LOCUS       XM_039099278            5473 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor coactivator 7
            (Ncoa7), transcript variant X1, mRNA.
ACCESSION   XM_039099278
VERSION     XM_039099278.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099278.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5473
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5473
                     /gene="Ncoa7"
                     /note="nuclear receptor coactivator 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 35 ESTs, 1 long SRA read, 20 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:498995"
                     /db_xref="RGD:1566426"
     CDS             624..3557
                     /gene="Ncoa7"
                     /codon_start=1
                     /product="nuclear receptor coactivator 7 isoform X1"
                     /protein_id="XP_038955206.1"
                     /db_xref="GeneID:498995"
                     /db_xref="RGD:1566426"
                     /translation="MDTKEEKKEPKERKQSYFARYKYLIIQNTAATESNQNRSPLEHA
                     KSFPSRSRLKKKKQAKQNAEIVSAARSHSGKDDSHSVILEQDKSNIAAEGDQSTDEKK
                     KRKNNQLKEIRRMELKRYYNADDNQSKSHDKKEKKMVVQKPQGTLEYTAGSQDTLNSV
                     ALKFNVTPNRLVELNKLFTHTIVPGQVLFVPDANIPSSTLRLSSSTPGATVSPSSSDA
                     EYDKLPDADLARKALKPIERVLSSTSEEDEPGVVKFLKMNCRYFTDGKGVVGGVMIVT
                     PNNIMFDPHKSDPLVIENGCEEYGLICPMEEVVSIALYNDISHMKIKDALPSDLPRDV
                     CPLYRPGEWEDLASEKDINPFSKFKSINKEKRQQNGERTLALDVKSVGSPEESTERMR
                     TRTEPPDDSESWKLKNLEYSRGTASEFPSVTQLSKGPSSVCAALEPTAKENRLLGDED
                     FVDLEELSSQPGSGMDKGDARKECLPYDQKKDAPQTIMSAKKGEEQSAPDVTGTESDA
                     ELKGALDSETGEKQDEAPEVDKQSGSPENWRESTLSIHEDLDKVKLIEFYLNKNKEGS
                     QLSENVLKSELSERKSIEPDGIDITLSSSLPQAGDSPPESHKEPGTLCVKGGGTPPPK
                     LHPSAEETVTNNKEALDSLESSLDKLCQGAQMDNRSEIQLWLLKRIQVPIEDILPSKE
                     EKSKTPPMFLCIKVGKPMRKSFASHSTTMVQQYGKRRKQPEYWFAVPRERVDHLYTFF
                     VQWSPDVYGKDAKEQGFVVVEKEELTMIDNFFSEPTTKSWEIITVEEAKRRKSTCSYY
                     EEEEEEEEGLPILQSHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLY
                     RKSASLDSPVLLVIKDMDNQIFGAYATHPFRFSDHYYGTGETFLYTFSPNFKVFKWSG
                     ENSYFINGDISSLELGGGGGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIVQDLE
                     VWTFE"
ORIGIN      
        1 gagccgccgg gcccaggttt ggggtggatc cgagccacct cggggcttcc agcctgcggc
       61 tcggaggtcg caccggggca ggcaagatgc cgctgctgca gccggagccg ctagggcggg
      121 cctctgagct cccggatccc cgccgcagca gaccagtgca gcgcgcgccc cgggtcgggc
      181 ggagctagag gcgggcgccg ggcgggcgtc gcgccacccg cagctccccg ccttccgctc
      241 cgtgcgtgcc ccgtgccttg accgtgggtg ccgctgctgg cacctgggcg aggcttcgag
      301 catcccggcg gcggctgctc cggccagatc agcgctccgg aaacccctca ggagcgctcc
      361 tcgccgcctc ttgctgcttc ccttcgctcc tcctcggcga aacgatcccg cccccccccc
      421 cctgcccccc gtccttttcc ctcctcccac acgggaggat gcgctcccca gcgcccggcg
      481 gcagaggggc cacggctccc agaaatgcgt gcgcccgagc cacttcgccc ggacccgcgg
      541 agcccgcgcc cccgcccagt aggaatatga ctcactgatc aaagaggacc tttccaaata
      601 ctgtgcactt ttagttgtat attatggata ctaaggaaga gaagaaggaa ccgaaggaac
      661 ggaaacagag ttactttgct agatataaat atttaatcat acagaataca gctgcaacgg
      721 aatcgaacca aaatagatcc cctttggaac atgcgaagtc cttcccgtcc aggagcagac
      781 ttaaaaagaa aaaacaagcc aaacaaaatg cagagatagt ctcagccgca cggagccact
      841 ccgggaaaga tgattctcat tcagtcattt tggaacaaga caagtccaac attgcagcgg
      901 agggggacca gagcactgat gagaaaaaga agagaaaaaa taatcagcta aaggaaatca
      961 ggcgcatgga actgaagaga tactacaatg ctgatgacaa tcaaagcaaa agtcatgata
     1021 agaaagagaa gaagatggtg gtacagaagc cccagggtac cttggaatat actgccggaa
     1081 gccaggacac cctcaactct gttgcactga agtttaatgt cactcctaat agattagtgg
     1141 aattgaataa actcttcaca catactattg ttccaggcca ggttctgttt gtgccagatg
     1201 ccaacatccc ttctagtacc ttacggctct cgtcatccac ccctggtgct actgtgtccc
     1261 catcatcatc agatgcagag tatgacaagc tgcctgatgc agacttagca agaaaggcct
     1321 taaaacccat cgagagggtc ttatcatcca cttctgaaga ggacgagcca ggtgttgtaa
     1381 aattcctcaa aatgaactgt cgctacttca ctgatggaaa gggtgtggtt gggggtgtca
     1441 tgattgtcac tcctaacaac atcatgtttg accctcataa gtccgacccc ttggtgattg
     1501 aaaacgggtg tgaagagtat ggcctcatct gtcccatgga agaggtggtc tccattgccc
     1561 tgtacaacga catttcccac atgaagatca aggacgctct gccatctgac ctacctcggg
     1621 atgtttgtcc tctgtacagg cctggagaat gggaagacct ggcttcggag aaggatatca
     1681 atccgttcag taagttcaag tccatcaaca aggaaaaacg gcagcagaat ggggagagga
     1741 ccctcgcttt agacgtcaaa tcagtgggct cgcctgagga gtcaacggaa cgcatgcgca
     1801 cacgtacgga gcccccggac gactccgagt cctggaaatt aaagaatctg gagtattcca
     1861 ggggaacagc cagtgagttt ccctcagtga ctcagctcag taagggacct tccagcgtat
     1921 gtgctgcttt agaacctaca gccaaagaaa accgtctttt aggagacgag gactttgttg
     1981 acttggaaga actttcctct caacctggga gtggcatgga caaaggagat gccaggaaag
     2041 aatgccttcc ttatgaccaa aagaaggatg cgccacaaac aatcatgtct gcaaagaaag
     2101 gggaggagca gtcagcccca gacgttacgg gaacagagag cgatgctgaa ctgaaggggg
     2161 ccctagattc agaaaccggt gagaagcaag atgaagcgcc agaagtcgac aaacagtctg
     2221 gatccccaga aaactggagg gaaagtacgc tcagtataca tgaagatcta gataaagtta
     2281 aactcattga attctacctg aataaaaaca aggaaggctc acagctgtca gaaaatgtgc
     2341 tgaagtcaga actcagtgaa cgcaaaagta ttgaaccaga cggaatagac atcacactta
     2401 gtagctcact tcctcaagca ggtgattccc cacctgagag ccacaaagag ccaggtacac
     2461 tctgtgtaaa agggggagga actccgcccc caaagctaca tcctagtgca gaggaaactg
     2521 taactaacaa taaggaggct ctggattctt tggaatcatc tctagacaag ctctgtcagg
     2581 gtgcacagat ggataataga tctgagatcc agttatggct gctaaagaga attcaggtac
     2641 ccatcgaaga tatacttccc tcaaaagaag aaaagagtaa gaccccaccc atgtttctgt
     2701 gcatcaaagt gggaaagcca atgagaaaat cctttgccag tcacagcacc accatggtcc
     2761 agcagtacgg caagaggaga aagcagcctg aatactggtt tgctgttccc cgggagaggg
     2821 tggatcactt gtacaccttc ttcgttcagt ggtctcctga tgtctatggg aaagatgcca
     2881 aggagcaagg ctttgtggtg gttgagaagg aagaactgac catgatcgac aatttcttca
     2941 gtgagccgac caccaagagc tgggagatca tcacagttga ggaggcaaaa cgcaggaaga
     3001 gcacttgcag ctactatgag gaggaagagg aggaggagga gggactgccc atcctgcagt
     3061 cccacagtgc gctcctggaa aacatgcaca tcgaacagct ggcccgacgc cttccagcca
     3121 gggtacaagg ctatccctgg agactggcct acagcacatt agagcatgga acaagcttaa
     3181 agactctcta caggaagtca gcatctctag acagtcctgt tcttttggtc atcaaagaca
     3241 tggataacca gatatttggg gcgtatgcaa ctcatccctt caggttcagt gaccactatt
     3301 acggcacggg cgaaacgttt ctctacacct tcagtcctaa tttcaaggtc tttaagtgga
     3361 gcggagaaaa ctcctatttt atcaatggag acataagttc tttagaactc ggtggtggag
     3421 ggggacggtt tggtctgtgg ctagatgctg atttgtatca tggacgcagc aattcttgca
     3481 gtacttttaa taatgatatc ctttcgaaaa aagaagactt catagttcag gacctagagg
     3541 tatggacatt tgagtgaaat ccaggctgcc ttaaaacata acatggaaaa gactgggcta
     3601 gaatagccgc ttactggaag gcaggccccg gccctggctg cctcatccca cagcagcgct
     3661 ttctttctat ggtcgtctca gagcatcatc accgcgcaga cagatcctgg aaggttgcct
     3721 gtggaggaca gacaccgaag acagaaatct gaagtccaga ttgtttaaaa caaaaagact
     3781 ttgtacctcc actgctttca aattcacacc atgaggaatc ggagtgttca tagatgtatg
     3841 agtcggatgc gatttttatt tttggtaact gtgaaaaaat aagatactgt ggaagtatat
     3901 acctgcttta tgtatttatc agcataattt taccaaatgt atacctattg tttgccatag
     3961 aaagctgaat ctgatttaga gaaattgaaa gaatatagca cttaaaggga atatctaatt
     4021 ttttaagaac ttttatttat tatttttagt atattatctg aaatatgttg attttttttc
     4081 ttttaatgtg tcaaatcctg aaataaatgt atgttttgtg ctatgtttgg gaaacaagtc
     4141 tcttttgatt tgtacagttt tatattcatt ttttttgccc tgattattta gggtaatata
     4201 gtctttattt attaagagag agtgtatgtg tgttttcaaa agttcattac tgatgttttt
     4261 tgacctgact ttatagagcg gctttttatt tagtttgtaa ggtactcctt gagtacccta
     4321 agcatttgtg ggaaacagaa catggcatct ctcacagttg taagttggtg tttatcgaaa
     4381 tacagatctt cacgaacatg aatgtacaag tcgtccttct accaagagaa tgtttgcttc
     4441 ttttgaaatc gtgtgaatca tgtattaata atagtaactt ggtctcttat tttacctctt
     4501 ttcttttttt tttttttatt ttacattgtt tcttctccag gtgtttacat gaatggtagt
     4561 cctctgttaa aagggagtgt ttaatttgtg cgtctttaaa gtcagataaa agatgtcaag
     4621 ttggaccaac tttcttggtt tctggaatca ataagatcca gataataatg atccaatcca
     4681 ataaggaggg aaaaaaaaac aattcaaaga gttatattca tatcacaatt gaaagaaaaa
     4741 aggaaatcta ttttgtaaaa tataaactca ctttcgcatc atagggcacc ttttatttta
     4801 aatagtgaga agtaaagtca tgaatgccat tgatcggctc ccgtgtatga aggccaaaga
     4861 ctgctgatgg aaagacttaa ataacagcca aagccgaaaa gttgtctgtc gccaattatg
     4921 cccccgtgat ctttctgaat gggaaatgag caaaccgtgt ttacacatct gtttatgttc
     4981 ggaatattgt cgagtcttta gactctttgt aagaaaacac tgtcctgtgc cctgcctcaa
     5041 gccagttgtg tcattcactg ccactccata ctagcttaag ggaatgctgt aaaattttaa
     5101 atctgtagac cacatacacc ttttacccaa gttctcccat tgaggactct tgcttaaaaa
     5161 catgcaattt gactttggtc tgctcacaca catgattggc gagatcccag gaatgtcacg
     5221 tggtgatttt gttcaccgtt tagaccgtct gtaaccatac gctgttgatg aacaagatgg
     5281 tcattttgcc ctgtagatta ctcttaccta gtttagtccg tgatgctgta ctcgtgagag
     5341 catttccaga tgctgtgttc tctatttaaa acagtattgt ctgaacagga atgtgtggcc
     5401 cttcattatg gataccaact acatgtaatg cagtgctact ccaatatttt caataaagga
     5461 atttatgcat tca
//
