LOCUS       XM_039082413            5546 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neogenin 1 (Neo1), transcript variant
            X2, mRNA.
ACCESSION   XM_039082413
VERSION     XM_039082413.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082413.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5546
                     /gene="Neo1"
                     /note="neogenin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 ESTs, 4 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 137 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:81735"
                     /db_xref="RGD:619837"
     CDS             510..4955
                     /gene="Neo1"
                     /codon_start=1
                     /product="neogenin isoform X2"
                     /protein_id="XP_038938341.1"
                     /db_xref="GeneID:81735"
                     /db_xref="RGD:619837"
                     /translation="MAAEREAGRLLSTSSSRRCCPPRPLLLLLPLLLLLGRPASGAAA
                     AKNGSPPQSAGASVRTFTPLYFLVEPVDTLSVRGSSVILNCSAYSEPSPNIEWKKDGT
                     FLNLVSDDRRQLLPDGSLFISNVVHSKHNKPDEGFYQCVATVDNLGTIVSRTAKLAVA
                     GLPRFTSQPEPSSIYVGNSGILNCEVNADLVPFVRWEQNRQPLLLDDRIVKLPSGTLV
                     ISNATEGDEGLYRCIVESGGPPKFSDEAELKVLQESEEMLDLVFLMRPSSMIKVIGQS
                     AVLPCVASGLPAPVIRWMKNEDVLDTESSGRLALLAGGSLEISDVTEDDAGTYFCVAD
                     NGNKTIEAQAELTVQVPPEFLKQPANIYARESMDIVFECEVTGKPAPTVKWVKNGDVV
                     IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLIILEHDVAIPTLPP
                     TSLTSATTDHLAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFY
                     TKEGVARERVENTSQPGEMQVTIQNLMPATVYIFKVMAQNKHGSGESSAPLRVETQPE
                     VQLPGPAPNIRAYATSPTSITVTWETPLSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS
                     YTINGLKKYTEYSFRVVAYNKHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIV
                     IHWQPPSSATQNGQITGYKIRYRKASRKSDVTETVVTGTQLSQLIEGLDRGTEYNFRV
                     AALTVNGTGPATDWLSAETFESDLDESRVPEVPSSLHVRPLVTSIVVSWTPPENQNIV
                     VRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA
                     VTRPHTDTSEVDLFVINAPYTPVPDPTPMMPPVGVQASILSHDTIRITWADNSLPKHQ
                     KITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW
                     SMTAHGATFELVPTSPPKDVTVVSKEGKPRTIIVNWQPPSEANGKITGYIIYYSTDVN
                     AEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKALGS
                     AGKGGRLPDLGSDYKPPMSGSNSPHGSPTSPLDSNMLLVIIVSIGVITIVVVVIIAVF
                     CTRRTTSHQKKKRAACKSVNGSHKYKGNCKDVKPPDLWIHHERLELKPIDKSPDPNPV
                     MTDTPIPRNSQDITPVDNSMDSNIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFD
                     SQPPQPVISAHPIHSLDNPHHHFHSSSLASPARSHLYHPSSPWPIGTSMSLSDRANST
                     ESVRNTPSTDTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPTAHVRPSHP
                     LKSFAVPAIPPPGPPIYDPALPSTPLLSQQALNHHLHSVKTASIGTLGRSRPPMPVVV
                     PSAPEVQEATRMLEDSESSYEPDELTKEMAHLEGLMKDLNAITTA"
ORIGIN      
        1 cctgcccctg cgccagctcg gctccaccgc cgcggctgcc cgcgaagcga ccgccgggat
       61 tggagcccgg caggccgcgg ggcgcgaaga gggtgctcgc ggggagggga ggcgcgcgtg
      121 cgcggctgtg agcttgcgcg gcacggcgcg ctccggcgcc cgccccccac ccctcggtct
      181 ccgcccccct cgctctaccg tgaggagccc gagtcggcgg cgggtggcgg cgcctggaac
      241 ctggagagac cgagccaccc cccagctctc gcccggaatg tactgactct ccttctctgc
      301 tctcctcccc gccccgctgc aggagggagg cgcccgcagt ctttccccct gggcgcgcga
      361 gggggcctcg cgggccgggc cgggccgggc tggagccgag cctgcggcgc agggaccggc
      421 tgaagcgcgc tgagggaagg gcgcgagcgc tccgcggcgc tgtcgccgcc gccgccgccg
      481 ccgccgccgc cgccgctcgt ggggtagaga tggcggcgga gcgtgaagcc gggcgactcc
      541 tcagcacctc ctcctcccgg cgctgctgcc cgccacggcc gctgctgctg ttgctgccgc
      601 tgctgctgct gctcgggcgc ccggcgtccg gcgccgcggc cgcgaagaac ggctccccgc
      661 cgcagtccgc aggagccagt gttcgaacat tcactccgct ttattttctg gtggagccag
      721 tagacacact gtcagttaga ggctcttctg ttatattgaa ttgctccgca tattctgagc
      781 cttctccaaa tattgaatgg aagaaagatg ggactttttt aaacttagtg tcagatgatc
      841 gccgccagct tctcccagat ggatctctat tcatcagcaa tgtggtgcat tccaaacaca
      901 ataagcctga tgaaggtttc tatcagtgtg tagccacggt tgataatctt ggaactatcg
      961 tcagcagaac agccaagctc gcagtagcag gtcttccaag atttaccagc caaccagaac
     1021 cttcctcaat ctatgttgga aacagtggaa ttctgaattg tgaagttaat gcagatttgg
     1081 tcccatttgt tagatgggaa cagaacagac agccccttct tttggatgac aggattgtca
     1141 aacttccaag tggaacactg gttatcagca atgcgactga aggagacgag ggactctacc
     1201 gctgcattgt tgaaagtggt gggccaccaa agtttagtga tgaagctgaa ttgaaagttc
     1261 ttcaagaatc tgaggaaatg ctagacttgg tatttttgat gcgaccgtct tctatgatca
     1321 aagtcattgg tcagagtgca gtgttgccat gtgttgcctc aggacttcct gctccagtca
     1381 ttaggtggat gaagaatgaa gacgtgcttg acacagaaag ctctggaagg ttggccttgc
     1441 tagcaggagg cagtttggag atcagtgatg tcactgagga tgatgctggg acttatttct
     1501 gtgtagctga taatggaaat aagacaattg aagctcaggc agagcttacc gtgcaagtgc
     1561 ctcctgagtt cttgaaacaa cctgctaaca tatacgctcg tgaatccatg gatattgtat
     1621 tcgaatgtga agtcactggg aagccagctc caactgtgaa gtgggtcaag aatggggatg
     1681 tagttatccc aagtgattac tttaaaattg taaaggaaca taatcttcaa gttttgggtc
     1741 tggtgaaatc agatgaaggg ttctatcaat gcattgctga gaatgatgtt ggaaatgcac
     1801 aagctggagc tcagctgata atccttgagc atgatgttgc catcccaaca ttacctccca
     1861 cttcactgac cagtgccact actgaccatc tagcaccagc cacaacggga ccactacctt
     1921 cagctcctcg agatgtcgtg gcctccctgg tctctactcg cttcattaaa ttgacatggc
     1981 gtacacctgc atcagatcct catggagaca atctcaccta ttctgtgttc tacaccaagg
     2041 aaggggttgc tagggagcgt gttgagaata ccagtcagcc aggagagatg caggtgacta
     2101 ttcaaaactt aatgccagca actgtttaca tcttcaaagt tatggctcaa aacaagcatg
     2161 gttctggaga gagctcagct cctctacgag tagaaacaca gcctgaggtt cagctccctg
     2221 gcccagcacc taatatccga gcttatgcaa catcacctac ttctatcact gtcacatggg
     2281 aaacaccatt atctggcaat ggggaaattc aaaattacaa attgtactac atggaaaaag
     2341 gaacggataa agaacaggat gttgatgttt caagtcactc ctatactatt aatggactga
     2401 agaaatacac ggaatatagt ttccgagtgg tggcctacaa taaacatggt cctggagtgt
     2461 ctacacagga tgttgctgtt cgaacattat cagatgtgcc cagtgctgct cctcagaatc
     2521 tgtccttaga agtgagaaat tcaaagagta tagtgatcca ctggcagccc ccttcctcag
     2581 ccacacaaaa tgggcagatt actggctaca agattcggta tcgaaaggcc tcccgaaaaa
     2641 gtgatgtcac tgagaccgtg gtaactggga cacagctgtc tcagctgatt gaaggtcttg
     2701 atcgggggac agaatataac ttccgagtag ctgctctcac agtcaatggt acaggtcccg
     2761 caactgattg gctgtctgct gagacctttg aaagtgacct agatgaatct cgtgttcctg
     2821 aagtgcctag ctctcttcat gtccgtccac ttgtcactag cattgtagtg agctggactc
     2881 ctccagagaa ccagaacatt gtggttcgag ggtacgccat tggttacggc attggcagcc
     2941 ctcatgccca gaccatcaaa gtggactaca aacagcgcta ttacaccatc gaaaacttgg
     3001 atccaagctc tcattacgtg attaccttga aagcatttaa caatgttggt gaaggcatcc
     3061 ctctttatga gagtgctgtg accagacctc acacagacac ttctgaagtt gatttatttg
     3121 ttattaatgc tccatacact ccagtgccag atcccactcc catgatgcca ccagtgggag
     3181 ttcaggcttc cattctgagt cacgacacca taagaattac ctgggcagac aactccctgc
     3241 ccaaacacca gaagattaca gactcccgct actacacagt ccggtggaag accaacatcc
     3301 cagcaaacac caagtacaag aatgcaaacg caacaacgtt aagctatttg gttactggtt
     3361 taaagccaaa cacactgtat gagttctctg tgatggtgac caaaggcaga aggtcaagca
     3421 cgtggagtat gacagctcat ggtgctacct ttgaattagt tcctacttct ccacctaagg
     3481 atgtgacagt tgtgagtaaa gaaggaaaac cgagaacgat aatagtgaac tggcagcctc
     3541 cctctgaagc taatggcaag attacaggtt acatcatcta ttacagcaca gatgtgaatg
     3601 cagagatcca tgactgggtg attgaacctg ttgtgggaaa caggctgact caccagattc
     3661 aagagttaac actcgacaca ccatactact tcaaaatcca ggcccggaac tcaaagggca
     3721 tggggcccat gtctgaagct gtgcagttca gaacacctaa agccttagga tcagcaggga
     3781 aaggaggccg actaccagac ctaggatccg actacaaacc tccaatgagt ggcagcaaca
     3841 gcccccatgg gagccccacc tctcctctag acagcaatat gctgctggtc atcattgtct
     3901 ccatcggcgt catcaccatc gtagtggttg tgatcattgc tgtcttttgt acccggcgca
     3961 ccacctctca ccagaagaag aaacgagctg cgtgcaaatc agtgaacggc tcccataagt
     4021 acaagggcaa ttgcaaagac gtgaagcctc cggacctgtg gatccatcat gagaggctgg
     4081 agttgaagcc tattgacaag tctccagatc caaaccctgt catgactgat actccaatcc
     4141 ctcggaactc tcaagatatc acaccagtcg acaattccat ggatagcaat atccatcaaa
     4201 ggcggaattc atacagaggg catgagtcag aggacagcat gtctaccctg gctggaagga
     4261 ggggaatgag accaaaaatg atgatgccct ttgactctca gccacctcag cctgtgatta
     4321 gtgcccatcc catccattcc ctcgataacc ctcaccatca tttccactcc agcagcctcg
     4381 cttctccagc ccgcagtcac ctctaccacc caagcagccc atggcccatt ggcacatcca
     4441 tgtccctttc agacagggcc aattccacag aatctgttcg aaataccccc agcacggaca
     4501 ccatgccagc atcctcgtct caaacatgct gcactgatca tcaggatcct gaaggtgcta
     4561 ctagctcttc ttacttggcc agctcccagg aggaagactc aggccagagt cttcccacag
     4621 ctcatgttcg cccttcccac ccattgaaga gcttcgccgt accagcaatc ccacccccgg
     4681 gacctcctat ctatgatcct gcactgccaa gcacaccatt actgtcccag caagctctca
     4741 accatcacct tcactcagtg aaaacagcct ccatcgggac tttaggaagg agccggcctc
     4801 ctatgccagt ggttgtaccg agtgcccctg aggtacagga ggccaccagg atgctggaag
     4861 actccgagag tagctatgaa ccagatgagc tgaccaaaga gatggcccac ctggaaggac
     4921 tcatgaagga cctaaatgcc atcacaacgg cttgatgacc ttcacctgga caggactcca
     4981 agtctgagtc tcgaagtctt ggaactgaac cttgaaaaca aggaattgta cagagtacga
     5041 gaggacagca cttgagagca ggagccagca aaccagccag tgcctccatg tggggtcggc
     5101 tctgggcaca gccacctgcc ttctggtcag cctggatcat gcttgtgtcg aggcagcttc
     5161 cctctgcctg ctgatagcct gcaggactgg gcactatggg ccaagatttt gtgtccagag
     5221 aagaggcaag aagtacgacc tgccttttac tttgtggtca gtggctgtgt ctctgtgctg
     5281 caactgcatc acttttatgg agtgtagaca ttggcattta tgtacaattt tgtgtcctat
     5341 tttattttac cttaaaacac tatcagaagc caagtgatgt cctctgcaag cagttgacac
     5401 ttgactgctg ttcccagttc cttacggaaa gtcatcgaca gtgaggtggt ttgacaccat
     5461 tggcaggcat tggcttgttc tgggtttcgt ttctgttttt taattatgag acgttgcatc
     5521 ctctgccagc tgttaatcca tcactt
//
