LOCUS       NM_001414970            1839 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus nephrocan (Nepn), mRNA.
ACCESSION   NM_001414970 XM_006256491
VERSION     NM_001414970.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 16, 2022 this sequence version replaced XM_006256491.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06621351,
                              SAMN14984027 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-221               JAXUCZ010000020.1  32329314-32329534
            222-1123            JAXUCZ010000020.1  32337405-32338306
            1124-1839           JAXUCZ010000020.1  32341447-32342162
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q11"
     gene            1..1839
                     /gene="Nepn"
                     /gene_synonym="RGD1307755"
                     /note="nephrocan"
                     /db_xref="GeneID:309775"
                     /db_xref="RGD:1307755"
     exon            1..221
                     /gene="Nepn"
                     /gene_synonym="RGD1307755"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..1571
                     /gene="Nepn"
                     /gene_synonym="RGD1307755"
                     /codon_start=1
                     /product="nephrocan precursor"
                     /protein_id="NP_001401899.1"
                     /db_xref="GeneID:309775"
                     /db_xref="RGD:1307755"
                     /translation="MHLLWAFLLWLSLSNVLGANCPGRCSCDSLQSVQCYRLLEVPSG
                     IPSTTRRLYISHSRIQHLQLSNLTQLLALEDFILLASGTESIENDTFKTLTTLKTLEL
                     WKNKLRRVPSALPANLEVLKLNDNSICALHGSDFEGLSNLKVLELKNNLISSLSPSML
                     SSLVSLQSLLVDGNNIESVTGPLSLPNLKYMSMEKNKLHLISGNVFTSLQNLQFLSFS
                     GNFLTKIPINLPKSLLSLKMERNQLKVVRFRDMRHLENLSHLYLSENLLSSIDGAQLL
                     TNLTTLEASQNRLQMLPPRLPSRLQKLDCSSNFIQRVTAPEFQDLRDLKHLFLDNNVV
                     SLFEAGALQKCSQLSNLALEQNLLLSIPLRLPKTLARLDLKGNAIQDMAERELRDLKQ
                     LQVLNLRNNKISALDLKALEGLPRLRHLYLDGNPWNCTCSLLRAREVLKAKGTDVKGG
                     QCAAPAERQGESWMSSKKILKQCEHHLEQNERGKETKKKPKPEDSSSIRPSMDDDDDD
                     YEID"
     exon            222..1123
                     /gene="Nepn"
                     /gene_synonym="RGD1307755"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1839
                     /gene="Nepn"
                     /gene_synonym="RGD1307755"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcttgctac ctccaaacct ctgggttgga cgatgcacct gctttgggct tttcttcttt
       61 ggctctctct tagcaatgtc ctcggtgcaa actgtccggg acgatgcagc tgtgattctc
      121 tgcaatctgt acagtgctac aggctcctgg aagtcccgtc gggcatcccc tccaccacca
      181 ggaggctcta cattagccac agcagaatcc agcaccttca gctatctaac ctcacccagc
      241 tgttggctct ggaagatttt attctgctgg ccagtggaac agagtctatt gaaaacgaca
      301 ccttcaaaac tctgactaca ttgaagaccc tagaactttg gaaaaacaaa ttgagacgag
      361 tccccagtgc tctcccagcc aaccttgagg tgttaaaatt gaatgataat tctatatgtg
      421 ctctacatgg atcagatttt gaaggactga gcaacttgaa agtccttgaa ctcaaaaaca
      481 acttgatctc ctccctgtct cccagcatgc tctcctcgct cgtcagtttg caaagtttgc
      541 tggtggatgg taataacata gagtctgtga ctggacctct gagcctcccg aatctcaagt
      601 acatgagcat ggagaaaaac aagctccatc ttatatctgg gaacgtcttc acgtctctgc
      661 agaatttgca gttcctcagt ttcagtggta attttctgac taaaattcct ataaatctcc
      721 ccaaatcctt gctgtcttta aagatggaga gaaaccagct caaagtggtt aggtttcgag
      781 atatgagaca cttggagaac ctgtcccatc tttacctgtc ggagaacctc ctgtcttcca
      841 tagatggggc acaactgctg accaatttaa caactctgga ggcttctcaa aaccggcttc
      901 aaatgttgcc tcccaggcta ccatcaaggt tacagaagct tgactgtagc agtaacttca
      961 ttcagagagt gacagcacca gaattccagg acctcagaga cctgaaacat ttgtttctag
     1021 acaacaatgt tgtcagcttg tttgaggctg gggcccttca gaagtgttct cagctgtcca
     1081 acctggccct ggagcagaat ctgctgttgt ccatccctct gaggctccct aagaccctgg
     1141 ccaggctgga cctcaagggc aatgccatcc aggacatggc tgaaagggag ctcagggacc
     1201 tcaaacagct ccaggtcctc aacctgagga acaacaagat ctcggcctta gacctcaagg
     1261 cactggaggg cctgcctcgg ctccggcatc tgtacctaga tggaaacccc tggaactgca
     1321 cctgcagtct cctgcgagcc agggaagtcc tgaaggccaa gggcacggac gtgaaagggg
     1381 gacagtgtgc agccccggca gagcgacagg gggagagctg gatgtcctcc aagaagatcc
     1441 tgaagcaatg tgagcatcac ttagagcaga atgagagagg gaaagagacc aagaagaaac
     1501 ccaaaccaga agactcttcc agcattagac ccagcatgga tgacgacgac gacgattatg
     1561 aaatagatta gagatgagct ttgtttcccg tttagacaat gatttttaat gttctctgtc
     1621 ttaagcagaa acacgctatc atttagatcc tgcgagcctt ctttttattt ttacatggtt
     1681 cttgttattt tttgaagata aaataagggt taaggattcg ttaaaatgtg tgaggggaaa
     1741 aaaggtagac gtgtttcctg gcttgaaata atctgtgttt tagtctgaat ctgaggcaaa
     1801 taacaatgtg aaataaaatt atcatttgaa tcaacttca
//
