LOCUS       NM_001170586            4772 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus nuclear export mediator factor (Nemf), mRNA.
ACCESSION   NM_001170586 XM_002726704 XM_002729650
VERSION     NM_001170586.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4772)
  AUTHORS   Long SW, Ooi JY, Yau PM and Jones PL.
  TITLE     A brain-derived MeCP2 complex supports a role for MeCP2 in RNA
            processing
  JOURNAL   Biosci Rep 31 (5), 333-343 (2011)
   PUBMED   21070191
REFERENCE   2  (bases 1 to 4772)
  AUTHORS   Bi X, Jones T, Abbasi F, Lee H, Stultz B, Hursh DA and Mortin MA.
  TITLE     Drosophila caliban, a nuclear export mediator, can function as a
            tumor suppressor in human lung cancer cells
  JOURNAL   Oncogene 24 (56), 8229-8239 (2005)
   PUBMED   16103875
REFERENCE   3  (bases 1 to 4772)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   4  (bases 1 to 4772)
  AUTHORS   Harter C, Ripoll C, Lenoir M, Hamel CP and Rebillard G.
  TITLE     Expression pattern of mammalian cochlea outer hair cell (OHC) mRNA:
            screening of a rat OHC cDNA library
  JOURNAL   DNA Cell Biol 18 (1), 1-10 (1999)
   PUBMED   10025504
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000164.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001170586.3.
            
            On Dec 9, 2020 this sequence version replaced NM_001170586.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from several strains because no single
            transcript was available for the full length of the gene. The
            extent of this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JACYVU010000164.1  64123891-64123989   c
            100-168             JACYVU010000164.1  64123148-64123216   c
            169-271             JACYVU010000164.1  64122895-64122997   c
            272-397             JACYVU010000164.1  64121633-64121758   c
            398-546             JACYVU010000164.1  64118700-64118848   c
            547-614             JACYVU010000164.1  64117230-64117297   c
            615-701             JACYVU010000164.1  64115357-64115443   c
            702-775             JACYVU010000164.1  64113199-64113272   c
            776-846             JACYVU010000164.1  64111627-64111697   c
            847-922             JACYVU010000164.1  64111357-64111432   c
            923-985             JACYVU010000164.1  64110803-64110865   c
            986-1063            JACYVU010000164.1  64109038-64109115   c
            1064-1272           JACYVU010000164.1  64108740-64108948   c
            1273-1458           JACYVU010000164.1  64108360-64108545   c
            1459-1522           JACYVU010000164.1  64107355-64107418   c
            1523-1611           JACYVU010000164.1  64106851-64106939   c
            1612-1715           JACYVU010000164.1  64101910-64102013   c
            1716-1778           JACYVU010000164.1  64101102-64101164   c
            1779-1891           JACYVU010000164.1  64097894-64098006   c
            1892-1949           JACYVU010000164.1  64094982-64095039   c
            1950-2008           JACYVU010000164.1  64094494-64094552   c
            2009-2129           JACYVU010000164.1  64094297-64094417   c
            2130-2382           JACYVU010000164.1  64092468-64092720   c
            2383-2425           JACYVU010000164.1  64090795-64090837   c
            2426-2475           JACYVU010000164.1  64090625-64090674   c
            2476-2629           JACYVU010000164.1  64087500-64087653   c
            2630-2707           JACYVU010000164.1  64086430-64086507   c
            2708-2902           JACYVU010000164.1  64085885-64086079   c
            2903-2935           JACYVU010000164.1  64083579-64083611   c
            2936-3036           JACYVU010000164.1  64081876-64081976   c
            3037-3080           JACYVU010000164.1  64081737-64081780   c
            3081-3160           JACYVU010000164.1  64081558-64081637   c
            3161-4772           JACYVU010000164.1  64079813-64081424   c
FEATURES             Location/Qualifiers
     source          1..4772
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..4772
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /note="nuclear export mediator factor"
                     /db_xref="GeneID:100322884"
                     /db_xref="RGD:2315525"
     exon            1..99
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..3238
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /note="serologically defined colon cancer antigen 1;
                     nuclear export mediator factor NEMF"
                     /codon_start=1
                     /product="ribosome quality control complex subunit NEMF"
                     /protein_id="NP_001164057.2"
                     /db_xref="GeneID:100322884"
                     /db_xref="RGD:2315525"
                     /translation="MKTRFSTVDLRAVLAELNANLLGMRVNNVYDVDNKTYLIRLQKP
                     DFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQ
                     FGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDEADDVKFAVRERYPIDHARA
                     AEPLLTLERLTEVIARAPRGELLKRVLNPLLPYGPALIEHCLIENGFSGNVKVDEKLE
                     SKDIEKILVCVQRAEDYLEKTANFNGKGYIIQKREVKPSLDANKPAEDILTYEEFHPF
                     LFSQHLQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRL
                     EALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPV
                     ASAIKELKLQTNHITMLLRNPYLLSEEEDGDGDGSIENSDAEAPKGKKKKQKNKQLQK
                     PQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLK
                     EVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHAD
                     LHGATSCVIKNPTGDPIPPRTLTEAGTMALCYSAAWDARVITSAWWVHHHQVSKTAPT
                     GEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMETLT
                     SCTSELMSEEMEQLEGGDSSEEETEELRGTTEEVELRTQADPEDIAAHSGREELSSED
                     GEAIKTATKDEEPIGEVREEEEEPFEYPDTTIDLSHLQSQRPLQKLTPREESFNSSDS
                     KSQSRRHLSAKERREMKKKKLPCDSGDLEVIEEKDKEKESAVHSEADQNTSKNVAAGQ
                     PMKRGQKSKMKKMKEKYKDQDDEDRELIMKLLASAGSNKEEKGKKGKKGKTKDEPVKK
                     NPQKPRGGQRVLDVVKETPSLQASTPDLQDFAVDEPHDDKEEHDLDQQGNEENLFDSL
                     TGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATA
                     REKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK"
     exon            100..168
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            169..271
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            272..397
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            398..546
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            547..614
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            615..701
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            702..775
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            776..846
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            847..922
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            923..985
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1063
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1272
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1458
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..1522
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1523..1611
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1715
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1716..1778
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1779..1891
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1892..1949
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            1950..2008
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2129
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2130..2382
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2383..2425
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2426..2475
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2476..2629
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2630..2707
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2708..2902
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2903..2935
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            2936..3036
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            3037..3080
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            3081..3160
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
     exon            3161..4772
                     /gene="Nemf"
                     /gene_synonym="Sdccag1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcctaggag aggactgcgg tagcgacgcg caccctagcc atgaagaccc gcttcagcac
       61 tgttgacctc cgcgcggtgc tcgcggaact gaatgcgaac ttgctaggaa tgagagtaaa
      121 caacgtttat gatgtggata acaagacgta tcttattcgg cttcaaaaac ctgattttaa
      181 agctacactg ttacttgaat ctggtatacg aattcacaca acagaatttg agtggcctaa
      241 gaacatgatg ccgtctagtt ttgctatgaa gtgtcgaaag catttgaaaa gtcggagatt
      301 agtcagtgca aaacagcttg gtgtggatag aattgtggat ttccaatttg gaagtgatga
      361 agctgcttat cacttaatca ttgagctcta tgacaggggc aacattgtcc ttacagatta
      421 tgagtaccta attttaaata tcctaaggtt tcgaactgat gaagctgatg atgttaagtt
      481 tgctgttcgt gaacgttatc ccatagatca tgccagagct gctgaacctt tgctcacttt
      541 ggaaagattg actgaagtaa tagctagagc tcctagaggt gaactgctga agagagttct
      601 gaatccgtta cttccctatg ggccagctct tattgagcat tgtcttatag aaaatggatt
      661 ctctggcaat gtcaaagtgg acgaaaaact tgaaagcaaa gatattgaga agatactggt
      721 ttgtgtgcag agggcagaag actatttgga aaaaacagcc aacttcaatg gaaagggata
      781 tataattcag aaaagagagg taaaaccaag cctggatgcc aataaaccag ctgaagacat
      841 actcacgtat gaggaatttc atcctttctt gttttctcaa catttacaat gtccatatat
      901 agaattcgaa tcatttgaca aggctgtgga tgaattttat tccaagatag aaggtcagaa
      961 aattgactta aaagcattgc aacaggaaaa acaagcactg aagaaattag ataatgtccg
     1021 aaaggatcat gaaaacagat tggaagctct tcagcaggct caggaaattg acaaactgaa
     1081 aggggagctc atagagatga acctgcagat agttgacaga gccattcagg tagttcgaag
     1141 tgcattagcc aaccagatag attggacaga aattggagtg attgtgaaag aagcacaagc
     1201 ccagggagac cctgttgcaa gtgcaatcaa agaactaaaa ctgcaaacaa accacattac
     1261 catgcttcta cgaaatccat acttgttatc agaggaggaa gatggtgatg gtgatggcag
     1321 cattgagaac agtgatgctg aagcaccaaa agggaaaaaa aaaaagcaaa agaacaagca
     1381 gctgcagaag cctcagaaga acaagccgct gcttgtcgat gtggacctca gcctgtcagc
     1441 ctatgccaat gccaaaaagt attatgatca taagaggtat gctgctaaaa aaacacagag
     1501 aactgtcgaa gctgctgaga aggcattcaa atcagcagag aagaaaacaa agcaaacctt
     1561 aaaagaagta caaacagtta cttctatcca aaaagcaagg aaagtgtatt ggtttgagaa
     1621 atttctgtgg tttattagtt cagagaacta tctcattata ggtggtcgag atcagcaaca
     1681 gaatgagatt attgtgaaaa gatacttaac accaggagac atttatgtgc atgctgatct
     1741 tcatggagct accagctgtg taattaagaa tccaacagga gatcccatcc ctcctcggac
     1801 tttgactgaa gcaggcacaa tggcactttg ctacagcgca gcttgggatg cccgtgttat
     1861 cacgagtgct tggtgggtgc accatcatca ggtctctaaa acagcaccga caggagagta
     1921 cttaacaact ggaagcttca tgataagagg aaaaaagaat ttccttcctc cttcatacct
     1981 aatgatgggg tttagcttcc tttttaaggt agatgagtcc tgtgtctgga gacatcgagg
     2041 tgaacgaaaa gtcagagtgc aggatgaaga catggaaaca ttgacaagtt gcacaagtga
     2101 actcatgtca gaagaaatgg aacagctaga agggggcgac agcagtgaag aagagaccga
     2161 ggagttacgt ggaaccacgg aagaagtgga actcaggact caggctgatc cagaggacat
     2221 tgctgctcac agtggaagag aggaactgag ctctgaagat ggagaagcca tcaaaacagc
     2281 cacgaaagat gaagagccca ttggtgaggt gagggaagag gaggaagagc ccttcgaata
     2341 tcctgacacc accattgact tgtcccatct tcagtcccaa aggcccctac agaaactgac
     2401 tccaagagaa gaatctttta attcaagtga cagtaaatca cagagccgaa gacatttgtc
     2461 agccaaggag agaagagaaa tgaaaaagaa aaagctccca tgtgactcag gggatttaga
     2521 agtgatagaa gaaaaggaca aagaaaaaga aagtgctgtg cacagtgaag ctgaccagaa
     2581 cacaagcaaa aatgtggcag ctggacagcc aatgaaaaga ggccagaaga gtaaaatgaa
     2641 aaaaatgaag gaaaaataca aagaccagga tgatgaagat cgtgaactta ttatgaaatt
     2701 gttggcatct gcaggttcaa acaaagaaga aaaggggaag aaaggaaaga aaggaaaaac
     2761 aaaagatgaa cccgtgaaaa aaaacccaca gaaacccaga ggtggacagc gggttttaga
     2821 tgttgttaaa gaaaccccgt cccttcaggc gtcgactcct gacttacaag actttgctgt
     2881 ggatgagcca catgatgaca aggaagaaca tgatctggat cagcagggaa atgaggaaaa
     2941 tctatttgac tctttgacag ggcaaccaca tcctgaagat gtattaatgt ttgctattcc
     3001 aatatgtgct ccttacacca tcatgacaaa ctataaatac aaagtgaaac ttactcctgg
     3061 agttcagaaa aagggaaaag ctgcaaagac agccttgaac agtttcatgc actccaaaga
     3121 agcaacagca agagaaaaag acttattccg aagtgtgaag gacacagatt tatcaagaaa
     3181 cattcccggg aaagtgaaag tgtctgcccc caatcttctg cacgtaaaaa gaaaatagct
     3241 gtgcactggg cagccagctc tgtagccaga gatgcagaca acatgttact aggacttcca
     3301 ctttacagac gaacatactg ccttgctcta tcaccaaaag gacttatggt ttttccccaa
     3361 gtttttatat atatatatat atatatatat atatatatat atatatatac actactacaa
     3421 taatatttcg taaaatattt gtgaaaactt aatgatacac acctgtaatt gttctacatt
     3481 ttattgaaat tcttgaggtc tcattcatga tgaaaagacc ctgaaatggc tcaagtgcat
     3541 aaactactga cgtagtggtc tactgtatat aacatctcat acatagtaca gccagtcagg
     3601 agaggtttct gtttggttag tagagcaatt aaacatttaa ggtttgtgtc ttgaacactt
     3661 tgccaagttt tacatcaaat gcaaaaaaaa aaaaaaaaaa aaaaaaccac aagaaaatga
     3721 cagttgtttc cgtgcattta tatatatata tatcagcttt cttcctaatt tcttccttgt
     3781 aatatatcac ttgtttgcta ttttctttcc aatcccctac tcccagcagc tatcaaatag
     3841 ttaaaactgt cttatggtgg ttttggtctt tccaagtcag ggtttcctgt gtagccatgg
     3901 ttgtcctgaa ctcactctgt aaagcggact gaccttcacc tcaagagatg gcctgcccct
     3961 gcctcctgag tgctggagta aaggcgtgca tctcccacca ggctcaagcg tcttgacctg
     4021 taatatcaga agtgcatttt ttctgggtgg tggttgcagc attggggaag cagaagcagg
     4081 tagctctctg agttagagct caggacagcc aaggccatag agagaaactc cgtcttggga
     4141 agaaaaatca aaagtgcatt tttttttttt aggctcatca ctaaagattc ctggactagt
     4201 attcttccgg ctcctattag aatagagaat gaagccatgc agtatcattc ccttcaggag
     4261 gtataaacta ccatgtttta attagctggg tagtaactat ggccaccaca tgtcccagga
     4321 ctgcaccaac acactaaggt tgaagtacta agttgtagct tgggctgttt aagtctcacc
     4381 cactgcagac atacccagtg tgatagcatt ttcagttcta gtacttgagg ggtggaagct
     4441 agaggatgac tgattcaaga cccagccttg gctacataag ggtaaaggct gaaaatgtag
     4501 catctttaca tttctacaga cacatccaaa ttatcaaaag ataaatgtaa aaaaaatgtt
     4561 ataaccattc ttggtataaa agtcaatgca ggggctggag agatggctca gcactggctg
     4621 ttcttccaca ggacccaggt tcagttacca gcacccacac tgcagcttac aactgtctgt
     4681 aactccagtt ccagggagtc caacaccctt acgcatgcag gaaaaacacc attcagtata
     4741 cataaaaaat aaatcattaa aaaaaatgcc aa
//
