LOCUS       NM_001414351            5230 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus neuralized E3 ubiquitin protein ligase 4
            (Neurl4), transcript variant 1, mRNA.
ACCESSION   NM_001414351 XM_006246712
VERSION     NM_001414351.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5230)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 18, 2022 this sequence version replaced XM_006246712.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-324               JAXUCZ010000010.1  55124324-55124647
            325-769             JAXUCZ010000010.1  55125465-55125909
            770-835             JAXUCZ010000010.1  55126113-55126178
            836-1134            JAXUCZ010000010.1  55126323-55126621
            1135-1246           JAXUCZ010000010.1  55126789-55126900
            1247-1335           JAXUCZ010000010.1  55126990-55127078
            1336-1408           JAXUCZ010000010.1  55127706-55127778
            1409-1673           JAXUCZ010000010.1  55127881-55128145
            1674-1855           JAXUCZ010000010.1  55128386-55128567
            1856-1941           JAXUCZ010000010.1  55128676-55128761
            1942-2104           JAXUCZ010000010.1  55128883-55129045
            2105-2303           JAXUCZ010000010.1  55129141-55129339
            2304-2380           JAXUCZ010000010.1  55129425-55129501
            2381-2459           JAXUCZ010000010.1  55129584-55129662
            2460-2635           JAXUCZ010000010.1  55130009-55130184
            2636-2767           JAXUCZ010000010.1  55130269-55130400
            2768-2913           JAXUCZ010000010.1  55130681-55130826
            2914-3138           JAXUCZ010000010.1  55130899-55131123
            3139-3237           JAXUCZ010000010.1  55131218-55131316
            3238-3399           JAXUCZ010000010.1  55131411-55131572
            3400-3564           JAXUCZ010000010.1  55131746-55131910
            3565-3723           JAXUCZ010000010.1  55132566-55132724
            3724-3903           JAXUCZ010000010.1  55133044-55133223
            3904-3991           JAXUCZ010000010.1  55133335-55133422
            3992-4099           JAXUCZ010000010.1  55133526-55133633
            4100-4244           JAXUCZ010000010.1  55133734-55133878
            4245-4357           JAXUCZ010000010.1  55134031-55134143
            4358-4523           JAXUCZ010000010.1  55134218-55134383
            4524-5230           JAXUCZ010000010.1  55135265-55135971
FEATURES             Location/Qualifiers
     source          1..5230
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..5230
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /note="neuralized E3 ubiquitin protein ligase 4"
                     /db_xref="GeneID:303248"
                     /db_xref="RGD:1308056"
     exon            1..324
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..4728
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /note="isoform 1 is encoded by transcript variant 1;
                     neuralized-like protein 4; neuralized homolog 4"
                     /codon_start=1
                     /product="neuralized-like protein 4 isoform 1"
                     /protein_id="NP_001401280.1"
                     /db_xref="GeneID:303248"
                     /db_xref="RGD:1308056"
                     /translation="MAAGSGGSGGSGAGPGPGPGPGGGGGPGSSGPGLGSSGGLGSGG
                     ELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSG
                     SIEIGVTALDPSVLDFPSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLVEGDR
                     VGVERTATGELRLWVNGRDCGVAATGLPARVWAVVDLYGKCTQITVLPPEPGFSPSTP
                     ISTPPLEPLAPPEDSALSEQGTSVDEAFMVSPAQARPETFPNSLDSHNDFASMELSEV
                     VSNAILSAYNGGLLNVSLSSPPAADGLASSGSATSPILTSNDALLFHEKCGTLIKLSN
                     NNKTAERRRPLDEFNNGVVMTNRPLRDNEMFEIRIDKLVDKWSGSIEIGVTTHNPNSL
                     EYPATMTNLQSGTIMMSGCGILTNGKGTRREYCEFSLDELQEGDHIGLTRKSNSALHF
                     FINGIDQGVATPLTPPVVYGVVDLYGMAVKVTIVHNNNHSDRLRRNNAILRALSPEGA
                     LRRAAPAASAEPERLLFHPNCGQKAAITHEGRTALRPHATDDFNHGVVLSSRALRDGE
                     VFQVRIDKMVDKWAGSIEIGVTTHNPAYLQLPSTMTNLRSGTWMMTGNGVMHNGTTIL
                     DEYGHNLDRLKAGDTVGVVRREDGTLHFFVNGMTQGPAAWNVPPGVYAVVDLYGQAAQ
                     ATIVDDVEVPPVSEPLPEGNNQMSPSSPASAVGGSDLRFHQLHGSNAVITNGGRTALR
                     HNCRSEFNDAIVISNRALRDGELFEIVIQKMVDRWSGSIEAGVTAIRPEDLEFPNTMT
                     DIDYDTWMLSGTAIMQDGNTMRNNYGCDLDALGTGARIGMMRTAKGDLHYFINGQDQG
                     AACSGLPPGKEVYAVVDLYGQCVQVSITNATGPMDNSLATSNTATEKSFPLHSPVAGV
                     AHRFHSTCGKNVTLEEDGTRAVRVAGYAHGLVFSTKELKAEEVFEVKVEELDEKWAGS
                     LRLGLTTLAPEDMGPGAGSGPGLPPSLPELRTKTTWMVSSCEVRRDGHLQRMNYGRNL
                     ERLGVGSRVGIRRCADDTMHILVDGEDMGPAATGIAKNVWAVLDLYGPVRSVAIVSST
                     RLEEPEGTQPPSPSSDTGSEGEEDEEGEEHGLRGQNQVGVMPTALEFLENHGKNILLS
                     NGNRTATRVASYNQGIVVISQPLVPHMLVQVRIDFLNRQWTSSLVLGVITCPPERLNF
                     PASACALKRAAWLLRGRGVFHNGLKICEKFGPNLDTCPEGTILGLRLDSSGGLHLHIN
                     GVDQGVAVPDVPQPCHALVDLYGQCEQVTIVSPDPGTASGKTAGTQGDMEKADMVDGI
                     KESVCWGPPPAASPLKSCEYHALCSRFQELLLLPEDYFMPPPKRSLCYCESCRKLRGD
                     EAHRRRGEPPREYALPFGWCRFNLRVNPHLEAGTLTKKWHMAYHGSSVAVVRRVLDRG
                     ELGAGTTSILSCRPLKGEPGVGFEEPGENCAPPREEQPPAVLLSPSLQYAGAETLASK
                     VQFRDPKSQRTHQAQVAFQVCVRPGSYTPGPPSAALRELPDQHFSPSELEWVTKEKGA
                     TLLYALLVRVE"
     exon            325..769
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            770..835
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            836..1134
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1246
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1335
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1408
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1673
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1855
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..1941
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..2104
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2105..2303
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2304..2380
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2381..2459
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2460..2635
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2636..2767
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2768..2913
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            2914..3138
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3139..3237
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3238..3399
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3400..3564
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3565..3723
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3724..3903
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3904..3991
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            3992..4099
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            4100..4244
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            4245..4357
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            4358..4523
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
     exon            4524..5230
                     /gene="Neurl4"
                     /gene_synonym="Gps2l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcgcggct gtcgcgcggc cgcggtatca gcggcgatgg cggcggggtc gggtgggagt
       61 gggggctctg gggcaggccc cgggccaggg ccggggccag gcgggggagg gggccctggc
      121 agcagcggac caggactggg gtccagcggg ggtctcggca gtggcgggga actgcacccg
      181 cgcactgggc gcttggtaag cctgtcggcc tgtgggcgca cagcgcggcg gcagcagccg
      241 ggccaagagt ttaaccacgg gctggtgctg agccgagaac ccttgcgcga cggacgcgtc
      301 ttcactgtcc gcatcgaccg caaggtcaac tcctggagtg gctccatcga aatcggagtg
      361 acagcactgg atcctagtgt gctggacttc ccaagcagtg ccactgggct gaagggaggg
      421 tcctgggtag tgtcaggctg ctcagtgctt cgggacgggc gctctgtgtt ggaggaatat
      481 ggccaggacc tggaccagct tgtggaaggg gaccgtgtgg gtgtggaacg cacagccact
      541 ggggagctcc ggctctgggt gaatgggcgg gattgtggtg tggcagccac aggcctgcct
      601 gctcgagtct gggctgtcgt ggacctttat ggcaagtgca cccagatcac tgtgctgccc
      661 cctgagccag gcttcagccc ttctactcct atctccacac ctccccttga gcccttggcc
      721 cctccagaag attctgccct gtcggaacag gggacttctg tggatgaagc cttcatggtg
      781 tccccagcgc aggcccggcc ggagacgttt cctaacagcc ttgattcgca taatgacttt
      841 gccagcatgg aactgtctga ggtggtgagc aacgccatcc tgtctgccta caatgggggc
      901 cttcttaatg tgagcctgag ctccccacca gctgcagacg gactggcatc cagtgggtca
      961 gccacctctc ccatcctcac ttccaatgat gccctgctct ttcatgagaa gtgtggaacc
     1021 ctcatcaaac tcagcaacaa taataagacg gctgagcgtc ggaggcccct ggatgaattc
     1081 aacaatggag ttgtcatgac caaccgtcca cttcgggata atgaaatgtt tgagatccgt
     1141 attgacaagc ttgtagacaa atggtctggt tccatcgaga ttggtgtcac cacccacaat
     1201 cccaacagct tggagtatcc agccaccatg accaacctgc agtcaggcac catcatgatg
     1261 agtggctgtg ggatcctgac caacggcaag ggtacgcgcc gcgagtactg tgagttcagt
     1321 ctggatgagc tgcaggaggg tgaccatatt ggcctcacga ggaagtccaa ctctgccctg
     1381 cacttcttca ttaatggcat cgatcagggt gtagctactc cgttgacacc accagtagtc
     1441 tatggtgtgg tagacttgta tggaatggct gtgaaagtga ccatagtcca taataataac
     1501 cacagtgacc gtctccgccg gaacaatgcc atcctgaggg cgctgtcccc cgagggtgcc
     1561 cttcgtcgtg ccgcccctgc agcctcggca gagcctgaac gcctgctctt ccaccctaac
     1621 tgtggccaga aggcggccat cacccacgag ggacgcaccg ctttgaggcc ccatgccact
     1681 gatgacttca atcatggcgt ggtactgagc agcagagccc tccgggatgg agaggtgttc
     1741 caggtgcgca ttgacaagat ggtggacaaa tgggctggct ccattgagat tggcgtcact
     1801 acccacaacc ctgcctacct ccagttgccc tctaccatga ccaatttacg ctctgggacc
     1861 tggatgatga ctgggaatgg ggtaatgcac aatggaacaa ccatcctaga tgaatatgga
     1921 cacaatctgg accgcctcaa ggcaggggac acagtaggtg tggtacggcg agaggatgga
     1981 acgctccact tctttgtcaa tggaatgact cagggccctg ctgcctggaa tgtacccccg
     2041 ggtgtctatg ctgtcgttga tctctacggc caagctgccc aggctactat tgtggatgac
     2101 gtggaagtcc ctccagtctc tgagccactc ccggaaggaa acaaccagat gtctcctagt
     2161 tctccagcct cagcagttgg gggttccgac ctgcgcttcc accagctgca tggcagtaat
     2221 gcagtcatca ctaatggtgg ccgcactgct ctccgccata actgccgcag cgagttcaat
     2281 gatgccattg tcatttccaa ccgagccctg cgggatggag aactgtttga gattgtcatt
     2341 cagaagatgg tagaccgctg gtcaggttcc atcgaagctg gagtgactgc tattcgtcct
     2401 gaagacctag agtttcccaa caccatgaca gacattgact atgatacgtg gatgctgagt
     2461 ggtacagcta tcatgcaaga tggcaacacg atgcgcaaca actatgggtg tgatctggac
     2521 gcactgggca caggtgcacg catcggcatg atgcgaactg ccaagggtga tctgcactat
     2581 ttcattaatg gacaggacca aggcgctgcc tgctcaggct tgcctccggg taaagaggtg
     2641 tatgcagtag tggatctcta tggccagtgt gtccaagtgt ctattaccaa tgctaccggc
     2701 cccatggaca acagcctggc aaccagcaac actgccactg agaaatcatt tcccttgcat
     2761 tccccagtgg cgggtgtagc acaccgattc catagcactt gtggcaagaa tgtcactctg
     2821 gaggaggatg gcacacgggc agtccgtgtg gctggctatg cgcatggcct cgttttcagc
     2881 accaaggagc tcaaggcgga agaagttttt gaggtgaagg tggaagagct agacgagaag
     2941 tgggcaggct ccctccggct ggggctgacc acactagcac ccgaggacat ggggcctgga
     3001 gcaggcagtg ggccagggct gcctccttcc ttgcctgaac tccggacaaa gaccacttgg
     3061 atggtgtcca gctgtgaagt gagacgtgat gggcacctcc aaaggatgaa ctatggtcgg
     3121 aacctcgaga gacttggggt gggaagccgt gtgggcattc gtcggtgtgc agatgatact
     3181 atgcacatct tggtagatgg agaagatatg gggcctgcag ccaccggcat tgccaagaat
     3241 gtctgggctg tgttggatct ctatgggcca gtacgcagtg tggctattgt cagctccaca
     3301 agactggagg aaccagaagg cacccagcca ccttctccta gctcagatac tggcagtgag
     3361 ggcgaggaag atgaggaggg cgaggaacat gggctgagag gccagaatca agtgggtgtt
     3421 atgcccacag cccttgaatt cctggagaac catgggaaga atatcctctt atccaacggg
     3481 aaccgtacag ccactcgggt ggccagctac aaccagggca tcgttgtcat cagccagccc
     3541 ctggtacccc atatgcttgt tcaggtgcgg atagatttcc tgaaccgaca gtggacatcc
     3601 tctcttgttc tgggagtcat cacctgccca cctgagaggc ttaacttccc tgcctctgct
     3661 tgtgccctta aacgggcagc ctggctcctg cggggccgtg gcgtcttcca caatggtctg
     3721 aagatctgtg agaagtttgg gccaaatctt gacacctgcc ctgaaggcac catcctggga
     3781 ctgaggctag actcctctgg agggctccat ctccacatca acggggtgga ccaaggggta
     3841 gctgtaccag atgtgcccca gccatgccat gcacttgtgg acctctatgg acagtgtgag
     3901 caggtgacaa ttgtgagccc tgacccaggg actgccagtg ggaagactgc tggaacccaa
     3961 ggggacatgg aaaaagctga tatggtagac ggtatcaagg agagtgtgtg ctggggtcca
     4021 ccgcctgctg ctagcccttt aaagagctgc gagtaccatg ccctttgctc ccgcttccaa
     4081 gaactgctgt tgcttcctga agattatttc atgcctccac caaagcgtag cttatgctac
     4141 tgtgagtctt gccggaagtt gcgaggagat gaggcccaca ggcgccgagg agagcctccc
     4201 cgagaatatg ccctgccttt tggatggtgc aggttcaatc ttagggtgaa tccccatctg
     4261 gaagctggca cacttactaa gaagtggcac atggcctatc atggaagcag cgtagcagtt
     4321 gtacggagag tgctggaccg aggggaattg ggagcaggaa ctacctccat cctgagctgc
     4381 cgacccttga agggagagcc tggggtgggc tttgaggagc ctggtgagaa ctgtgcacct
     4441 ccccgggagg agcagccccc tgcagtgctg ctctccccct cccttcagta cgctggggca
     4501 gagaccctgg cctccaaagt gcaattccgg gacccaaaat cccagcggac acaccaggct
     4561 caggtggcct ttcaggtgtg tgtgcgccct ggctcctata ctcctggccc tccctctgcg
     4621 gccctcagag aacttcctga ccagcacttc agcccatcag aacttgagtg ggtcactaag
     4681 gagaagggag ccacactcct ctatgccctg ctggtacggg tggaataagg ggtgagatac
     4741 cactactcca agcacagccg ggcctcaagc ccaggactct tgaatgacga ctgcctccac
     4801 ctcattccag tgacttatgg catgtacagg tgctttcctg gccggaggag cacgtagaca
     4861 ggctttgatt tagaccaggt gtgaagcaca tctctacatt cagggcccag cacactccct
     4921 ctgccgagag ggagcttgta gggagcccag ctccagtctc tgggtccccc cttcatgcac
     4981 tgacttgggg aacatgactc cctattatta ccctccccca tatcacttaa tttatttccg
     5041 tttttgtttc tggttactgt gaatcccaaa ggagtctctg tgcccacatg aagctgcttt
     5101 ttccatggcc accgggcgcc atgaggcggg agtgggtaag gaaggggcgg cccgaggaag
     5161 ctgtgggccc tctgtacagt tgttactgac tctgatttct aaggagccaa taaatactgt
     5221 cttcagagca
//
