LOCUS       XM_039093851            3975 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NFKB inhibitor delta (Nfkbid),
            transcript variant X1, mRNA.
ACCESSION   XM_039093851
VERSION     XM_039093851.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3975
                     /gene="Nfkbid"
                     /note="NFKB inhibitor delta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 89 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:308496"
                     /db_xref="RGD:1308055"
     CDS             2126..3217
                     /gene="Nfkbid"
                     /codon_start=1
                     /product="NF-kappa-B inhibitor delta isoform X1"
                     /protein_id="XP_038949779.1"
                     /db_xref="GeneID:308496"
                     /db_xref="RGD:1308055"
                     /translation="MEDSLDTRPYPEPSLSQVGSWRVSGLPSGSPQLPPSTGPSLEAA
                     RAHILALGPQQLLAQDEEGDTLLHLFAARGLRWAAYAAAEVLQMYRQLDIREHKGKTP
                     LLVAAAANQPLIVEDLLNLGAEPNATDHQGRSVLHVAATYGLPGVLSAVFKSGIQVDL
                     EARDFEGELVLPRADVVGWLDRVDTQVQVPYCVHSTGLTPLHTAILALNAAMLPPTMC
                     PRMLSSQARDRLTCVQMLLQMGASHTSQEIKSNKTILHLAVQAANPTLVQLLLGLPRG
                     DLRAFVNMKAHGNTALHMAAALPPGPPQEAIVRHLLAAGADPTLRNLENEQPVHLLRP
                     GPGPEGVSTDLTSELTRGPPNCTQASFRK"
ORIGIN      
        1 tggtcacggt gagttgaaaa taacctaaca tctctctgga gaaaggtgaa tgactacagg
       61 tagggttcag agtctaggga caagtctagt cctgacagta aatctgggag ggctgatagc
      121 tgagagacat gtgtaaagcc atagactggg tgagatcttt aaagaggcac acacacacac
      181 acacacacac acacacacac acacacacac acagagccag gggagagagg gaaaagcaac
      241 catataggga agccgagggc agaagcaagg gaggaggaga cccaactccc agcagtgtta
      301 gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga ttgatttggt
      361 catcacagtt cagtgccaag gaaggtcacc aagtgagaac tgagactatc catcccctag
      421 cgaactggga attcctgttt ggctcatact tctccatccc ctgtgttcag gaaagtgtct
      481 cctttatgct aacagggttt cttaaatggt gaataagtaa gtcagacatg attgtccagc
      541 acttgggaga caagtgagaa aaatggctgt gagttcaagg ccagcctggc tgatttagca
      601 ggttcgtggc cagcccagct gcttacatgt aggaagcccc tgtctcaaaa acaaagtgtt
      661 ggaaggaaga ttgttcggca gataaaggtt cttgacgtgt gttagaaccc cataaccctc
      721 acaaaaaggc tgaaatctac agagggcttt ggagcacatg ttcttccacc tccgggggga
      781 gttcgcacac acatgttttt aatgcaaata ttggaaccag acaatgtggc atatgccttt
      841 aatcccatca ctggggagac atttctgtag atttctgtgg attccaagcc cagcctggtc
      901 gacatagtga gttccaggac agctagggct acatagtgag accctgtttt gaaggggggc
      961 gggggaaacc tgaaaaacaa aacaataaaa gccaatattg gtagttgata tggtggccaa
     1021 ttctctgtaa cccaacattt gggaaatgga atcaagagaa tcaggagttc aaggttatcc
     1081 ttagttacct agagttctag gctgacctga gctacacgaa ccccctcttc gcccttcaca
     1141 cacacacaca cacacacaca cacacacaca cacacacaca cacacacact caaatcaaaa
     1201 ctgaaaccaa agcgggagaa aaaagcttta taaatgaaag ttaactctaa agaagcaaac
     1261 agccacgtgg aaaagagagg tttaaggcac ctctacgacc cttgcctaag gacttctcca
     1321 agaagccatg gggtctaggt tcatggtcat cctctcccgg aagaccccac agtacttctc
     1381 tgcttgtgca cagccaagtc aaggcctcca gtatctcctt ggtcagagac tcaaaattcc
     1441 agatccccat gtctccctct agaaaaaggg aggatcctta agcacctact tccagggaga
     1501 ctaggcgatg acactcttca aggtcagccc ctcccattca gagactaagc tctcccgctt
     1561 cacccgggac tcctagaact gtgggcgggg ctccgccttg aaccaggcgt ggccaaaaga
     1621 agaatttaaa aactcgcggg ggacctggct ttggatcggg ggacccggcg gcggctccgc
     1681 ggggcaagca gcgaggctgg cgcagcgccg aggccgcggc cctgggggcc cacaatctgc
     1741 atccaagaat cctcgagtga gtcggcctga gcgcagtcac tgcccaacac agaccgtaaa
     1801 gaagcttctg gaagaacaga ggcgccgaca gcagcagcca gaggctgctg gggtaccggg
     1861 acacttctcc cctcctctgg tccagccact gaccccatct gtgagcgagt cagaggcagg
     1921 ccatactcac ttccctgcct tccaagagac tgtggattct ggacctggca acctggctcc
     1981 cccttcaggc ttcacagact gggactccag catccatgct ccgtatgcag aaggctcttt
     2041 cccatactct gcttctgaag gcttcctgac tcctgatctc tacccagtgt cagacccagg
     2101 ccggtcaggc ccatttcccc tggcaatgga ggactctctg gatacccggc cgtatccaga
     2161 accttccctg tcacaagtag gatcctggag agtctctggt cttccctcgg gatccccaca
     2221 gttgcctccg tccactggac cctccctgga ggcagcccga gctcacatac tggctctggg
     2281 cccccaacaa ctgctggccc aggatgagga aggagacacg ctcctgcacc tgtttgctgc
     2341 tcggggactg cgctgggcag cctatgcagc cgcagaggtg ttacagatgt accgacagct
     2401 ggatatccgt gaacacaaag gcaagacgcc tctcctagtg gcagctgctg ccaaccagcc
     2461 cctgattgtg gaagacttgc tgaacctggg agcagagcct aacgccactg accaccaggg
     2521 ccgttctgtc ctgcatgtgg ctgccactta cggactcccg ggagtccttt cggctgtgtt
     2581 taagtcaggc attcaagtgg atctggaagc cagagacttc gaaggtgagc tggtcctgcc
     2641 cagggctgat gtggttggct ggctggacag ggtggacact caggtgcaag tcccttactg
     2701 tgtacattcc acaggcctta cccccctcca cacggccatc ctggccctca acgctgctat
     2761 gctcccacct actatgtgtc cgaggatgct gagttcccaa gcccgagaca gactgacatg
     2821 tgtgcagatg ttactgcaaa tgggtgccag tcataccagc caggagatca agagcaacaa
     2881 gaccattctg cacttggctg tacaggctgc caaccccacg ctggttcagt tgctcctggg
     2941 cctgccgagg ggagaccttc gggccttcgt gaatatgaag gcccatggga acacagccct
     3001 ccacatggca gccgccctgc cccctgggcc gccccaagag gccattgtgc ggcacctgct
     3061 ggcagctggc gcggacccaa cactgcgcaa cctggagaat gaacagccag ttcacttgct
     3121 gcggcctgga ccgggccctg agggggtgag cactgacctg acttctgagc taactagggg
     3181 tcccccaaac tgcacccaag cctcgtttag aaaatgacat ttagtctcag aaggcgactc
     3241 ttcaaagagt gtcctgtgct gagtactacc ctcctatcac cccagcactc gcaagacaga
     3301 gtttgagcta gcctgacctg catggttaga ccctgtctca aaaagaaaaa acaaacaaaa
     3361 aaccacataa acccccagac agtgatctct gaccttcaag tctgaccctt tccttccata
     3421 tcatggctcc taggacttcc tttcttggta ctctcaaccc tgattcttgg gctgaaagtg
     3481 tggccttcct tcccccagtg aggcctctga ttcagtccat aactctggat cctgatctta
     3541 aatgtgatct ctgacccttg cctctgccct ttgactccca ccgatgctaa ctccaaggtg
     3601 gttggaatcc caaccagcaa aatcttcctg actctatcag agtctgaaca aaggttcacc
     3661 cctaaaccac atgggtttca gtgtatagcc caggatgacc caactcccag ctctcttgcc
     3721 tcagccattc caagtagtgg gatggaccac cacacataac ctcaacccct atcttgactt
     3781 tggacctgtg acctttctgc tcaactgacc ccactcagtt tctcccttgt caggaactcc
     3841 accgaaggca cccccccacc ctcccaggtg ccctccccca gcctcccagg tgccctcccc
     3901 cagcctccca gatgccctcc ccccagcctc ccaggtgccc tcccccagcc tcccagatgc
     3961 cctcccccac cctcc
//
