LOCUS       NM_001399087            1843 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus NECAP endocytosis associated 2 (Necap2),
            transcript variant 1, mRNA.
ACCESSION   NM_001399087
VERSION     NM_001399087.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Hong,S.J., Li,H., Becker,K.G., Dawson,V.L. and Dawson,T.M.
  TITLE     Identification and analysis of plasticity-induced late-response
            genes
  JOURNAL   Proc Natl Acad Sci U S A 101 (7), 2145-2150 (2004)
   PUBMED   14766980
REFERENCE   2  (bases 1 to 1843)
  AUTHORS   Ritter,B., Philie,J., Girard,M., Tung,E.C., Blondeau,F. and
            McPherson,P.S.
  TITLE     Identification of a family of endocytic proteins that define a new
            alpha-adaptin ear-binding motif
  JOURNAL   EMBO Rep 4 (11), 1089-1095 (2003)
   PUBMED   14555962
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1648419.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN06680413 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               JAXUCZ010000005.1  158665606-158665751 c
            147-247             JAXUCZ010000005.1  158662439-158662539 c
            248-352             JAXUCZ010000005.1  158660924-158661028 c
            353-434             JAXUCZ010000005.1  158660757-158660838 c
            435-543             JAXUCZ010000005.1  158659498-158659606 c
            544-712             JAXUCZ010000005.1  158656909-158657077 c
            713-1843            JAXUCZ010000005.1  158653347-158654477 c
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1843
                     /gene="Necap2"
                     /note="NECAP endocytosis associated 2"
                     /db_xref="GeneID:298598"
                     /db_xref="RGD:735063"
     exon            1..146
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..885
                     /gene="Necap2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     adaptin ear-binding coat-associated protein 2; NECAP-2"
                     /codon_start=1
                     /product="adaptin ear-binding coat-associated protein 2
                     isoform 1"
                     /protein_id="NP_001386016.1"
                     /db_xref="GeneID:298598"
                     /db_xref="RGD:735063"
                     /translation="MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSG
                     RLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR
                     AFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKI
                     NIANMRKKEGAAGAPRTRPASAGGLSLLPPPPGGKMSTLIPPSGEQFSGGSLVQPVSG
                     SGPPPASLSQALAGSSFDLRNLFLSRLLGRSCVTLAHGRRQIVLPGWPQAPCLAVLTA
                     "
     exon            147..247
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     exon            248..352
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     exon            353..434
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     exon            435..543
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     exon            544..712
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
     exon            713..1843
                     /gene="Necap2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtcctgaag gggcggggaa gaagccggaa gtcccgagag ctccggcggt agagatggag
       61 gagagcgagt acgagtctgt tctctgtgtc aagccagagg tccatgtcta ccgcatcccg
      121 ccgcgggcca ccaaccgtgg ttacagggcc tcagaatggc aactggacca gccatcctgg
      181 agtggccggc tgcggatcac tgcgaaaggg aaggtggcct acatcaagct ggaggacagg
      241 acctctgggg agctctttgc gcaggcccca gtggaccagt ttcccggcac cgctgtggag
      301 agtgtgacag actccagcag gtacttcgtt atccgaattg aagatggaaa cgggcgacgt
      361 gcttttattg ggattggctt tggggaccga ggggacgcct ttgacttcaa cgtggcattg
      421 caggaccatt tcaagtgggt gaagcagcag tgcgagtttg caaaacaagc tcagaaccca
      481 gatgaaggcc ccaagttgga cctgggcttc aaggagggcc agaccatcaa gatcaacatc
      541 gcaaacatga gaaagaagga aggagcagct ggggccccaa gaaccaggcc tgccagcgca
      601 ggagggctga gcctgctgcc ccctcctcca gggggcaaga tgtctacact catccctccc
      661 tctggagagc agttttctgg gggctctctg gttcagccag tttctggttc aggtccccct
      721 ccagccagtc tcagccaggc actggctggg tccagttttg acctacgtaa ccttttcctc
      781 agccgacttc tgggaaggag ctgcgtcacc ctggcccacg gaaggaggca gatagtcctt
      841 cctggctggc cccaggctcc ttgcctggct gtcttgacag cctgagcaca agaagcagta
      901 agttggcact gtgccacact gttgctgggg ctcgagtgct gctcaggcag aaaacaggag
      961 caaacactcc agggccccca agctcatcac cctccccact ggagacaacc agacctgcct
     1021 tcttccatcc agtgatcctt attaaacaca gcccccaaag cccagaatgg attgaattta
     1081 tggcctgggt tcagctctgc ctctcgggtt ggcaggtgtc ccagctttgc tattgggcag
     1141 ggacttctgc actccatcca cagtagcctt tgtcaggtac cttccagagg aggccttcct
     1201 gattgctagc aagtctttga gctgcagctc gaatgggccg tcgggggacc ctggaaggat
     1261 taagcagctt ttttgaaaat gttaatacat tactctgcta atatgctgac ctgcactaat
     1321 gcacccttgt gaggaccctc cgctgcgagg cctctgacac acccttctcc ctgccctgag
     1381 ccctggaggc agcagtggga gggcagcctg catacctggt tttatgactt tcaacctcag
     1441 gtgaggcagg ctctggaagc caactgcaca gtgttgtggg aagttgaagc attacagact
     1501 gggccaggct gcctgtcctc tggttctgct ctgggctcac aggttcatgg tgtagctggc
     1561 ccacttgtct ttcccggatg gcttctggag gaacatacct gtagatgctt ccttcctttc
     1621 cttcagagac tgtgacagag agagtttgtc agccggaagt ggccaccagg agtagtggtt
     1681 tataagaaat tactgtctct tcagtgaact tcctagtttc tttatagact taaccttccc
     1741 ttcagttaaa aggtttcttt tatgaagggt caagactgct gaccttgtgg gaccagagtt
     1801 ctaaagatgg aaaaaaaata aatgttttta cttctgtact aca
//
