LOCUS       XM_006239180            1371 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NECAP endocytosis associated 2
            (Necap2), transcript variant X2, mRNA.
ACCESSION   XM_006239180
VERSION     XM_006239180.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239180.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239180.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1371
                     /gene="Necap2"
                     /note="NECAP endocytosis associated 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:298598"
                     /db_xref="RGD:735063"
     CDS             65..718
                     /gene="Necap2"
                     /codon_start=1
                     /product="adaptin ear-binding coat-associated protein 2
                     isoform X2"
                     /protein_id="XP_006239242.1"
                     /db_xref="GeneID:298598"
                     /db_xref="RGD:735063"
                     /translation="MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSG
                     RLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR
                     AFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKI
                     NIALASWPLRENASPIQWTGGTVILSLAWKKLTFTERQLWARSGSRRLIPLGTPFLP"
ORIGIN      
        1 cgtcacttcc ggtcctgaag gggcggggaa gaagccggaa gtcccgagag ctccggcggt
       61 agagatggag gagagcgagt acgagtctgt tctctgtgtc aagccagagg tccatgtcta
      121 ccgcatcccg ccgcgggcca ccaaccgtgg ttacagggcc tcagaatggc aactggacca
      181 gccatcctgg agtggccggc tgcggatcac tgcgaaaggg aaggtggcct acatcaagct
      241 ggaggacagg acctctgggg agctctttgc gcaggcccca gtggaccagt ttcccggcac
      301 cgctgtggag agtgtgacag actccagcag gtacttcgtt atccgaattg aagatggaaa
      361 cgggcgacgt gcttttattg ggattggctt tggggaccga ggggacgcct ttgacttcaa
      421 cgtggcattg caggaccatt tcaagtgggt gaagcagcag tgcgagtttg caaaacaagc
      481 tcagaaccca gatgaaggcc ccaagttgga cctgggcttc aaggagggcc agaccatcaa
      541 gatcaacatc gcattggcca gctggccctt gagagaaaat gcaagtccaa tccagtggac
      601 tggtggcact gtgattcttt ctcttgcttg gaagaaacta acatttactg agcgtcagct
      661 gtgggccagg tcaggaagta gaagactgat ccctttggga acgcctttcc tgccctgact
      721 ccagtgccct ggattgggtc tgtgcctcgt ttctgtgagt tgtgggagac taactcactt
      781 tgacacacga tccccttatt cacatcgtgc cgtaagagtt acccatgttg cttcctgtgg
      841 ttgttcaccc tctgtgatgg cccctgccat tatgcctgtg ctcccggttc atctgtttca
      901 ctgaggatgg atgttggggg tactccctct tgcgtcagct ccagacactg ctgctgtgaa
      961 tggccaagca catgtctttg ttgctcacag gatggggctg cagaatcctg tgctgcgctg
     1021 cactgcggat gtccttggat gctttggcag agccctctga gagcttccct tgcctcacat
     1081 gcatgatgct ctgtctaccc tgtccttgtc agcactccca gtcgggttgt gtgtgtggga
     1141 tggaatggag tagggctgca atctggtggc taccttcctg gtgagaagtg agattaggcg
     1201 ctggctctaa cgctgaccgt cttggtgcta gatgggaaat ggggcggcct ggctctagcc
     1261 catgctgctg ctgtttggga ccgtcattta ctgtgcagat gttggggact ggaggtcccc
     1321 atgggtttcc agtgcagctg actctggcat ggtggctgac tttcattttt c
//
