LOCUS       NM_001106779            3700 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus NEDD1 gamma-tubulin ring complex targeting factor
            (Nedd1), mRNA.
ACCESSION   NM_001106779 XM_001080224 XM_216878
VERSION     NM_001106779.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3700)
  AUTHORS   Fang,C.T., Kuo,H.H., Pan,T.S., Yu,F.C. and Yih,L.H.
  TITLE     HSP70 regulates the function of mitotic centrosomes
  JOURNAL   Cell Mol Life Sci 73 (20), 3949-3960 (2016)
   PUBMED   27137183
REFERENCE   2  (bases 1 to 3700)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   3  (bases 1 to 3700)
  AUTHORS   Manning,J.A., Colussi,P.A., Koblar,S.A. and Kumar,S.
  TITLE     Nedd1 expression as a marker of dynamic centrosomal localization
            during mouse embryonic development
  JOURNAL   Histochem Cell Biol 129 (6), 751-764 (2008)
   PUBMED   18239929
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 29, 2021 this sequence version replaced NM_001106779.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.766033.1,
                                           SRR26360190.1635511.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                JAXUCZ010000007.1  29161598-29161634   c
            38-181              JAXUCZ010000007.1  29159053-29159196   c
            182-276             JAXUCZ010000007.1  29155713-29155807   c
            277-393             JAXUCZ010000007.1  29152003-29152119   c
            394-534             JAXUCZ010000007.1  29149054-29149194   c
            535-764             JAXUCZ010000007.1  29137936-29138165   c
            765-966             JAXUCZ010000007.1  29136273-29136474   c
            967-1162            JAXUCZ010000007.1  29135702-29135897   c
            1163-1291           JAXUCZ010000007.1  29130644-29130772   c
            1292-1339           JAXUCZ010000007.1  29128244-29128291   c
            1340-1539           JAXUCZ010000007.1  29127204-29127403   c
            1540-1696           JAXUCZ010000007.1  29125754-29125910   c
            1697-1853           JAXUCZ010000007.1  29124829-29124985   c
            1854-1920           JAXUCZ010000007.1  29122376-29122442   c
            1921-3700           JAXUCZ010000007.1  29120200-29121979   c
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..3700
                     /gene="Nedd1"
                     /note="NEDD1 gamma-tubulin ring complex targeting factor"
                     /db_xref="GeneID:299730"
                     /db_xref="RGD:1307750"
     exon            1..37
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            38..181
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..2025
                     /gene="Nedd1"
                     /note="neural precursor cell expressed, developmentally
                     down-regulated gene 1; neural precursor cell expressed,
                     developmentally down-regulated 1"
                     /codon_start=1
                     /product="protein NEDD1"
                     /protein_id="NP_001100249.2"
                     /db_xref="GeneID:299730"
                     /db_xref="RGD:1307750"
                     /translation="MQENLRFASSGDDVKIWDASFLTLVDKFNPHTSPHGISSICWSS
                     NNNFLVTASSGGDKIVVSSCKCKPVPLLELAEGQKQTCVDLNSTSMYLASGGLNNTVN
                     IWDLKSKRLHRSLKDHKREVTCVAYNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHG
                     SKQPVRHIKYSLFRKSLLGSVSDNGVVTLWDVNSQSAYHSFDSTHKAPASGLCFSPVN
                     ELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAVDFMPDGASLAIGSSRGKIYQYD
                     LRMLKSPVKTISAHKTSVQCIAFQYSTSLTKASLNKGCSNKATAANKRSVPVGSSSGA
                     AQNSGIVREAPSPSIATVLPQPVTTAVGKGAGAAQDEAGLPRSKNTDILSKETDAGKS
                     QDFSSFDDTGKSSLGDMFSPIRDDAVVNKGGDESVGKGDGLDFLPQLNSVFPLRKNAG
                     SSSTLVLHSSPFNVLMGTGKEEHESHELSAESKKAHLGKPEPKDSLKQFTKLISSGAE
                     PGILNTCPSSNQARNLEKFEKPEKDIEVQLMHEPSVNGPSTPVPKAASSVTAGVASSL
                     SEKIVDTLGNSRPAAPLTSVQIRFIQNMIQETLDDFREACHRDIVNLQVEMIKQFHMQ
                     LNEMHSLLERYSVNEGLVAEIERLREENKRLRAHF"
     exon            182..276
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            277..393
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            394..534
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            535..764
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            765..966
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1162
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1291
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1339
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1539
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1696
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1853
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1854..1920
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1921..3700
                     /gene="Nedd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggagccgg gcccccctgt ggtcccacgc ttgagaggct cagccatgca ggaaaacctc
       61 agatttgcct catcaggaga tgatgttaaa atatgggatg cttcgtttct gacattggtg
      121 gataaattca acccccacac gtcaccgcat ggaatcagtt caatctgttg gagcagcaat
      181 aataacttcc tagtgactgc gtcttctggt ggtgacaaaa tagtggtgtc aagttgcaaa
      241 tgtaagcccg ttccactttt ggagcttgcg gaagggcaaa agcagacatg tgtcgattta
      301 aattctacat caatgtattt ggcaagtgga ggcctaaata acactgttaa tatttgggat
      361 ttaaagtcaa aacgacttca tcggtctctt aaggaccata aacgggaagt aacttgtgtg
      421 gcgtacaatt ggaatgattg ttacattgct tccgggtctc tcagtggtga gattatctta
      481 cacagcgtaa ccactaatac ctccagtacg cctttcggcc atgggagtaa gcagcctgtc
      541 cggcacatca agtactcgtt gtttaggaag tctctcttgg gcagcgtttc ggataatgga
      601 gtagtgaccc tctgggatgt gaacagtcag agtgcatacc acagctttga cagtacacac
      661 aaagccccag cttcaggcct ctgcttctct cctgtcaacg aactgctgtt tgtgaccata
      721 ggcctggata aaagaatcat cctgtatgac acttcaagta agaagctggt gaaaacttta
      781 gtggctgaca ctcctctgac tgctgtagat tttatgccag atggagccag tttggctatt
      841 ggatcctccc gtgggaaaat atatcagtat gacttaagga tgctgaaatc tcccgtgaaa
      901 accatcagcg cccacaagac atctgtgcag tgtatagcat ttcagtactc cacatctctg
      961 acgaaggcaa gtttaaataa aggctgctca aataaggcca cagcagcgaa caaacggagt
     1021 gttcctgtgg gcagcagcag tggggctgcc cagaattctg gaattgtcag agaagcaccc
     1081 agcccttcca ttgccacagt tctcccacag cccgtgacga cagctgtggg caaaggagca
     1141 ggggctgctc aggacgaagc aggtttgcct cgaagcaaaa atacagatat cttatctaag
     1201 gaaactgatg ctggaaaaag tcaagacttc tccagctttg atgacacggg gaagagtagt
     1261 ttaggggaca tgttttcacc aattagagat gatgctgtag tcaacaaagg aggtgacgag
     1321 tctgtaggca aaggagatgg ccttgacttt ctaccacagc taaactcggt gttccccctg
     1381 aggaagaatg caggctcctc cagcactctg gtgctgcact ccagcccttt taatgtcctt
     1441 atggggacag ggaaggaaga gcatgagagt cacgagctgt cagccgagtc taagaaggca
     1501 caccttggga agccggagcc taaggactcc ttgaagcagt ttacaaagtt gatctcctct
     1561 ggtgctgaac ctggaattct aaacacctgt ccatcatcta accaagcaag aaatcttgaa
     1621 aagtttgaaa agccagaaaa agatattgaa gtccagttga tgcacgaacc ctcagtcaat
     1681 ggaccctcaa ccccagtacc aaaggcagcc tcctccgtca ctgctggagt agccagttca
     1741 ctctcagaaa aaatagtcga cacccttggg aacagtcggc cggccgcgcc acttacctct
     1801 gtccagatcc gcttcattca gaacatgata caagaaaccc tggatgactt cagggaagct
     1861 tgccataggg acattgtgaa tctgcaagtg gaaatgatta aacagtttca tatgcaactg
     1921 aatgaaatgc actctttgct ggaaagatac tcagtgaatg aaggcttagt ggctgagatc
     1981 gaaaggctgc gagaagaaaa caaaaggctg cgggcccact tctgaagcct ctggacacct
     2041 tgatttgtta tgagttaggt ttctggcaac tgaaatacac agaaccagta ttgttcgcat
     2101 ggccttgaaa acggattctg cagcgcgcac tattccatct ctgtcagaca tattatattt
     2161 ttatattaaa actgcacgga ataccatctt cctagtgggg aagtcaacag gatctttatt
     2221 ttctgatcgc cttagctata cactaagtgc ccttttccta aaagaaaaaa aaatgttcat
     2281 ataagaatgg gtttatgttt tgtaaatgac tttttaaaac agatatattt ttgatggaca
     2341 aattgtattc caaatttttt taggtagcca atgtttaaaa ccctggtata ccttctattt
     2401 tataaagaaa taattttaaa gtggcaattg gattttttca cagtttcgta attattttgt
     2461 taacatgacg acatcaggta tgacttattt atttagtata tatgtaatac attttgtgtt
     2521 gtacagatac atggtaactt tgttctggtt acctaacttt atataggaaa aacttttaag
     2581 agtttggaag attcaagggc tatgtatatc tgctgattgt ctaatgaatt aacgaaatgc
     2641 aaaatcatac tctcagattt tcattaccat gactcaactt aggatcagtg aaattttctt
     2701 ataagatact aaatattaca tattgttgcc atttttttcc tcacaactga aagggataga
     2761 ttatttcttc tgtgttgttt accattaact ttttctaatt acaatgtgct gtgaacagca
     2821 ctttctctct ttagccttac cataatatta tttataaaga ttcatcatgc aaagaattta
     2881 cacgttggca gcactgacca tgttcctctg cctgctgtga cccacacttt gatggtgttg
     2941 gatgcctctt gcccaaagat ttcatctgtg tactttatac agagatctgc tacccacttt
     3001 tgctttccag gatcaagatg tttactaaaa tgtagcttag attactaact gggtttctaa
     3061 agaggtggaa gctgttaggg tgtatttaat aaatataaac ttatgaataa ttatctccaa
     3121 aagtggatca ggagcaggac ttttcccaag cttctcagaa agtctatttg tgtatcaagt
     3181 gtccgtggcc tttacttagc agatatggtg acactatgac ttgtaacaag tccccttata
     3241 tgtcactcaa acaatgttag aatgcagaag tcctttgtct atatactaca ttttaatcta
     3301 ttaatatttt cctacttctt ttttctatag gtgtatatat tgtgtattaa gggggatctg
     3361 atagaacatg tgtataggtg aacacttgtc atggatttaa gcactgagga caataaattt
     3421 tgtattcaaa atgtagacgg tctgagcatg aacctttcac ccctagctga aatggagtaa
     3481 tactgagggg acttgacctt ccctctagga atttgaaaac aatagacaag attgttatta
     3541 atgcatagca acaaaacagt actctctcct ccccttctgc tccctcccct tcccttccct
     3601 ttcccctccc tttccctccc ctctcctccc cttctctctc tgtcatcccc atctgctctt
     3661 cctcttatat gattaaataa atccttaaaa tttgtgcaaa
//
