LOCUS       XM_039086705            8337 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor co-repressor 1
            (Ncor1), transcript variant X35, mRNA.
ACCESSION   XM_039086705
VERSION     XM_039086705.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086705.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8337
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8337
                     /gene="Ncor1"
                     /gene_synonym="Rxrip13"
                     /note="nuclear receptor co-repressor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 mRNAs, 73 ESTs, 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 211 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54299"
                     /db_xref="RGD:3612"
     CDS             259..7515
                     /gene="Ncor1"
                     /gene_synonym="Rxrip13"
                     /codon_start=1
                     /product="nuclear receptor corepressor 1 isoform X29"
                     /protein_id="XP_038942633.1"
                     /db_xref="GeneID:54299"
                     /db_xref="RGD:3612"
                     /translation="MSSSGYPPNQGAFSTEQSRYPSQSVQYTFPSTRHQQEFAVPDYR
                     SSHIEVSQASQLLQQQQQQQQLRRRPSLLSEFHPGSDRPQERRTGYEQFHSGPSPVDH
                     DSLESKRPRLEPVSDAHFQRVSAAVLPLVHTLPEGLRASADAKKDSAFGGKHEAPSSP
                     LAGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPP
                     EPEKPVSPPPVEQKHRSIVQIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVY
                     HENIKTNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENNPRRKA
                     KESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQE
                     NNEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFK
                     DKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIAR
                     PSQEEKVEEKEEDKAEKMEKKEEEKKDDEEKDEKEESKETTKEKDRTEATAEETEERE
                     QVTPRGRKTANSQGRRKGRITRSMTSEAAAASAAAAATEEPPPPLPPPPEPVSTEPVE
                     TSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQH
                     KQKVSRAVVASRKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEAVPTTKP
                     AESESVEAQVTDSASVETAEPMDVDHEECGAQGSSVLDPPAPTKADSVDPEIQVPENT
                     ASKGEGDAKDRDLESASEKTEARDEDLVVAEQMQRPEPQSDNDSSATCSADEDVDGEP
                     ERQRVFPMDAKPSLLNPPGSILISSPIKPNPLDLPQLQHRAAVIPPMVSCTPCNIPIG
                     TPVSGYALYQRHIKAMHESALLEEQRQRQEQIDLECRSSTSPCGTSKSPNREWEVLQP
                     APHQVITNLPEGVRLPTTRPTRPPPPLIPSSKTTVASEKPSFIMGGSISQGTPGTYLT
                     SHSQAYTPEAAKPSVGSISLGLPRQQESTKSAPLTYIKQEEFSPRSQNSQPEGLLVRA
                     QHEGVVRGTAGAVQEGSITRGTPASKISVESISSLRGSITQGTPALPQAGIPTEALVK
                     GPVSRMPIEESSPEKVREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEMS
                     LKRSYESVEGNVKQGMSMRESPVSAAPLEGLICRALPRGSPHSDLKERTVLSGSIMQG
                     TPRATAESFEDGLKYPKQIKRESPPSRAFEGAITKGKPYDGITTIKEMGRSIHEIPRQ
                     DILTQESRKTPEVVQSTRPIIEGSISQGTPIKFDNNSGQSAIKHNVKSLITGPSKLPR
                     GMLEIVPENIKVVERGKYEDVKAGEPVRPRHTSVVSSGPSVLRSTLHEAPKAQLSPGI
                     YDDSSARRTPVSYQNTISRGSPMMNRTSDGSSSKTTSHERKSALTPTQRESVPAKSPV
                     PAVDSVVSHSPFDPHHRSTTAGEVYRSHLPTHLDPAMPFHRALDPAAAAYLFQRQLSP
                     TPGYPSQYQLYAMENTRQTILNDYITSQQMQVNLRPDVARGLSPREQPLGLPYPATRG
                     IIDLTNMPPTILVPHAGGTSTPPMDRITYIPGTQITFPPRPYNAASLSPGHPTHLAAA
                     ASAEREREREREKERERERERERERERERERERERERERERITAAPTDLYLRPGSEQP
                     GRPGSHGYVRSPSPSVRTQETMLQQRPSVFQGTNGTSVITPLDPTAQLRIMPLPSGGP
                     SISQGLPASRYNTAADALAALVDAAASAPQMDVSKTKESKHEAARLEDNVRSRSAAVS
                     EQQQLEQKNLEVEKRSVQCVCTSSALPSGKPQPHASVVYSEAGKDKGPPPKSRYEEEL
                     RTRGKTTITAANFIDVIITRQIASDKDARERGSQSSDSSSSLSSHRYEAPSDAIEVIS
                     PASSPAPPQEKPQAYQPEMVKANQAENESPQQYEGPLHHYRSQQGSPSPQQQPPLPPS
                     SQAEGMGQVPRTHRLITLADHICQIITQDFARNQVPSQPSTSTFQTSPSALSSTPVRT
                     KPSSRYSPESQSQTVLHPRPGPRVSPENLVDKSRGSRPGKSPERSHIPSEPYEPISPP
                     QGPAVHEKQDSMLLLSQRGMDPAEQRSDSRSPGSISYLPSFFTKLESTSPMVKSKKQE
                     IFRKLNSSGGGDSDMAAAQPGTEIFNLPAVTTSGAVSSRSHSFADPASNLGLEDIIRK
                     ALMGSFDDKVEDHGVVMPHPVGVVPGSASTSVVTSSETRRDEGDPSPHSGVCKPKLIN
                     KSNSRKSKSPIPGQNYLGTERPSSVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYN
                     PLTIRMLSSTPPTPIACAPSAITQAAPHQQSRIWEREPAPLLSAQYETLSDSDD"
ORIGIN      
        1 ccggcctgag ggggagggag tggggttgag gcaagatggc ggctaaggtg gcgaagctgc
       61 ggcggcggcc ggagtgagcg cccagctcgc cgcgccgagc gagggccggg cgtagggccg
      121 cgcgccgggg ccgcgccctg gtcgtccggc cgtggggcgc gccggctctc acgctccgcc
      181 agctcccggt tgcttcctag aaacatgatt gtttattgga cttgatctca cagcccagtg
      241 aggacgtctt tactgataat gtcaagttca ggttaccctc ccaaccaagg agctttcagc
      301 acagagcaaa gtcgttatcc ttcacagtct gtccagtata cctttcccag tacccggcac
      361 cagcaggaat ttgcagttcc tgactatcgc tcttctcaca tcgaagttag tcaggcatcg
      421 cagctcttac agcagcagca gcagcagcag cagcttcgaa ggcgaccttc cttgctttca
      481 gaatttcacc caggttctga caggcctcaa gagagaagaa ctggatatga acagtttcac
      541 tcaggaccct caccagtgga tcatgattcc ttggagtcca agcgtccacg cctggagcca
      601 gtttctgatg cccatttcca gcgtgttagt gctgcggttt tacctttagt tcacacgctg
      661 ccagaggggt tgagggcgtc tgcagatgct aagaaggatt cggcatttgg aggcaaacat
      721 gaagctccat cctctccatt ggctgggcaa ccatgtggag atgatcaaaa cgcttcacct
      781 tcaaagctct caaaggaaga gttaatacag agtatggacc gggtagacag agagattgca
      841 aaagtagagc agcagatcct taaattgaaa aagaaacaac aacagctaga agaagaagca
      901 gctaagcctc ctgagccgga gaagcctgtg tcccctcctc ctgtggaaca gaaacaccgt
      961 agtattgtcc aaattattta tgatgagaat cggaaaaaag ctgaagaagc tcataaaata
     1021 tttgaaggtc ttggcccaaa agttgaattg ccactctata accagccgtc agataccaag
     1081 gtgtaccatg agaacatcaa gacaaaccag gtgatgagga aaaaactcat tttatttttt
     1141 aaaagaagaa atcatgcaag aaaacaaagg gaacaaaaaa tctgccagcg ttatgatcaa
     1201 ctcatggagg catgggagaa aaaagtggac agaatagaaa ataatcctcg gaggaaagca
     1261 aaagaaagca aaacaaggga atactatgag aagcagtttc cagaaattcg aaaacaaaga
     1321 gaacaacaag aaagatttca gcgagttggt cagaggggag ctggtctttc agccaccatt
     1381 gctaggagtg agcatgagat ttccgaaatt attgatggcc tttctgagca ggagaataat
     1441 gagaaacaaa tgcggcagct ttctgtgatt cccccgatga tgtttgatgc agaacaaaga
     1501 agggtcaagt tcatcaatat gaatgggctc atggaggatc caatgaaggt ttataaagac
     1561 agacagttta tgaatgtttg gactgaccac gaaaaggaga tctttaagga caagtttatc
     1621 cagcacccaa aaaactttgg actaattgca tcctatttgg aaaggaagag cgtgcctgat
     1681 tgtgttttat attactattt aaccaagaaa aacgagaatt ataaagccct tgtgagaaga
     1741 aattatggga aacgcagagg cagaaatcag cagattgccc gtccctcaca agaagaaaaa
     1801 gtagaagaaa aagaagagga taaagcagaa aaaatggaga aaaaggaaga agaaaagaag
     1861 gatgatgaag aaaaagatga gaaggaagag tctaaagaaa caaccaagga aaaggataga
     1921 acagaagcca cagcagaaga aactgaggag agagagcagg tcactccaag ggggcgaaag
     1981 actgctaaca gccaagggcg tcggaagggc cggatcacca ggtccatgac aagtgaagct
     2041 gcagctgcca gtgctgctgc tgcagccact gaggagcccc ctccaccgct gccaccaccc
     2101 ccagagcccg tttctacaga accagttgag acttcaagat ggacggaaga agaaatggaa
     2161 gttgctaaaa aaggcctggt agaacatggt cgtaactggg cagccattgc caaaatggtg
     2221 ggaacaaaaa gtgaagccca gtgtaaaaac ttctatttta actataaaag acggcacaat
     2281 cttgacaacc ttttgcagca acataaacag aaagtgagta gagcagtagt ggcttcacga
     2341 aaaccccgtg aggaacgaga tgtgtctcag tgtgaaagtg ttgcttccac tgtgtctgcc
     2401 caggaggatg aagatattga agcctcgaat gaggaggaga atccagaaga tagtgaagca
     2461 gttccaacca caaaaccagc agaaagtgaa agcgtggagg cccaggtgac tgacagcgcc
     2521 agtgtggaga ccgcagagcc gatggatgta gaccatgagg agtgcggtgc ccaaggcagt
     2581 tctgttcttg atccaccagc ccctaccaaa gctgactccg tggacccaga aatacaggta
     2641 ccagaaaaca ctgcatctaa aggtgaaggg gatgccaagg acagagactt ggagagcgcc
     2701 agtgagaaga cagaggctag agatgaagac ttggtagtgg ctgagcagat gcagaggcct
     2761 gaaccacagt cagacaacga ctccagtgcc acatgcagtg cagacgagga tgtcgatgga
     2821 gagccagaga ggcagagagt gtttcccatg gatgcaaagc cttcactgtt aaatcctcca
     2881 ggatcaatac taatctcatc ccccattaaa ccaaacccat tggatctgcc acagcttcag
     2941 catcgagctg ctgttattcc accaatggtt tcttgcaccc catgtaatat accaattgga
     3001 acacctgtaa gtggctatgc tctttaccaa cggcacatta aggccatgca tgagtcagca
     3061 ctcctggagg aacagcggca gaggcaagaa cagatagact tggagtgcag aagttctaca
     3121 agcccgtgtg gcacttctaa gagtccaaac agggaatggg aagtcctcca acctgctcca
     3181 catcaagtga taactaacct tcctgaaggg gttcggcttc caacaacacg accaaccagg
     3241 ccaccacctc ccctcatccc atcgtccaaa accacagtag catcagaaaa accatccttt
     3301 ataatgggag ggtccatctc acagggaact cctggcactt acttgacttc tcatagtcag
     3361 gcttatactc cggaagcagc taagccctca gtggggtcta tctctcttgg attgccacgg
     3421 cagcaggaat ctaccaagtc agctcctttg acctacatca agcaggaaga attttctcca
     3481 cgaagccaaa actcacagcc tgagggttta ttggtgagag cgcagcatga aggtgtggtc
     3541 agaggcactg caggggctgt ccaagaagga agtataactc ggggaactcc agccagcaag
     3601 atctcagtgg agagcatttc atccttgcgg ggctctatta cccaggggac cccagctctg
     3661 ccccaggctg gcataccaac agaggctttg gtgaagggac ctgtttccag gatgccaatt
     3721 gaggaaagca gtcctgagaa ggtcagagag gaagctgcat ccaaaggcca tgtcatctat
     3781 gaaggcaaaa gtggacatat cttatcatat gacaatatta agaatgcccg agaagggact
     3841 cggagtccaa gaacagctca tgaaatgagt ttaaaaagaa gctatgagtc agtggaagga
     3901 aatgtaaagc aaggcatgtc gatgagggag tctcctgtgt cagcagcacc tttagagggt
     3961 ctgatatgcc gagcattacc cagggggagt cctcattctg acctcaaaga aaggactgtg
     4021 ctgtctggtt ccataatgca gggcacacct agagcaacag ccgaaagctt tgaagatggc
     4081 cttaaatacc ccaaacagat aaaaagggaa agccctccta gtcgagcatt tgaaggtgcc
     4141 attaccaaag gaaaaccata cgatggcatc accaccatca aagaaatggg gcgttccatt
     4201 catgaaattc caagacaaga tattctaact caggaaagcc ggaaaactcc agaagtggtc
     4261 cagagcacga ggccaataat tgagggttcc atttcccagg gcacaccaat aaaatttgac
     4321 aacaactcag gtcaatcagc tatcaaacac aatgtgaagt ccttaatcac agggcctagc
     4381 aaactacccc gaggaatgct ggaaattgta ccagaaaaca taaaagtagt agaacgggga
     4441 aaatatgagg acgtgaaagc aggcgaacca gtgcgacccc ggcacacgtc agtggtgagc
     4501 tctggcccct ccgttctcag gtctacactt catgaagctc ccaaagcaca gttgagcccg
     4561 ggaatctatg atgacagcag tgctcgcagg actcctgtga gttaccagaa caccatatcc
     4621 agaggctccc ccatgatgaa cagaacttct gatggttctt ccagcaagac taccagccac
     4681 gagaggaagt cagctctgac cccaacccaa agagaaagtg tcccagccaa gtctccagtg
     4741 cctgccgtgg actccgtcgt gagtcacagt ccatttgacc cccatcatag gagtaccact
     4801 gcaggagagg tttatcggag ccatcttccc acgcacttgg atccagccat gccctttcac
     4861 agggctttgg atcctgcagc tgctgcttac ctgtttcaga gacagctttc accaacccca
     4921 ggatacccaa gtcagtacca gctttatgca atggagaata caagacagac aatcctaaat
     4981 gattacatta cctcacagca gatgcaagtg aatttgcgcc ctgatgttgc caggggactg
     5041 tccccacgag agcagccact gggtctccct tatccagcta caagaggaat cattgacctg
     5101 accaatatgc ctccaacaat cttagtgcct catgcagggg ggacaagcac ccctcccatg
     5161 gacagaatca cttatatccc tggtacacag attactttcc ctccgaggcc atacaatgct
     5221 gcttctttgt ctccaggaca cccgacacac cttgcagcag ctgcaagtgc tgagagagaa
     5281 cgagagcggg aaagggagaa ggagcgagag agagagcgtg agcgcgagcg cgaacgtgaa
     5341 cgcgaacgcg aacgtgaacg cgaacgcgag cgtgagcgtg aaaggatcac tgctgctccc
     5401 actgacctct acctacgacc aggttcagaa cagccaggcc gccctggtag ccacggatat
     5461 gttcgctccc cttccccttc agtaagaact caggagacca tgttgcaaca gagacccagt
     5521 gttttccagg gaaccaatgg aaccagtgtg atcacgcctt tggatccaac tgctcagcta
     5581 cgaatcatgc cactgccttc tgggggccct tccataagtc aaggcctgcc agcctcccgt
     5641 tacaacactg ctgcggatgc cctggctgct cttgtggacg ctgcagcttc tgcaccccag
     5701 atggatgttt ccaaaacaaa agagagtaag catgaagctg ccaggttaga agacaatgtg
     5761 agaagcaggt cagcagcagt tagtgagcag cagcagctag agcagaaaaa cctggaggtg
     5821 gagaagagat ctgttcagtg tgtgtgcacc tcttcagccc ttccaagtgg caagccccag
     5881 cctcatgcct ccgtagtgta ttctgaggct gggaaagata aagggcctcc tccaaaatcc
     5941 agatatgagg aagagctaag gacccgaggg aagactacca ttactgcagc taacttcata
     6001 gacgtgatca tcacccggca aattgcctcg gacaaggatg caagggaacg tggctctcaa
     6061 agttcagact cttctagtag cttgtcttct cacaggtatg aagcacctag tgatgctatt
     6121 gaggtgataa gtcctgccag ctcacctgca ccaccccagg aaaaaccaca ggcctatcag
     6181 ccagagatgg ttaaggcaaa tcaagcagaa aatgagtccc ctcaacagta tgaaggacca
     6241 ctgcatcatt atcggtccca gcagggatca ccgtctccac agcaacagcc accactgccc
     6301 ccatcgtccc aggcagaggg aatgggacag gtgcccagga cccatcgact gatcacactt
     6361 gctgaccaca tctgtcaaat tatcacacaa gattttgcta gaaatcaagt tccctcgcag
     6421 ccttctactt ctacattcca aacttcacca tctgctttgt cgtccacacc tgtaagaact
     6481 aaaccgtcaa gtcgctacag cccagagtct cagtctcaga ctgtcttgca tcccagacca
     6541 ggtcctagag tctctccaga aaatcttgtg gataaatccc ggggaagcag gcctggaaaa
     6601 tccccagaga ggagtcacat cccatcggag ccctatgagc ccatctcccc accccaaggt
     6661 cctgctgtgc atgagaagca ggacagcatg ctgctcttgt cacaaagggg aatggatcct
     6721 gccgagcaaa ggagtgattc tcgatcacca ggaagtataa gctacttgcc ttcattcttc
     6781 accaagcttg aaagcacatc acccatggtt aaatcaaaga agcaggaaat ttttcgtaag
     6841 ttgaactcct ctggtggagg tgactctgat atggcagctg ctcagccagg aacagagatc
     6901 ttcaatctgc cagcagttac tacatcaggt gcagtaagct caagaagcca ttcttttgct
     6961 gatcctgcca gtaatcttgg tctagaagac atcatcagaa aagctctcat gggaagtttc
     7021 gatgacaaag ttgaagatca tggtgttgtc atgcctcatc ctgtgggagt tgtccctggt
     7081 agtgctagca cctcagttgt gacgagcagt gagacacgga gagatgaagg ggacccatca
     7141 cctcattcag gagtgtgcaa accaaagctg atcaacaaat cgaacagcag gaagtctaaa
     7201 tctcctattc ctgggcagaa ctacttagga actgaaaggc cttcttctgt ctcctctgta
     7261 cattcagagg gtgattacca caggcagaca ccaggatggg cttgggaaga caggccgtct
     7321 tcaacaggct ccactcagtt cccttacaac cctctgacca tccggatgct gagcagtacc
     7381 ccgccaaccc cgatcgcctg tgccccgtca gccatcaccc aggcagctcc gcatcaacag
     7441 agccgcatct gggagcggga gccggccccg ctcctctcag cacagtatga gacactgtct
     7501 gacagtgacg actgagctgc acaggagagc actctggctt tgattttaat tgcagataaa
     7561 aaaaaaaaat ctgccctcct atgatttgtg cccagagact tctcaggaga gccagggcta
     7621 cggatgagga agaaatgatg gaaattcatt tggaaaaatc aaatgggaaa aaaaaaattt
     7681 gcctccaata caggcaattc aatggattat aacagtggag agttgtagag ttttttttaa
     7741 aactggacaa ttcttgttct tacatctgtt tgtaaagaaa accatgatgt ctttaaatca
     7801 ctcttctgta aatagatgac ctttttgcag tgtatcccct tgctgtagta tctggtgtac
     7861 ttaaatttaa atcagcgaat caacacttgg ggtaattttt aaaattcttt gtgtatcttt
     7921 ttaaccccag ccttctaaac aacctcacac agcccagttc cacagtgctg gctgtcatgg
     7981 gcattgtact tttgtttcct cgaaattcag ctttcccagt gatgtttaaa tcttgtggaa
     8041 atacttaggt ttttaacaca taccctgtca taaagcctgt atgaggtcaa aggcaggagc
     8101 agcagaactg tcatattgtg agttccagtg caggctttac tttcttcatt agtagcactg
     8161 aaaaaattac tgcatgggta tgttatagtt cagttttaaa gtttaaaggc ttattcgagg
     8221 catacctcaa tgtttatgca cactggtaat ttaaccatgc ccctaagtat tcttctgcat
     8281 ttgatgcagc ccaacaaagc ttctgttctg aaataaattt tgactatcct gtccata
//
