LOCUS       XM_039093745            3312 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NIMA-related kinase 10 (Nek10), mRNA.
ACCESSION   XM_039093745
VERSION     XM_039093745.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                JACYVU010000260.1  5782200-5782241     c
            43-74               JACYVU010000260.1  5782167-5782198     c
            75-141              JACYVU010000260.1  5781862-5781928     c
            142-272             JACYVU010000260.1  5776982-5777112     c
            273-294             JACYVU010000260.1  5775455-5775476     c
            295-371             JACYVU010000260.1  5775377-5775453     c
            372-456             JACYVU010000260.1  5765441-5765525     c
            457-498             JACYVU010000260.1  5760707-5760748     c
            499-577             JACYVU010000260.1  5758370-5758448     c
            578-645             JACYVU010000260.1  5757033-5757100     c
            646-725             JACYVU010000260.1  5755006-5755085     c
            726-812             JACYVU010000260.1  5753439-5753525     c
            813-1037            JACYVU010000260.1  5750830-5751054     c
            1038-1177           JACYVU010000260.1  5748031-5748170     c
            1178-1239           JACYVU010000260.1  5745487-5745548     c
            1240-1317           JACYVU010000260.1  5742860-5742937     c
            1318-1382           JACYVU010000260.1  5741589-5741653     c
            1383-1485           JACYVU010000260.1  5740486-5740588     c
            1486-1614           JACYVU010000260.1  5740273-5740401     c
            1615-1752           JACYVU010000260.1  5739633-5739770     c
            1753-1798           JACYVU010000260.1  5737591-5737636     c
            1799-1920           JACYVU010000260.1  5735311-5735432     c
            1921-2023           JACYVU010000260.1  5735090-5735192     c
            2024-2099           JACYVU010000260.1  5709076-5709151     c
            2100-2229           JACYVU010000260.1  5665844-5665973     c
            2230-2300           JACYVU010000260.1  5665200-5665270     c
            2301-2514           JACYVU010000260.1  5662247-5662460     c
            2515-2698           JACYVU010000260.1  5650960-5651143     c
            2699-2785           JACYVU010000260.1  5650779-5650865     c
            2786-2840           JACYVU010000260.1  5648947-5649001     c
            2841-2878           JACYVU010000260.1  5641068-5641105     c
            2879-2979           JACYVU010000260.1  5628619-5628719     c
            2980-3090           JACYVU010000260.1  5621750-5621860     c
            3091-3199           JACYVU010000260.1  5607146-5607254     c
            3200-3252           JACYVU010000260.1  5605265-5605317     c
            3253-3312           JACYVU010000260.1  5605127-5605186     c
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3312
                     /gene="Nek10"
                     /note="NIMA-related kinase 10; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 2
                     bases in 2 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 2 Proteins, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:305710"
                     /db_xref="RGD:1564342"
     CDS             1..3312
                     /gene="Nek10"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: serine/threonine-protein
                     kinase Nek10"
                     /protein_id="XP_038949673.1"
                     /db_xref="GeneID:305710"
                     /db_xref="RGD:1564342"
                     /translation="MPDQDTKVKSIEKSTDKKQQGTTTRGLSDLKRLRCLLNVQSSKQ
                     HGSLPAINFDSAQSNMSKSDPTIKTGGHRARGQWHESTEAVELENFSINYKNERNFSK
                     HPQHQLFQEIFTALVRNRLICREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHKLGG
                     IEDLAQYMEIVANEYLGYAEEQHCVDKLVNMTYIFQKLAAVKDQREWVTSSGAHKTLV
                     NLLGARDTNVLLGTLLALASLAESPECREKISELNVVENLLMILHEYDLLSKRLTAEL
                     LRLLCAEPPVKEQVKLYEGIPILLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIW
                     GGIKQLLHILQGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPGEIQENTVSLQA
                     ACCAALTELALNDTNAHQVVQENGVYTIAKLILPNKQSNAAKTNLLQCYAFRTLRFLF
                     SMERNRPLFKRLFPTDLFETFIDIGHYVRDIGAYADLVSQLNLLLEDELKQIAENIES
                     INQKKAPLKYIGDYALLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFGKDKKD
                     RDSSVKNIVSELTIIKEQLYHPNVVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKE
                     KQQHFSEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQ
                     KQESSKLTSVVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLNPPFCSTNMLSL
                     ATKIVEAVYEPVPEGIYSEKVTETIRRCLTPDAEARPDIVEVSSMISDIMMKYLDSLS
                     TSQLALERKLERERRRTQRYFMEANRNAVMCHHELSLLSQETFEKASLSSSSSGAASL
                     KSELSESAELPGEGCHIPCGKEEDRGCEEELSEDNFQLESVEKDLYSELDEELDVSDN
                     CSSSSSSPLKESTFSILKRSFSASGRERHSQARDFIGGLGSRPRPASAGIAVSQRKVR
                     QICDPIQQILIQLHKVIYITQLPPALHHDLKRRVIERFKKSLFSQQSNPCNLKSEIRK
                     LSQGSPEPIEPNFLTSDYHLLRHSSTAKNWSPSDPTGPSSGLEVEEGITYEQMQTVIE
                     EVLEESGYYNFTTNR"
ORIGIN      
        1 atgcctgatc aagacacaaa ggtgaaaagc atagagaaaa gcactgataa gaagcaacag
       61 gggaccacca ccaggggact atcagatctt aaaagactcc ggtgcctgtt gaacgtccag
      121 tcaagcaaac agcacggtag tcttccagcc attaactttg acagtgccca aagtaacatg
      181 tcaaagtctg atcccaccat caagacaggg ggacatagag ctcgtggtca atggcatgag
      241 tccacagaag cagttgaact tgaaaatttt agtataaact acaagaatga gagaaatttc
      301 agcaagcatc cacaacatca gttatttcag gagatcttta cggctctggt gagaaacaga
      361 ctcatatgca gagagtgggt taatcgtgcc ccatccattc attttctgag agtattaatt
      421 tgtctgaggc tgctgatgcg ggatccatgt tatcaggaaa tactccataa attgggtggc
      481 attgaagacc tcgctcagta catggagatc gtggccaacg agtacctggg ctatgccgag
      541 gagcagcact gtgtggacaa gctggtcaac atgacgtata ttttccaaaa acttgctgct
      601 gtgaaagacc aaagagaatg ggtcacttca agtggagccc acaagacatt agtgaattta
      661 cttggtgccc gagacaccaa tgtcctgttg ggtactcttc tggcactggc tagcttagca
      721 gagagtccag agtgtaggga gaagatcagt gaactcaacg tagtagaaaa tctgttgatg
      781 attctgcacg aatatgactt actctctaaa agactcactg ccgagctcct gcgcctgctt
      841 tgtgctgagc ccccggtgaa ggagcaggta aaactctatg aggggatccc catcctgctc
      901 agcctgctcc attctgacca cctgaagctg ctatggagtg tcgtctggat tctggtccag
      961 gtgtgtgagg acccggagac cagtgtggaa atccggatct ggggtgggat caagcagctc
     1021 cttcatattt tacagggaga ccgaaatttt gtttctgacc ggtcctccat tggaagcctg
     1081 tccagtgcga atgctgccgg acgcatccag cagcttcatt tgtcagaaga tttaagccct
     1141 ggggaaatcc aggaaaatac tgtctctctc caagcagcct gctgtgctgc cctcaccgag
     1201 ttggccctca atgacaccaa tgcccaccaa gtggttcagg aaaatggtgt atatacaata
     1261 gcaaaattaa ttttaccaaa taaacaatcg aatgcagcaa aaactaatct gctacagtgt
     1321 tatgctttca gaaccctgag gtttctcttc agtatggaaa ggaataggcc actgtttaaa
     1381 agacttttcc ccaccgacct gtttgagacc ttcattgaca taggacatta cgttcgggat
     1441 atcggtgctt atgcggactt ggtatcacag ttgaatttac tactggaaga cgagctgaag
     1501 cagattgccg agaatattga aagcatcaac cagaagaaag cacccttgaa gtacataggt
     1561 gactacgctc tgttggacca cctcggaagt ggagcgtttg gctgtgttta taaggttaga
     1621 aagcgtagtg gtcaaaatct tttagcaatg aaggaggtca atttgcataa cccagcattt
     1681 ggaaaggata agaaagaccg agacagcagt gtgaagaaca ttgtttctga attaacaata
     1741 attaaggagc agctttatca tcccaacgtt gtacgttatt ataagacatt tttggaaaat
     1801 gacaggttgt atattgttat ggaactgata gaaggagccc cactcggaga gcacttcagt
     1861 tctttgaagg aaaaacagca gcatttcagt gaagaacgac tgtggaaaat atttatacag
     1921 ttgtgcttag ctcttcggta cctacacaag gagaagagga ttgttcacag agatctcacg
     1981 ccaaacaaca ttatgttggg agataaggac aaagtgacag ttactgactt tggcctggca
     2041 aagcaaaagc aggaaagcag taagctcacg tctgtggtgg gaaccatcct ctattcttgc
     2101 ccagaggtcc tgaagagcga gccgtatgga gagaaggctg atgtctgggc tgcaggctgc
     2161 atcctttatc agatggcgac tttgaatcct cccttctgta gcaccaacat gctctccttg
     2221 gctactaaaa tagtagaggc tgtgtatgag ccagtgccag aaggtatcta ctctgaaaaa
     2281 gtgacagaga ccattagaag atgcctcact cctgatgcag aagctcgtcc agatattgta
     2341 gaagttagtt ccatgatatc agatatcatg atgaagtatt tagacagctt gtccacatcc
     2401 cagctagcct tggagaggaa actggaacgg gagcgaaggc gcacacagag atatttcatg
     2461 gaagccaaca ggaatgctgt catgtgtcac catgagctat ctctgctgtc ccaggagacc
     2521 tttgagaagg caagcctgag cagcagcagc agcggggcag ccagcctgaa aagtgagctt
     2581 tcagagagtg cagaactacc tggggagggc tgccacatcc cctgtgggaa ggaggaggac
     2641 aggggctgcg aggaggaact gtcagaggac aacttccagc tggagagtgt ggagaaagac
     2701 ctgtattctg aactcgatga ggagctggac gtctcggaca actgtagcag ctccagttca
     2761 agccccctaa aggagtctac attcagcatt ttaaagagaa gtttcagtgc ttcgggaaga
     2821 gaaagacatt cacaagcaag ggacttcatt ggtggactag gatcaagacc aagaccagct
     2881 tctgcgggca tcgctgtatc ccagcggaaa gtgaggcaga tctgcgaccc catccagcag
     2941 atcctgatcc agctgcacaa agtcatctac atcacgcagc tccctccagc tctccaccat
     3001 gatctgaaga gaagggttat agaaagattc aagaagtccc tgttcagcca gcagagcaac
     3061 ccctgtaacc tgaaatccga aatcaggaag ttatcacagg ggtctccaga acctatcgaa
     3121 ccgaactttc ttacctcaga ttaccactta cttcgccatt caagcactgc aaaaaactgg
     3181 tccccaagtg accccacagg tccatccagc ggccttgaag tggaagaggg aatcacatat
     3241 gagcagatgc agactgtgat tgaagaagtc ctggaggaaa gtggctatta caactttaca
     3301 actaacaggt ga
//
