LOCUS       XM_039104104            6942 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear receptor coactivator 6
            (Ncoa6), transcript variant X4, mRNA.
ACCESSION   XM_039104104
VERSION     XM_039104104.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104104.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6942
                     /gene="Ncoa6"
                     /gene_synonym="Aib3; NRC; PRIP; RAP250; Trbp"
                     /note="nuclear receptor coactivator 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 40 ESTs, 5 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 148 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116464"
                     /db_xref="RGD:620111"
     CDS             282..6425
                     /gene="Ncoa6"
                     /gene_synonym="Aib3; NRC; PRIP; RAP250; Trbp"
                     /codon_start=1
                     /product="nuclear receptor coactivator 6 isoform X3"
                     /protein_id="XP_038960032.1"
                     /db_xref="GeneID:116464"
                     /db_xref="RGD:620111"
                     /translation="MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILE
                     DSTIFVAFKGNIDDKDFKWKLDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPR
                     EAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALGQNRSQDVRMNGPVVSGNSVR
                     MEAGFPMASGPGLIRMTSPATVMMPQGGNASSSMMAPGPNPELQPRTPRPASQSDAMD
                     PLLSGLHIQQQSHPSGSLPPAHHPMQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQ
                     QQQQQLQTRPLQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGPM
                     TTNQGWKKAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNP
                     GQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMG
                     PRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGAGQ
                     ANPNFMQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPQNQMQVSHGPPNMMQ
                     PSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQ
                     GTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQ
                     MMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNM
                     VQFTGQMSGQMLPQQGPVSNSPSQVMGIQGQVLRPPGPSPHMAQQHTDPATTANNDVN
                     LSQMMPDVSMQQTSMVPPHVQSMQGNSASGSHFSGHGVSFNAPFGGAPNGTQMSCGQN
                     PGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKQKKKKPPRKKKNCHQD
                     LNTPDSRPAGLEEVDQQSLPGEQGINLDNTGPKLPDFSNRPPGYPTQPVEQRPLQQMP
                     PQLMQHVAPPPQPPQQQPQPQLPQQQPQPQPPPPSQPQSQQQQQQMMMMLMMQQDPKS
                     IRLPVSQNVHPPRGPLNPDSQRVPMQQSGNVPVMVSLQGPASVPPSPDKQRMPMPVNT
                     PLGSNSRKMVYQESPQNSSSPLGEMPSLPEAGGSEVPSVSGGPSNMPSHLVVSQNQLM
                     MTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPY
                     YPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPT
                     TLKAIGQAPSNLTVSNPPNFAAPQAHKLDSVVVSSGKQSNPGTTKRASPSNSRRSSPG
                     SSRKTTPSPGRQNSKAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNN
                     NGLNSQNPTVPAPAVGTVVEDNKESLNVPQDSDCQNSQGRKEQVNTELKAVPIQEAKM
                     VVPEDQSKKDGQPLDPNKLPSVEENKTLMSPAMREAPTSLSQLLDNSGAPNVTIKPPG
                     LTDLEVTPPAVSGEDLKKASVIPTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVS
                     SNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMS
                     TVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPATPLT
                     TNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLVLSSRATPVP
                     LPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPSSQPTTVVSPLLANS
                     PGSSANRRSPVSSSKGKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLE
                     TTTPGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGGALPTSVRS
                     VVTTLVPSELISTAPTTKGNHGGITSEPLAGGLVEEKVGSHPELLPSIAPSQTLVPKE
                     SPATALQGSVGRPELEANAAIASGQSSEPKETVEKSKTPSRRNSRTEEPTMASENVEN
                     GHRKRSSRPASASSSTKDITGAVQSKRRKSK"
ORIGIN      
        1 ggcggccggg cgccgacggc cggacagacg ggcacacaac gaggaagggc ggacggacgc
       61 gccgagggcg ctgggcacgc acggcccggg ccggcgctgc gaggcccgcc cgggagggcc
      121 ggggccgcgc tcagaactct gatttggctg ctactttgac atataagccc tgaagatgcc
      181 accgtgcttg gacttagagg atgatctgga taagtgagaa aagttaaggc attttggttt
      241 tcttactgtt cactttgcat atacttctgg actaatacac catggttttg gatgaccttc
      301 caaactttga agacatctat acttccttgt gttcatcaac aatgggagac tcagaggtgg
      361 agtttgactc tggactagaa gatgatgaca caaaaagtga tagtattttg gaggattcta
      421 caatttttgt agccttcaaa ggaaatatag atgataaaga cttcaaatgg aaactggata
      481 caatcttaca gagtgtgccc ggcttgttac acatggaatc cagcaagctg aaggtacaga
      541 aagtggagcc ctggaacagc gtgcgagtca cattcaacat cccccgggaa gcagcagagc
      601 ggttacggat cctggctcag agcaacaacc agcagcttcg ggatctgggg attctctccg
      661 ttcagattga aggggaaggt gctatcaacc tggctttggg tcagaaccga agccaagacg
      721 tgagaatgaa tggacccgtg gtatctggaa attccgttag gatggaggca ggatttccca
      781 tggcaagtgg tccaggacta ataagaatga caagccctgc cactgttatg atgccccagg
      841 gcgggaacgc atcatcttcc atgatggcac caggccccaa tccagaactg caacccagga
      901 ctcctcgccc tgcttctcag tcagatgcga tggatccact tctctctgga ctccatatac
      961 agcaacagag tcatccctca ggatctttac ctccagcgca tcacccaatg caacctgttc
     1021 ctgtgaacag acaaatgaac ccagctaatt ttccccagct gcagcaacag cagcagcaac
     1081 agcagcagca gcagcagcag cagcaacagc agcagcagca acagttgcag actagacctt
     1141 tacaacaaca tcagcagcaa cagccacagg ggattcgacc acagtttact gctccaactc
     1201 aggtgcctgt tcctccaggc tggaaccagc tgccttctgg agccttacag cctccaccag
     1261 cccagggatc tctgggccca atgactacaa atcaagggtg gaagaaggct cccttgccta
     1321 gcccaatgca agcgcaactt caggcaagac cttccttagc cacggtacag acaccttctc
     1381 accctccccc tccttatcct tttggcagcc aacaagcctc acaagcccat acaaactttc
     1441 ctcaaatgag caacccaggc cagttcacag ctcctcagat gaagagcttg cagggaggac
     1501 cctccagggt cccaaccccc ctgcaacagc cccacctcac caacaagtct cctgcctcct
     1561 caccctcctc cttccagcag ggatcccctg catcctcccc aacggttaac caaactcagc
     1621 agcagatggg accaaggcca cctcaaaata acccactttc ccagggattt cagcagcctg
     1681 tcagctctcc gggtcggaat cctatggttc aacagggaaa tgtgccacct aacttcatgg
     1741 tgatgcagca gcagccacca agccaggggc caccgagttt acacccaggc ctaggagcag
     1801 gacaggccaa tcccaacttt atgcaaggtc aggtgccttc caccacagca gccacccctg
     1861 ggaattcagg agcccttcag ctgcaagcaa atcaaagtgt ccagcatgca ggtggtcaag
     1921 gagctggtcc tcctcaaaac cagatgcagg tgtctcacgg gccaccaaat atgatgcaac
     1981 ccagcctcat gggaattcat ggcaacataa acaaccagca ggctggtagc tctggggttc
     2041 ctcaggtgac cctgggcagc atgcaaggcc agccccagca gggcccacca tctcagctaa
     2101 tgggcatgca ccaacagatt gtgccctcac agggccaaat ggcccagcag caaggaactt
     2161 tgaaccctca aaaccctatg atcctttcaa gggcccagct tatgccacag ggccagatga
     2221 tggtgaacgc tcagaaccaa aatcttggac cttcacccca aaggatgacc ccacccaagc
     2281 agatgcttcc ccagcagggc ccacaaatga tggcgccaca taaccagatg atggggcctc
     2341 aggggcaagt gttgctccag cagaatccaa tgatagagca aataatgacc aatcagatgc
     2401 aggggaataa ggcgcaattt aattctcaga accaatccaa cgtcatgccg ggaccagcac
     2461 agataatgag gggaccaact cctaacatgc aaggaaacat ggtgcaattc acaggacaga
     2521 tgtcaggaca gatgctgcct cagcaagggc ctgtgagcaa cagtccatct caggttatgg
     2581 ggattcaggg gcaggttctg cggccaccag gacccagccc acacatggcc cagcaacata
     2641 ctgatcctgc tactacagca aataatgatg tcaacttgtc tcagatgatg cctgatgtta
     2701 gcatgcaaca aaccagcatg gtccctccac atgtgcagag catgcaggga aacagtgctt
     2761 cgggaagcca cttctcaggc catggagtgt ctttcaatgc accattcggt ggtgcaccca
     2821 atggaactca gatgtcttgt ggtcaaaatc caggctttcc agtaaataag gatgtaacgt
     2881 taacaagccc attgttggtc aacttactgc aaagtgacat ttcagcaggt cattttggcg
     2941 taaacaataa acaaaataat accaacgcga ataaacagaa gaagaagaaa ccaccgcgga
     3001 agaagaaaaa ttgtcaccag gatctaaaca ccccagatag tcgtccagct ggtctagagg
     3061 aagttgatca acagtcatta cctggagaac aaggaatcaa tttggacaac acaggcccta
     3121 aactgccaga cttttcaaac cggccaccag gttatcctac acaaccagtt gaacagaggc
     3181 cactgcagca gatgcctcct caactcatgc agcatgtggc acccccacca cagccaccac
     3241 agcagcagcc acaaccacaa ctgcctcaac agcagccaca gccgcagcca ccaccaccta
     3301 gtcagccaca gtcgcagcag cagcagcagc agatgatgat gatgctcatg atgcagcaag
     3361 atcccaaatc cattaggctt ccggtctccc aaaatgtcca tcctccacgg ggtcctctga
     3421 acccagactc ccaaagagtg cccatgcaac agagtggcaa tgtgcctgtc atggttagtt
     3481 tgcaaggacc tgcctctgtg ccaccgtcac ctgataaaca aaggatgcca atgcctgtga
     3541 atactccgct gggaagtaat tcaagaaaga tggtatacca ggagagccca cagaattcca
     3601 gctcaccact aggagagatg ccctcacttc ctgaagctgg tggcagtgaa gtaccatctg
     3661 tttcaggagg cccaagtaac atgccctcgc atttagtagt ttctcagaat caattaatga
     3721 tgacaggacc caaacctgga ccatctcccc tttcagcaac tcaaggtgca actccccagc
     3781 agcctcctgt aaactccttg cctagttccc atggccacca ctttccaaat gtggctgcac
     3841 caacccaaac atctaggcct aaaacaccaa acagagccag ccccagaccc tattatcctc
     3901 agacgcccaa caaccgccct cctagcacag aaccttcaga aatcagtctc tctccagaaa
     3961 gactcaatgc ttccatagca ggactcttcc ctccacagat taatattcct ttacctccca
     4021 ggccaaactt aaataggggc tttgatcaac agggcttaaa tccaacaact ctgaaggcca
     4081 ttgggcaagc accttcaaat ctcactgtaa gtaatcctcc taactttgct gccccacaag
     4141 ctcataaatt agattctgtg gtggtgagtt ctggaaaaca gtctaatcct ggaacaacaa
     4201 aacgggcaag tccaagcaac agtcgcaggt ctagtccggg gtccagtaga aagactaccc
     4261 caagtcctgg aaggcaaaat tcaaaagccc ctaaacttac tctggcttct caaacaagca
     4321 caaccctgtt gcagaacatg gagctgccta gaaatgtgtt ggttggtccc actccacttg
     4381 ccaatccccc tttatctgga agctttccta acaataatgg gcttaattcc cagaatccca
     4441 ccgtgcctgc gcctgcagtg gggactgttg ttgaggataa caaagagagc ttgaatgttc
     4501 ctcaggacag tgattgccag aattcccagg ggaggaagga acaggtaaac actgagctga
     4561 aagcagtccc tatccaagaa gctaaaatgg ttgtccccga agatcagtcc aaaaaggatg
     4621 ggcaaccttt ggatcctaac aaactcccca gtgtagaaga gaacaaaact ttgatgtctc
     4681 ctgccatgag agaagcacca acatcactaa gccaacttct cgacaactct ggagctccta
     4741 atgtgaccat taaaccccct gggcttacag atctggaagt aacacctcca gcagtttcag
     4801 gagaggacct caaaaaagca tctgtcattc ccacactgca ggatccgtct tctaaagaac
     4861 cctctaattc tttaaactta cctcacagta acgagccgtg ttcaaccctt gcgcatccag
     4921 aattgagtga ggtcagctca aacattgcac caagcatccc tccagtaatg tcaagacctg
     4981 tcagctcttc ctccatttct actcccttac ccccaaacca aataactgta tttgttactt
     5041 ccaaccccat aaccacttca tctaacacat cagcagccct gccaactcac ttgcagtctg
     5101 cattgatgtc gacagtcgtc acgatgccca acgtgggtaa caaagttatg gtttctgagg
     5161 gacagtcagc tgctcaatct aatgcccggc ctcagttcat tacacctgtc tttatcaatt
     5221 catcttcaat aattcaggtt atgaaaggat cacagccaag cacaatccct gcaaccccat
     5281 tgacaaccaa cagtggcctg atgcctccct ctgtcgcagt tgttggacct ttacacatac
     5341 ctcagaacat aaaattttct tcagctcctg taacacctaa tgtcccctcc agtagtcctg
     5401 ctccaaatat acagacaggt cggccattgg tccttagctc acgagccact cctgttccgc
     5461 tgccttcccc tccttgtaca tcctctccag tcgtcgctcc taatccttct gtccagcaag
     5521 taaaagaatt aaatccagat gaggctagtc ctcagacgaa cacctcagca gaccagagca
     5581 ctctgccttc ttcacaacca accacagtag tttctcccct tttggccaat agtccaggct
     5641 cctctgccaa tcggcgaagc ccagtctcat ccagtaaggg caaaggaaaa gtggacaaaa
     5701 ttggccagat tttgctgacc aaagcttgta agaaagttac aggctctctg gagaaagggg
     5761 aagaacagta tggtgcagat ggagaaactg aaggcccagg gctagagacc acaactcctg
     5821 ggctaatggg aacagagcag tgctccacag agctggacag taaaacccca acaccctcag
     5881 cacccactct cctaaaaatg acctctagcc ccatgggccc aagctccacc tcaacaggac
     5941 ccatcttacc tggcggtgct cttcccacca gtgtacgctc tgtagtaacc acattggtac
     6001 cctctgagct catctccaca gcgccaacca caaaaggcaa tcatggtggg ataacatctg
     6061 agccacttgc aggtggccta gtggaggaga aggtgggatc ccatccagag cttctaccca
     6121 gcatagcccc ttcacagact ttagtcccaa aggaatctcc agccacagca ctgcagggct
     6181 ctgttggcag accagaactt gaggcaaatg ctgccatagc ctctggacaa agcagtgagc
     6241 caaaagagac agttgagaag tccaaaaccc ccagccgaag aaactctcga actgaggagc
     6301 caactatggc ttctgagaat gtggaaaatg gacatcgaaa aagatcttct cgacctgctt
     6361 cagcctccag ctctactaaa gatataactg gtgcagtgca atctaagcga agaaaatcca
     6421 agtaagcaag caggaagatg acttgatact tgtaaatgtt tgtgaatttt acaaagagca
     6481 attttcagct gtgacttttt aaatctattt ctgtacagtc agtcatttta ataacgtaat
     6541 gacgcggtcc ttttcctaat ccctaaaacc tgtctcataa agtgtaatgg ggagcagccc
     6601 ttttggtgtt gcaaaatgaa gttcaaggct tctaaaatgt tgccatgtat tgaaaggagc
     6661 taatgccatt gtaaatgtta ttagtttcac atttcttgag cagcctagag tacagggtga
     6721 acatttgtag atcttgtaat gatgtattgt gctgtggaag tactgtgtgt gaatagcagt
     6781 agtggggcaa aaagcaatct tgtcatttgg aaatgtaaat aattttatta tatagtgttt
     6841 tggatgtatt tgttgtagaa atggaccagt gaataaagag aatctaaggg tttgtacaat
     6901 gtgaaatact gaacgtgtta aataaatgtc tttgtcatag aa
//
