LOCUS       NM_001109076            3794 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus nectin cell adhesion molecule 4 (Nectin4), mRNA.
ACCESSION   NM_001109076 XM_001053906 XM_573506
VERSION     NM_001109076.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3794)
  AUTHORS   Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3794)
  AUTHORS   Harrison OJ, Vendome J, Brasch J, Jin X, Hong S, Katsamba PS,
            Ahlsen G, Troyanovsky RB, Troyanovsky SM, Honig B and Shapiro L.
  TITLE     Nectin ectodomain structures reveal a canonical adhesive interface
  JOURNAL   Nat Struct Mol Biol 19 (9), 906-915 (2012)
   PUBMED   22902367
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473985.1.
            
            [WARNING] On Apr 29, 2024 this sequence was replaced by
            NM_001109076.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_573506.2, XM_001053906.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMN13663593 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..3794
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /note="nectin cell adhesion molecule 4"
                     /db_xref="GeneID:498281"
                     /db_xref="RGD:1559826"
     exon            1..546
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     CDS             471..1997
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /note="poliovirus receptor-related protein 4; nectin-4;
                     poliovirus receptor-related 4"
                     /codon_start=1
                     /product="nectin-4 precursor"
                     /protein_id="NP_001102546.1"
                     /db_xref="GeneID:498281"
                     /db_xref="RGD:1559826"
                     /translation="MPLSLGAEMWGPEAWLLLLFLASFTGRYSAGELETSDLVTVVLG
                     QDAKLPCFYRGDPDEQVGQVAWARVDPNEGTRELALLHSKYGLHVSPAYEDRVEQPPP
                     PRDPLDGSILLRNAVQADEGEYECRVSTFPAGSFQARMRLRVLVPPLPSLNPGPPLEE
                     GQGLTLAASCTAEGSPAPSVTWDTEVKGTQSSRSFKHSRSAAVTSEFHLVPSRSMNGQ
                     PLTCVVSHPGLLQDQRITHTLQVAFLAEASVRGLEDQNLWHVGREGATLKCLSEGQPP
                     PKYNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNELSSRASQVTVEVLDP
                     EDPGKQVDLVSASVVVVGVIAALLFCLLVVVVVLMSRYHRRKAQQMTQKYEEELTLTR
                     ENSIRRLHSHHTDPRSQPEESVGLRAEGHPDSLKDNSSCSVMSEEPEGRSYSTLTTVR
                     EIETQTELLSPGSGRTEEEDDQDEGIKQAMNHFVQENGTLRAKPTGNGIYINGRGHLV
                     "
     exon            547..906
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1197
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1318
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1319..1467
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1621
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1697
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1698..1772
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
     exon            1773..3794
                     /gene="Nectin4"
                     /gene_synonym="Pvrl4; RGD1559826"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagtcaggc ccatgctctc acaggtaaaa cccctgttga ggataagatc ccactgcctg
       61 cacccagatc ctttccttct tccctccctc tctggcgccc attagctagc ccaggccgtg
      121 ggggcggtgg ctgcgaagtc tcctctctgt gccaggcccg gcccccggag acgcacctgt
      181 tctgacctgc ttagcaggtt cccaggtttc tgccttcgtt gttggccacg gcgtgggaag
      241 cagctctggg ggagctcagg gctcccgatt acggcttctc cagggtagcc acggctgggt
      301 gggtagaact ggggtctggg tcccttagtg gagacccaag tgggataggc aggttcgtca
      361 gtgcctgact tcctgccttc tgggtcagag ccttacacag ctccagaacc ggctcccagg
      421 gagaactccg tggaactcca gaatcactgg gcaggtctgc ctttcagcca atgcccctgt
      481 ccctgggagc cgagatgtgg ggccctgaag cctggctgct gctgctgttc ctggcatcat
      541 ttacaggccg atactccgcg ggtgagctgg agacctcgga cttagtgaca gtggtgctgg
      601 gccaggacgc aaaactgccc tgcttctacc gaggggatcc cgatgaacag gtggggcagg
      661 tggcatgggc tcgagtggac ccaaacgaag gcacccggga gctggccctg ctgcactcca
      721 aatacgggct tcatgtgagc cctgcctatg aggaccgcgt ggagcaacca ccacccccac
      781 gagaccctct agacggctcc atcctcctgc gcaatgctgt gcaagcagat gagggcgagt
      841 acgaatgcag agtcagcacc ttcccagccg gcagctttca ggcacggatg cggcttcgtg
      901 ttctggtgcc tcccctgcct tccctgaatc ctggtccacc actagaagaa ggccagggcc
      961 tgacgttggc agcctcttgc actgctgagg gcagcccagc tcccagtgtg acctgggaca
     1021 cagaggtcaa aggcacacag tccagccgct ctttcaagca ctcccgctca gctgccgtca
     1081 cttcagagtt tcatctggtg cccagccgaa gcatgaatgg gcagccactg acctgtgtgg
     1141 tgtctcaccc tggcctgctc caggaccaaa gaatcaccca caccctccaa gtggccttcc
     1201 ttgcggaagc ctctgtgagg ggccttgagg accaaaactt atggcatgtt ggccgagaag
     1261 gagccacact caaatgcctg agtgaaggac agccccctcc caaatacaac tggacacggc
     1321 tggatggacc tctgcctagt ggggtgcgag tgaaagggga cactctgggc ttccccccac
     1381 tgactactga gcacagtggt gtctacgtct gccacgtcag caacgaactt tcttcgaggg
     1441 cttctcaagt cactgtagaa gttcttgacc ctgaggatcc aggaaagcag gtggatctgg
     1501 tgtctgcgtc agtggtcgta gtgggtgtga ttgctgcact cctgttctgt ctcctggtgg
     1561 tggtggtggt gctcatgtcc cgatatcatc gccgcaaagc ccagcagatg acccagaaat
     1621 acgaggagga gctgactttg accagggaga actccatccg gaggctgcac tctcaccaca
     1681 cggaccctag gagccagccg gaggagagtg tagggctgag agcggagggc caccctgata
     1741 gtctcaagga caacagtagc tgctctgtga tgagtgaaga gccagagggc cgcagctact
     1801 ccacgttgac cacagtgaga gagatcgaaa cacagactga actgctctcc ccaggctcgg
     1861 ggcggacaga ggaggaggac gatcaggatg aaggcatcaa acaggccatg aaccattttg
     1921 ttcaggaaaa tgggaccctg agggccaaac ctacaggcaa tggtatctac atcaacgggc
     1981 gagggcactt ggtctgaccc aggcctgcct ccctccctga ggcctggctc ttctgcttcc
     2041 atgggggaac ttcagctctt cttagggcaa acacccttaa atgcctgcat ttctttagga
     2101 aggtacttcc caccctactg actgctccac ttttacctcc aatcctgctg ttcatcagga
     2161 gggctccgct ggttgagtgc ctcccaccat tgagtgtagg tcattccgtg tgtgtgtgtg
     2221 tgtgtgtgaa cattcatgga ctgtatgtgc atgaaggggt gactgtccat cctatgcacc
     2281 atcctgtcat ggtaagagtc caagtgaatg atatatgtgt gccacaggat ctgtggctgt
     2341 gtgccgagag cgttactagg gtgtggtttg tgagtagtgt gccttacgtg tgacccctgc
     2401 ctgcagaggc agggatattc ctcagacccc agagcagtat tagcgaggca gaggttagaa
     2461 gtgagaggtg gagactgtcg ccagatccag gtgtgcgggc ataactggag ctagaatctg
     2521 acctccaacg tgtgggatct gtgttcccac cccttgggaa taagtgtaaa gcagacatcc
     2581 aggggtctgc cagaggccag aactgttaca gaagccctct gccctctggt ggtctgtggg
     2641 cctgctccat ggacatacct tctgtaaact caactccaag ggagcttcct gagttctgct
     2701 cagactccct taataagaga aaaagaaaat ttagaacaaa caaacaaaaa gctttattga
     2761 tttatgtgca tttttttgtt gtttgtttgt ttgttttaaa actgggcttt aaacagcaag
     2821 gccagcccac acaggcattc aagaaaaccg tttagcagac ccccacagca gagattaatg
     2881 cctgtggttc tggaaagttc tcttccaagg atgccttcac ccagagaggt tctggggaag
     2941 gagctgacag ctgaaggagc ctggagcttg gggtgtgaag tacaaacact ggataggagg
     3001 ttagggataa ggtgcttgac tcccatggtt cctcagatct tgtcctagct gtgtctacag
     3061 aggtttgtgc cttcacggag ttgggacttg gtgtcaaggg ctcctggttc agttgtgttg
     3121 agggcagagg gtagtgggaa ggtggaagtt caggtgagga gaaaggggtg tcatgggtga
     3181 gggtgagaac aggtccttcc ccaggggttt ctgagtcagt catttggggc tctctggcac
     3241 tttgtacgtg tgggacctgg ggttagatgt tagggttttg ttttgttttt tttagcccaa
     3301 acgtttgcag ccagaatacg gagatttagt atccaaacct tgtgtggcct gaaatctgct
     3361 ggtctgaagg agaagctctc atttcatccc caagtaaccc aggacttatg gaccccaagg
     3421 atctggggtc ttagtgtgta tatttcatgt aaatatatgt atatttgtac ataaaatgat
     3481 attctgtttt taaataaaca gataaaaccc tttttgtctg atttctgtct tgccccttga
     3541 actgggtaag tcacaagtgc tatgtatgta ctgagtttct ctgtgatccc ttctttgctc
     3601 ccaggcaagg acccagatac ttagagctct gagagccctc aggtagggca gtgtggttat
     3661 aacctccttt aggggaagcc agtgccttag tttgcaaagt gtttctaatt tgactgtact
     3721 ggaaacttcc agcagctgtg tggcgtggac agccgtgtac ccttttacag acaaagaaac
     3781 tgaaactcaa aagt
//
