVU010000252.1  15621718-15621827
            656-786             JACYVU010000252.1  15623828-15623958
            787-965             JACYVU010000252.1  15627133-15627311
            966-1127            JACYVU010000252.1  15627525-15627686
            1128-1228           JACYVU010000252.1  15627783-15627883
            1229-1343           JACYVU010000252.1  15628433-15628547
            1344-1468           JACYVU010000252.1  15629695-15629819
            1469-1591           JACYVU010000252.1  15630463-15630585
            1592-1682           JACYVU010000252.1  15634176-15634266
            1683-1803           JACYVU010000252.1  15637998-15638118
            1804-1963           JACYVU010000252.1  15638331-15638490
            1964-2055           JACYVU010000252.1  15639350-15639441
            2056-2077           JACYVU010000252.1  15642812-15642833
            2078-2218           JACYVU010000252.1  15643228-15643368
            2219-2385           JACYVU010000252.1  15645096-15645262
            2386-2455           JACYVU010000252.1  15646564-15646633
            2456-2560           JACYVU010000252.1  15650516-15650620
            2561-2647           JACYVU010000252.1  15652597-15652683
            2648-2701           JACYVU010000252.1  15653468-15653521
            2702-3785           JACYVU010000252.1  15654439-15655522
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..3785
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /note="nuclear transcription factor, X-box binding-like 1"
                     /db_xref="GeneID:289595"
                     /db_xref="RGD:1359201"
     exon            1..113
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            114..368
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..2875
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /codon_start=1
                     /product="NF-X1-type zinc finger protein NFXL1"
                     /protein_id="NP_001163909.1"
                     /db_xref="GeneID:289595"
                     /db_xref="RGD:1359201"
                     /translation="MDASWRQVAAGRGRARGRGTAVPLSGNGVPLSGAGGGRAKGSGG
                     AVPSAPGPRRAATPGPAGHKQRSAGGEAPQPLWVGGEDGSELISQRKFEEIKKANQAA
                     ARKLVEEHCSSSSEEEEGDEDFEGKQGKIVANTFITYTTHTDGDVHELEKTKQYLNEA
                     FQAGAMTCLICIASVKRNQAVWSCSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKK
                     DYPWPCPKCRFEYKRSETPSRYYCYCGKVEDPPLDPWLVPHSCGQVCEREFKPSCGHK
                     CLLLCHPGPCPPCPKMVTTTCYCKKAKPIPRRCSAKQWSCQLPCGRKLLCGQHSCENP
                     CHAGNCQPCPRVSRQKCVCGKKVAERSCASPVWHCDQVCRKTLPCGNHTCEQVCHVGA
                     CGECPRSGKRSCPCQKSKFSLPCTEDVPTCGDSCDKILECGIHRCSQRCHRGPCETCR
                     QEVEKQCRCGKHTKRMPCHKTYLCETKCVKMRDCQKHQCRRKCCPGNCPPCDQNCGRT
                     LGCRNHKCPSVCHRGSCYPCPETVDVKCNCGNAKVTVPCGRERTTRPPKCKELCSRPP
                     TCHHSSQEKHRCHFGPCPPCHQPCQKVLEKCGHLCPISCHDQALVKQTGRHQLSGPWE
                     QPAEPAFIQTALPCPPCQVPIPVECLGKHEVSPLPCHAVGPYSCKRLCGRMLNCQNHT
                     CTKECHKVTEVDGCPGRHKAGPECLQCEEGCSKSRPAGCPHPCVLPCHPGKCPPCVQM
                     LRIKCHCKITNLYVECRKITTADVSEKNLLSCCKNQCPKELPCGHRCKEMCHPGECPY
                     NCNQKVKLRCPCKRIKRELPCNKIRGNQVSVECDAACKEMKRKASEIKEAEANAALEE
                     EKRRQQAELEAFENRLKGRRKKNRKRDEVAVQLSPWQKYKSYLFPVCGVVVAVLVWYI
                     CHHAD"
     exon            369..545
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            546..655
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            656..786
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            787..965
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1127
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1228
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1343
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1468
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..1591
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1682
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1803
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1963
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2055
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2056..2077
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2078..2218
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2219..2385
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2386..2455
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2456..2560
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2561..2647
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2648..2701
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
     exon            2702..3785
                     /gene="Nfxl1"
                     /gene_synonym="RGD1359201"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgggcaga ggcttctggg agttgtagtc gctggcggtg ggcgccgtcg gtaaggagac
       61 gtagctttcg gtgcggtcca cttcagcagt tggttcccgg ccgcggcgtc acgggatgga
      121 cgcttcctgg cgccaggtgg ccgctggccg aggccgagcc cgaggaaggg gtaccgcagt
      181 gcccctctca ggaaatggag tccctcttag cggcgcaggg ggagggcgag ccaaagggtc
      241 tgggggcgcg gtgccctcgg cccccggccc gaggagagca gcaactccgg gccctgcggg
      301 tcacaagcag cgctctgctg gaggcgaagc cccgcagccc ctgtgggtcg gcggtgagga
      361 tggctcagag ctaatatctc agaggaaatt tgaggagatc aagaaggcca atcaagctgc
      421 agccagaaag ctcgtggagg aacactgcag ctcttcctct gaagaagaag aaggggatga
      481 agactttgaa ggaaaacagg ggaaaattgt tgctaataca ttcataacat acaccactca
      541 cacagatgga gatgtacatg aattggagaa aacaaaacag tatctgaatg aggctttcca
      601 agcaggggct atgacgtgcc tgatttgtat tgcttcagtg aagagaaacc aggcagtttg
      661 gagctgttca ggatgtttct gtatattcca catgccctgt attcagaagt gggctaagga
      721 cagccagttt cttgtatctt ctgtgacaga cgatgatttt ggaaagaaag attatccctg
      781 gccatgtcca aaatgtagat ttgaatacaa aaggtcggaa acacctagtc gatattattg
      841 ctactgtgga aaagtagaag acccaccttt agatccctgg cttgttcctc attcgtgtgg
      901 ccaagtgtgt gagagagaat ttaaaccttc ctgtggtcat aaatgtctac tactctgcca
      961 tccaggtccc tgccctcctt gtccaaagat ggtcacaact acttgctact gtaagaaagc
     1021 aaaacctatc cctcgtaggt gcagtgccaa gcagtggtcc tgtcagctgc catgtgggcg
     1081 aaagctgctt tgtgggcagc attcgtgtga aaatccttgc catgcaggaa actgtcagcc
     1141 ttgtccaaga gttagtagac aaaaatgtgt atgtggcaaa aaagtagcag aaagaagttg
     1201 tgcgagtcca gtgtggcact gtgaccaagt atgtagaaag acactgccgt gtggtaatca
     1261 tacatgtgag caagtttgtc atgttggtgc ttgtggagaa tgtcctcgct ctgggaagag
     1321 gtcttgtccc tgtcagaaat caaagttttc tttgccttgt acagaagatg taccaacttg
     1381 tggagacagc tgtgacaaaa tactcgaatg tggaatccac aggtgttcac agcgttgcca
     1441 tcgaggtcct tgtgaaacgt gcagacaaga agtggaaaag cagtgtcgtt gtggaaaaca
     1501 tacaaagcga atgccttgtc acaagactta cctttgtgaa acgaagtgtg taaaaatgcg
     1561 ggactgtcaa aagcatcagt gtaggagaaa gtgttgccct ggaaactgtc caccttgtga
     1621 tcaaaattgt ggacggactt taggatgtag aaaccataag tgtccgtctg tctgccacag
     1681 aggcagctgc tatccatgcc cagaaacggt agatgtgaag tgcaactgtg gtaacgcaaa
     1741 ggtgacagta ccctgtggcc gagagcggac tacaaggcca cctaagtgca aagagctgtg
     1801 cagtcgacca ccaacatgtc atcattcaag tcaagaaaaa caccgctgtc actttggccc
     1861 atgcccacca tgtcatcagc cttgccaaaa agttctggag aaatgtgggc acttgtgtcc
     1921 catttcatgt catgatcaag cattagtaaa gcagaccggc aggcatcagc tgtcaggccc
     1981 ttgggagcag ccagccgagc cagcgtttat tcagactgcg ttgccttgtc ctccgtgtca
     2041 agttcccatt cctgtggaat gtctggggaa gcatgaggta agcccactac catgccatgc
     2101 tgtaggaccc tattcatgca agagactttg tggaagaatg ttgaactgtc agaatcatac
     2161 gtgtacgaaa gaatgccaca aagtgactga agttgatggc tgtcctggca gacataaggc
     2221 tggcccagaa tgccttcagt gtgaagaagg gtgttctaag tcacggcctg caggttgtcc
     2281 tcacccttgt gttttgccat gtcaccctgg aaaatgccct ccttgtgtcc agatgcttag
     2341 aataaaatgt cactgcaaga tcacaaacct gtatgtggaa tgtagaaaaa taaccacagc
     2401 tgatgtgagt gagaagaacc tcctcagttg ttgcaaaaac cagtgcccca aagagcttcc
     2461 ttgtggccat agatgcaaag agatgtgtca tcctggtgaa tgcccctata attgcaacca
     2521 gaaggtaaaa cttagatgcc cttgtaaaag aataaaacgg gaattgcctt gcaataaaat
     2581 ccgtgggaat caggtttcag tggaatgcga tgcggcgtgc aaggagatga agcggaaagc
     2641 atctgagatt aaagaagcgg aagccaacgc tgctctggaa gaagaaaagc gaaggcagca
     2701 ggctgagctg gaggcttttg agaacagact gaagggccgg cggaagaaga acaggaaacg
     2761 cgatgaagtg gccgtgcagc tctcgccttg gcagaagtac aagtcctacc tctttccggt
     2821 gtgtggagtt gtggtggcgg tgcttgtgtg gtacatctgc catcatgcgg attaatgatc
     2881 ctttagatct cacttacctc agactggagt tatataaacg ttgactctag gacgttagaa
     2941 cgtgcgctgt agcatatgat acacattcac attcctctct gtgtccttgt ctggctgtag
     3001 gtaggacagg atgttttagt gttctctgaa ccagcagttc ccgggcctgt gagatactgt
     3061 acagtcatca tggctgcagg tagaaacagg tcaggaagct tcgtcaggag cactgtgccc
     3121 ctgtgtatta agttagtctt tgtcctcaga tgtgtccacg tccaacactt catcctgtga
     3181 attcagatag aactgagcca tatgtgcagc cacaaggata tttctctgtg atatttcact
     3241 tactgggtac ttttcttgat catgtaactt tctacttttt taaagaaatg attctgtaac
     3301 agaatcttaa attctaacag gaagttttat agttagattt cagattatca gagaggaatt
     3361 tttattggta attgaagcaa attttacact gcgtattcct cggatatata aacaagtgcc
     3421 agacgaggtt ccttttagga cgttgttggg ttgggttttt tttttttttt tttttttttt
     3481 ttggtgtaag aagctttaat tgatgttggc atgttttgta aaacttgtgt gtatcttttt
     3541 atgatcataa taaaggaaaa ctaatattta tgagcaatat gtgcagagca cagggctggt
     3601 gggtgtaatg tacttgattc catttttttt tttactgtaa tttttgatat agctgagaat
     3661 aatccatttt gtgaaatcaa actgatagag aaataataag ccaaattgca tagatttgta
     3721 agtcatttaa agtagttttg ctatttaatt ttatgattgt tttcattaaa agttttcata
     3781 ccaaa
//
