LOCUS       XM_039081873            1783 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nei-like DNA glycosylase 1 (Neil1),
            transcript variant X1, mRNA.
ACCESSION   XM_039081873
VERSION     XM_039081873.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081873.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1783
                     /gene="Neil1"
                     /note="nei-like DNA glycosylase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 7 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 113 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:367090"
                     /db_xref="RGD:1306077"
     CDS             163..1326
                     /gene="Neil1"
                     /codon_start=1
                     /product="endonuclease 8-like 1 isoform X1"
                     /protein_id="XP_038937801.1"
                     /db_xref="GeneID:367090"
                     /db_xref="RGD:1306077"
                     /translation="MPEGPELHLASHFVNEICKGLVFGGCVEKSSVSRNPEVPFESSA
                     YHISALARGKELRLTLSPLPGSHPPQKPLSLVFRFGMSGSFQLVPAEALPRHAHLRFY
                     TAPPAPRLALCFVDIRRFGHWDPGGEWQPGRGPCVLLEYERFRENVLRNLSDKAFDRP
                     ICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARTVLEALQQCRLSPELTLSQKVKA
                     KLQNPDLLELCHLVPKEVVQLGGKGYGPERGEEDFAAFRAWLRCYAVPGMSSLRDRHG
                     RTIWFQGDPGPLAPKGGRSRKKKSQETQLEAEDRKEDPPSKSISRTQRARKHCPKNVP
                     QQSEGASLPQNLETPAVPEKGKRRGRRASTGRHRGPKSKPDTQPREAGEISAS"
ORIGIN      
        1 gggttctttc ggtcacggta gggttcttcc tccgggtcac gcgacgtctc caaagcttgc
       61 ccaacacccg ggattttcac aactaaggaa ctccattcca tactacgccg cctgcctgag
      121 gaactacact tcccagcagg gcccagccat tcctccttca gaatgccgga gggcccagag
      181 ctgcacctgg ccagccactt tgtgaatgag atatgtaaag ggctggtatt cggtgggtgt
      241 gtggagaagt cctctgtcag ccgaaacccg gaggtgccct ttgagagcag tgcctaccac
      301 atctcagctt tagcccgagg caaggagctg cgcttgacat tgagccccct gcctgggtcc
      361 catccccctc agaaaccact gtcccttgtc ttccgctttg gtatgtctgg atccttccag
      421 ctggtacccg cagaagcact gccgcgccac gcccatctac gtttctatac ggccccacct
      481 gccccccggc ttgccctttg cttcgtagac atccgccgct ttggccactg ggaccctgga
      541 ggtgaatggc agccaggccg cggaccctgt gtcttgttgg agtatgaacg gttcagagag
      601 aacgtgcttc ggaacctatc ggacaaagcc tttgaccggc ccatctgcga ggccttgttg
      661 gaccagaggt tcttcaatgg aatcggcaac tatctgcggg cagagatctt gtatcggctg
      721 aagatccccc cttttgagaa ggcccgtaca gttctagagg ccctgcaaca gtgccggctg
      781 agcccagagc tgaccctgag ccagaaggtc aaggccaaac tgcagaaccc agacctgctg
      841 gaactgtgtc acttggtgcc caaggaagtg gttcagctgg ggggcaaagg ctatgggcca
      901 gagcgtggag aggaagattt tgctgccttt cgagcctggc ttcggtgcta tgctgtgcca
      961 ggcatgagct ccctgagaga ccggcatggc cgtaccattt ggttccaggg tgatcctgga
     1021 cccttggcac ccaaaggggg cagatcccga aaaaagaagt cacaggaaac acagctggag
     1081 gctgaggaca gaaaagagga ccctccaagc aagtccattt ccaggactca gagggccagg
     1141 aagcactgtc ctaagaatgt acctcaacag tctgaagggg ccagcctccc acaaaacctg
     1201 gaaacccctg cagtccctga gaaaggaaag agaaggggga gacgggcgag cacaggccgc
     1261 cacagaggac caaagagtaa gcctgatact caacccaggg aggctgggga gatttcagcc
     1321 tcataggtag aggtatcctt ccctgatgac ttgctatcaa tctaggggaa tgtctgaatc
     1381 cctagaacca gtatttgtag ggctacatgc cctgggccct gtgatttttt tcctgcacaa
     1441 ctgttgtctg aggtggggtc tcctgtgtcc tatccttgaa tccatatgta cctgaagatg
     1501 acattgaact cctcctgttt gatcttcctg cttcgtttcc atggtcactg ggatttgcag
     1561 gtgtgagctg agccaccaca ccctgctgat ttgctaccgt ttattttctc aagacaaggg
     1621 tttctctgtg tagccctggc tgtcctagaa ctcatgctgt agaccaagct ggcctcaagc
     1681 tctgagatct gcctgcttct gcctcccaaa gtgttggaaa tgtatgctat cccaagtgaa
     1741 aaccattatc aaattaataa atttgaactt ctcagtgctt ctt
//
