LOCUS       XM_006231511            3535 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neuralized E3 ubiquitin protein ligase
            1 (Neurl1), transcript variant X4, mRNA.
ACCESSION   XM_006231511
VERSION     XM_006231511.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006231511.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006231511.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3535
                     /gene="Neurl1"
                     /gene_synonym="Neurl; Neurl1a"
                     /note="neuralized E3 ubiquitin protein ligase 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 54 ESTs, 1 long SRA read, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 45 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309459"
                     /db_xref="RGD:1307021"
     CDS             119..1792
                     /gene="Neurl1"
                     /gene_synonym="Neurl; Neurl1a"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase NEURL1 isoform X3"
                     /protein_id="XP_006231573.1"
                     /db_xref="GeneID:309459"
                     /db_xref="RGD:1307021"
                     /translation="MGGQITRNTLHDSIGSSFPVPSHRCHHKQKHCPPALSGGGLPAT
                     PLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSG
                     ALRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGR
                     VFYRINESAAMLFFSGVRTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALR
                     RPSLRCEADEARLSVSLCDLNVPGADGEDGAPPAGCPIPQNSLNSQHSRALPAQLDGD
                     LRFHALRAGAHVRILDEQTVARLEHGRDERALVFTSRPVRVAETIFIKVTRSGGARPG
                     ALSFGVTTCDPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGEL
                     HLSHNGAPAGMQLCVDASQPLWMLFSLHGAITQVRILGSTIMAERGGPSLPCSPASTP
                     TSPSALGSRLSDPLLSTCGSGPLGGSAGGTAPNSPVSLPESPVTPGLGQWSDECTICY
                     EHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYRSS"
ORIGIN      
        1 ggctggcctc gggggagggc agggggggag gaggagggga actggcggtc agggcagctc
       61 ggtgaggtga cgaggctggc cagccaaacg gaggtggcca agctaccagc agcctgagat
      121 ggggggacag atcacaagga acactctcca cgactccatc gggagctcct tcccggtccc
      181 ctctcaccga tgccatcaca agcagaagca ttgcccgccc gcgctgtcag gtggggggct
      241 cccggccaca ccgctgctct tccaccccca cactaagggc tcccagatcc tcatggacct
      301 cagccacaag gccgtcaaga ggcaggccag cttctgtaat gccatcacct tcagcaaccg
      361 ccccgtcctc atctacgagc aagtcaggct gaagatcacc aagaagcagt gctgctggag
      421 cggggccctg cgacttggct tcaccagcaa ggacccttcc cgcatccacc ccgactcact
      481 gcccaagtac gcctgccctg acctggtgtc ccagagtggc ttctgggcca aagcgttgcc
      541 tgaggagttt gccaacgagg gcaacatcat tgccttctgg gtggacaaga agggccgagt
      601 cttctaccgg atcaatgagt cggctgccat gctgttcttc agcggggttc gaacggcgga
      661 cccgctctgg gccctggtgg acgtctacgg cctcacacgg ggtgtccagc tgctagacag
      721 cgagctggtg ctgcctgact gcctgaggcc gcgctccttc accgcgctgc ggcggccgtc
      781 gctgcggtgc gaggcggacg aggcgcgcct gtctgtgagc ctgtgcgacc tcaacgtgcc
      841 gggagccgac ggcgaggacg gcgcaccgcc cgccggctgc ccgatcccgc agaactcgct
      901 caactctcag cacagccgcg cgctgccggc gcagctcgac ggcgacctgc gcttccacgc
      961 tctgcgcgcc ggcgcgcacg tccgcatcct ggacgagcaa accgtggcgc gcctagagca
     1021 cgggcgcgac gagcgcgcgc tcgtcttcac cagccggccg gtgcgcgtgg ccgagaccat
     1081 cttcatcaag gtcacgcgct caggcggtgc gcgaccagga gcgctgtcct tcggggtcac
     1141 cacgtgtgac cctggcacgc tgcggcccgc cgacctgccc ttcagccccg aggccctggt
     1201 ggaccgcaag gagttctggg cggtgtgtcg cgtgcctggg cctctgcaca gtggtgacat
     1261 cctgggcctg gtggtcaatg cggacggaga gctgcaccta agtcacaacg gcgcgccggc
     1321 cggcatgcag ctatgcgtgg acgcctcgca gcccctctgg atgctcttca gcctgcacgg
     1381 cgccatcacg caggtccgca tccttggctc caccatcatg gctgaacggg gtggcccatc
     1441 tctcccctgc tcacctgcct ccactccaac ctcgcccagt gccctgggca gccgcctctc
     1501 tgaccccctg ctcagcacat gcggttctgg gcccctgggt ggctctgctg gcggaacagc
     1561 ccccaactca cctgtgagcc tgcccgagtc accagtgacc ccgggtctgg gccagtggag
     1621 cgatgaatgc accatttgct atgaacacgc agtggataca gtcatctaca cgtgtggcca
     1681 catgtgcctg tgctactcct gtggcctgcg cctcaagaag gccctgcacg cctgctgccc
     1741 catctgccgt cgccccatca aggacatcat caagacctac cgcagctcct agcccactgc
     1801 agagccccac ccgcacgccc acttctgcag actgcagccc agcaccagcc gagggcaaag
     1861 ccaacagggt cccttccttc tacagtttgc aaactctccc tcctttgtcc attaaacatg
     1921 ggaaaccaag gtccctgaag gtttgggctg agagggtctc aggcagggag gtggggcaca
     1981 agtagtgaac ggaggggggg gagaagggta ccccaccatc tctcctcttt acacagattt
     2041 ctgcatgctg aggggctgaa gtagcgtttc agcttgttgc catccctccc gagctaggca
     2101 gatttctagg ttgtgcagcc cgcgtggcat cttggagaga gttagcgaac atgtagcttc
     2161 tgggcagctg caaactgcat gccgtgtctc tttctcctta cccacagcgg gtagacagac
     2221 aggctgcaga tcccaagtcc tacgtccttg acctcacgtc gacctgccac gtccaggacg
     2281 ccccgtttgc cctgattttc gccaatcatc tcactggtgc cgtttcccag ggtgccctgc
     2341 ggtaaaggct gactcgggcc tttctgttgt cggggtctca aaagaacagg tccacagtca
     2401 cacttaaggc ctgccctccc tcatctcggc ctgggctggt cttgccatcg tttgcctggg
     2461 agggacagga cccttcggtg gggtgggggt ttcctggccc atagacagcc ccttttcctt
     2521 attttaattt atttatttat ttggttgatg ggtcttgttg atgggttatg ttccaacctg
     2581 ggttctccta aaatactgct gttgtgcggg gggagggctg ccaggtgaag ggaagcaagg
     2641 agtagccacc cagaataatc tgcccccaac acaaggctca tgggcagtcc tgctcaccct
     2701 gaggtagaat tccaggctgg aggcctccca agaggtggat gagcctctca tgggtgggaa
     2761 ccacccacat ccacctgtgc ccttcctctc tggattggag ctccattagt gtggctggtt
     2821 ctgatgtctt taaggacatc agacgttctg gaaggttgtc aacatgtggg tcagggacca
     2881 gaatagagac cctagttaga agagggagga cggatcctga aagccaggct ctgctcctaa
     2941 gggggtgtct gctatttacg gcccccagtc ctacctgcct gttctgggtt actgtggagt
     3001 tgtagcctag gctttcccag cctttcagtc ctcggccctc atggctggtt ttatacccac
     3061 agaggtgact tctgccttaa gaggcaaggt ctgtgtctct gtcccggcca ctgggcagcc
     3121 gtgtggctct gaccacaggt caccccctcc cccaaactcc agcttcccct gggtaaaagt
     3181 ttgggggtgg aactttttcc gtgcagctcc tgggagttct tctcaggtct cttcggagga
     3241 atgtactggg gaagccttga gaatggatgc cagggtaagc ctttgcccac acgggggagt
     3301 ctgggccacc cctagtctca cctctccagt cactggccct ggtaggttct ttcaggctgg
     3361 agctggcacg tcgagctggg gctcatccta gcggtggggg aaaggcccca gtacagagct
     3421 gcgtggctgg agatgggaaa agaagccatt gtccatcctg ctagttcaga ggtagcattg
     3481 cctcctttgt gaactgggtc actgtgtttg tgaataaagg tgatttcgta ccagc
//
