LOCUS       NM_001014082            2923 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus nicalin (Ncln), mRNA.
ACCESSION   NM_001014082 XM_234929
VERSION     NM_001014082.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Dettmer,U., Kuhn,P.H., Abou-Ajram,C., Lichtenthaler,S.F.,
            Kruger,M., Kremmer,E., Haass,C. and Haffner,C.
  TITLE     Transmembrane protein 147 (TMEM147) is a novel component of the
            Nicalin-NOMO protein complex
  JOURNAL   J Biol Chem 285 (34), 26174-26181 (2010)
   PUBMED   20538592
REFERENCE   2  (bases 1 to 2923)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083785.1.
            
            On Apr 20, 2005 this sequence version replaced XM_234929.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083785.1, SRR8487231.48847.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2923
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /note="nicalin"
                     /db_xref="GeneID:314648"
                     /db_xref="RGD:1309355"
     exon            1..265
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..1773
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /note="nicastrin-like protein; nicalin homolog; BOS
                     complex subunit NCLN"
                     /codon_start=1
                     /product="BOS complex subunit NCLN precursor"
                     /protein_id="NP_001014104.1"
                     /db_xref="GeneID:314648"
                     /db_xref="RGD:1309355"
                     /translation="MLEEAGEVLENVLKASCLPLGFIVFLPAVLLLVAPPLPAADAAH
                     EFTVYRMQQYDLQGQPYGTRNAVLNTEARTVDADVLSRRCVLMRLLDFSYEHYQKALR
                     QSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETVVPVYFAVEDEALLSIYEQTQ
                     AASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGLGGEDLPT
                     IVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASG
                     GGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGRGSHLRLHVSKPPREGTLQ
                     HVFLRELEMVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLSHLENHR
                     AGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQVQQE
                     QIDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYD
                     QLKQVMNAYRVKPAIFDLLLALCIGAYLGMAYTAVQHFHVLYKTVQRLLLKAKAQ"
     exon            266..456
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            457..601
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            602..696
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            697..777
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            778..881
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            882..970
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1289
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1290..1377
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1416
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1417..1580
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1634
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1713
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
     exon            1714..2891
                     /gene="Ncln"
                     /gene_synonym="RGD1309355"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgctgagctg agtccgcgga accgcggtcg ttccttgtcg ccgtccgccg ccgccgcctt
       61 tgcggcctgc cgcccaccgg gatgctggag gaagcgggcg aggtgctcga gaacgtgctg
      121 aaggcgtcgt gcctgccgct cggctttatc gtcttcttgc ccgctgtgct gctgctcgtg
      181 gcgccgccgc tgcccgccgc cgacgccgcg cacgagttca ccgtgtaccg catgcagcag
      241 tacgacctgc agggccagcc atacggcaca cggaatgctg tactcaacac agaggcgcgc
      301 acagtggacg cggatgtgct gagccgccgc tgcgtgctca tgcggctcct ggatttttcc
      361 tatgagcact atcagaaggc cctgcggcag tcggcaggtg ctgtggtcat catcctgccc
      421 cgtgccatgg ctgcggtgcc tcaggatgtt gtacggcaat tcatggagat cgagcctgag
      481 atgctggcca tggagactgt ggtccccgtg tactttgctg tggaggatga ggccctgctg
      541 tccatctatg agcagaccca ggctgcctct gcctcccagg gctctgcctc tgcggccgaa
      601 gtactgctgc acacagccac agccaatggc ttccagatgg tgaccagtgg agcccagagc
      661 caggcagtga gtgactggct catcaccagt gtggaggggc ggctgacagg gctgggaggg
      721 gaggacctcc ccaccatcgt catcgtagct cactacgacg cctttggggt agctccatgg
      781 ctgtcactgg gtgcagactc gaacgggagt ggcatctctg tactgctgga gctggctcgc
      841 ctcttctcac gcctctacac gtacaagcgc actcatgcag cgtacaacct tctgttcttc
      901 gcatctggag ggggcaagtt caactaccag ggcaccaagc gctggcttga ggacagcctg
      961 gatcacacag actccagcct cctgcaggac aacgtagcct ttgttctatg cctggacacc
     1021 gtgggacgtg gcagccacct gcggctgcat gtgtccaagc ctccgcggga ggggacactg
     1081 cagcatgtct tcctgcgcga gctggagatg gtggctgcgc accagttccc tgacgtcagc
     1141 ttctccatgg tacacaagaa aatcaatcta gcagatgacg tgctggcctg ggagcatgag
     1201 cgctttgcca tccggaggct gcccgccttc acgctgtccc atctggagaa ccaccgcgca
     1261 gggccccgca gcagcatcat ggatgtgcgg tcccgggtgg actccaagac cctgactcgg
     1321 aacacaagga tcatcgctga ggccctaaca agggtcatct acaacctgac agagaagggg
     1381 acgcccccag acatgccagt gttcacggag cagatgcagg tccagcagga gcagatagac
     1441 tcagtcatgg actggctcac caaccagccc cgggccgccc aactgctgga caaggacggg
     1501 acgttcctga gtacactgga gcacttcctg agccgctacc tgaaggacgt gcggcagcac
     1561 cacgtgaagg ccgacaagcg ggaccctgag tttgtcttct atgaccagct gaagcaagtg
     1621 atgaacgctt acagggtcaa gccagccatc tttgacctgc tgctggcctt gtgcattggg
     1681 gcgtacctgg gcatggcata cacagccgtc cagcacttcc atgtgctgta caagacggtg
     1741 cagagactgc tgctcaaggc caaggcacag tgacagtggc catgcacagg tggcccagga
     1801 ggtcctagcc cacgcaccca cagcagccag actgaaccac agagggtttg gatgggtcac
     1861 taggatgcag ggacacctct ccctgtccat ttctttgtcc ctggaggaga gccccgcccg
     1921 cctgcagacg agcccactgg gatggaatga tgacccgggc cacatgcact gaagggccgc
     1981 acactgctgt tggcctcccc agtggctggg tcccagaagc ctgtctctgc agttccccag
     2041 aggcagccac cgtcagcctg cctcgcccca gcactggcca gcacccgaca atgtctccct
     2101 gatgctcctc ctcatacccc tgtcccgcct gttgtcacct ctgccaccat tgaacccacc
     2161 tggtccccca gctggatctg agccacctga ggttctggcc cctcctgcaa gcgtcccttc
     2221 gctcagtccc agtgctggtg actgagcagg agttggccct ggtctggagt gtgtgcagtt
     2281 ctgaggtctc cccaccttct acactgcccc cccagcctca gtttccctac ctgagataca
     2341 ttctgggaag tccagtcctc tgtcatagtg tctgatggga caaccaggcc tagcacagcc
     2401 ctggatgtcc ccaacaggat ggccttggga gggggacacc ggtgctgatg gttgacctca
     2461 gggaccccac agtgaattga ttcaattgat tcaatagcaa tatgacccag gaggtgtcag
     2521 gcggggcagc ggaggccatc tgaagaccag ctgcttgcat ccctctagca cctgctgagg
     2581 cctggctccc cccacccacc gtaggctgcc tcggttcagc agtggtggct gccaccctgg
     2641 tggcactcgt gtcataggac gaggggggtc agcctcctgc cctggccctg ggcactctcg
     2701 ttcccctcac tactcttaac ctggcagctg gttacgggtc tgaggccagt gccacctgcc
     2761 actgaagaag tacacagggc atgtgccacc tccctctgtc ccgatgggtc atggggatgg
     2821 attggcccct tggggtggcc gtgggtctgc agttggtggg ttacaaaata aaagccatat
     2881 tgaaggaccg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
