LOCUS       XM_006235097            1056 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NADH:ubiquinone oxidoreductase complex
            assembly factor 5 (Ndufaf5), transcript variant X1, mRNA.
ACCESSION   XM_006235097
VERSION     XM_006235097.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006235097.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006235097.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1056
                     /gene="Ndufaf5"
                     /gene_synonym="RGD1309829"
                     /note="NADH:ubiquinone oxidoreductase complex assembly
                     factor 5; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 9 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 99 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:296190"
                     /db_xref="RGD:1309829"
     CDS             64..921
                     /gene="Ndufaf5"
                     /gene_synonym="RGD1309829"
                     /codon_start=1
                     /product="arginine-hydroxylase NDUFAF5, mitochondrial
                     isoform X1"
                     /protein_id="XP_006235159.1"
                     /db_xref="GeneID:296190"
                     /db_xref="RGD:1309829"
                     /translation="MLRRVVLSRLYARLGGPAVSAGRGGRRGVASSVPPSGSTSPRAL
                     NIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIGCGRGY
                     IAQHLNKETVGKIFQTDIAEHALKNSIETDIPTVNILADEEFLPFPENTFDLVVSSLS
                     LHWVNDLPRALEQIHYVLKPDGVFVGAMFGGDTLYELRCSLQLAETEREGGFSPHISP
                     FTAVNDLGHLLGRAGFNTLTVGWVRATVLGTEKPCCTETQCWQLRRCTEKCTAMRMVP
                     FLPHIRSTI"
ORIGIN      
        1 cgtagtccct ttggcgcatg cgcacaatag aaaacatgcc cagctgtagc gccgcggcta
       61 gagatgctgc gacgagtcgt tctttcgcgc ctatacgcaa ggcttggagg tcctgctgtc
      121 tctgcaggga gaggtggtcg caggggggtc gcttccagtg ttcctccttc gggcagcacc
      181 tcgcccagag ctctaaacat cttcgacagg gaattgaaga ggaagcagaa gaattgggct
      241 gcccggcagc ccgagcccat gaaatttgac tacctgaagg aggagattgg aagtcggatt
      301 gcagaccgtg tatacgacat agccagagat tttccccttg cactggacat aggatgtgga
      361 agaggctaca tagcacaaca tttgaataag gagactgtgg gaaagatctt ccaaacagac
      421 attgcagaac atgctttgaa aaattccata gaaacagata ttcctactgt gaatatttta
      481 gctgatgaag aattccttcc cttcccagaa aacacgtttg acctggtggt tagcagctta
      541 agtttgcact gggtgaatga cctccctaga gcacttgaac agattcatta tgtcttaaaa
      601 ccagatggag tgtttgttgg tgcaatgttt ggaggtgaca cgctctatga actccggtgt
      661 tcactacagt tagcagagac agaaagggaa ggaggctttt ccccacacat ttctcctttc
      721 actgctgtca atgacctagg gcatctgctg ggaagagctg gcttcaacac tctgactgtg
      781 ggatgggtga gagcaactgt tcttggaaca gaaaagccct gctgcaccga gacacaatgc
      841 tggcagctgc ggcggtgtac agagaaatgt acagcaatga ggatggttcc attcctgcca
      901 catatcagat ctaccatatg ataggatgga aataccatga ctctcaggca aggccagctg
      961 aaagaggttc agcaaccgtg tcatttggag atctagcaag actaaatgat accatgtcac
     1021 aggggaaaaa ataataaaca tttgattcaa ttgtaa
//
