LOCUS       XM_006242140             935 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NFAT activating protein with ITAM
            motif 1 (Nfam1), transcript variant X1, mRNA.
ACCESSION   XM_006242140
VERSION     XM_006242140.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242140.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006242140.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..935
                     /gene="Nfam1"
                     /note="NFAT activating protein with ITAM motif 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 126
                     samples with support for all annotated introns"
                     /db_xref="GeneID:362966"
                     /db_xref="RGD:1308316"
     CDS             101..898
                     /gene="Nfam1"
                     /codon_start=1
                     /product="NFAT activation molecule 1 isoform X1"
                     /protein_id="XP_006242202.1"
                     /db_xref="GeneID:362966"
                     /db_xref="RGD:1308316"
                     /translation="MASAVWGPGGISAPLQPAPSRVLPPFLRLLLVPWTLQLAGGITV
                     THTGLPIRVLLANTDMSFSCKIHNFLGTEIFMFTVSFFYMDIHGEKSSEKPIACQPRP
                     GMENQTMDCMVQLSLPNASATGTYYCRVKGHVTSQSDGIFILVRDTGYQPPSFKVQEA
                     LLLSFTGLLSVLGVLGTALLFWKKKQIAVLGKHTAKTCPSPKPTIGTTKPPAESIYTS
                     LQRRETEVYACIEGETGSPVSSQSPDTKEKMNRVEDDREFNLVYENL"
ORIGIN      
        1 gaactgtagc tgctggcagg ggctttagtc tccagtgaac taaagaggaa ggagggacgt
       61 tctttgatca agtgtccggt tcacggtatc ccatggagag atggcttctg cggtgtgggg
      121 cccgggtggg atatctgcac ccctccagcc tgctcccagc cgagtgcttc ctcccttcct
      181 ccgtttgctg ctggtaccct ggaccctgca gctagcagga gggataacag tgacccatac
      241 cggccttcct atcagggtct tgctggcaaa cacggatatg tcctttagct gcaaaatcca
      301 caacttccta ggaaccgaga tcttcatgtt caccgttagc ttcttttaca tggatatcca
      361 tggcgagaaa agctcggaga agccaattgc ctgccaaccc aggcctggca tggagaacca
      421 gaccatggat tgcatggttc aactcagcct gccaaatgca tcagccacag gcacttacta
      481 ctgcagagtc aaaggacatg tgacaagtca gagcgacggc atcttcattc tggtcagaga
      541 cacagggtac cagccacctt cattcaaggt ccaggaggct ctgctgctta gctttaccgg
      601 cctgctcagt gtcctgggtg tgctgggcac ggcgctgctg ttctggaaga agaaacagat
      661 agcggttctg ggcaagcaca ctgctaagac atgccctagt cccaaaccca ccatcggaac
      721 cacaaagcct ccagcagaat ccatctacac gtccctacag cgtcgagaga cagaggtcta
      781 cgcctgcatc gagggagaga ctggtagccc tgtctccagc caaagtccag acaccaagga
      841 gaaaatgaat agagttgaag atgaccgtga atttaacctc gtctatgaaa atctttagaa
      901 gttttacagg ctccgagcct tgtcttggat tagga
//
