LOCUS       NM_001271369            5512 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus NCK-associated protein 5-like (Nckap5l), mRNA.
ACCESSION   NM_001271369 XM_003754351 XM_039079327 XM_235649
VERSION     NM_001271369.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5512)
  AUTHORS   Mori Y, Inoue Y, Tanaka S, Doda S, Yamanaka S, Fukuchi H and Terada
            Y.
  TITLE     Cep169, a Novel Microtubule Plus-End-Tracking Centrosomal Protein,
            Binds to CDK5RAP2 and Regulates Microtubule Stability
  JOURNAL   PLoS One 10 (10), e0140968 (2015)
   PUBMED   26485573
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000187.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001271369.4.
            
            On or before Dec 15, 2022 this sequence version replaced
            XM_039079327.1, NM_001271369.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JACYVU010000187.1  17326072-17326170   c
            100-142             JACYVU010000187.1  17303565-17303607   c
            143-292             JACYVU010000187.1  17301726-17301875   c
            293-361             JACYVU010000187.1  17301243-17301311   c
            362-400             JACYVU010000187.1  17301120-17301158   c
            401-520             JACYVU010000187.1  17300456-17300575   c
            521-634             JACYVU010000187.1  17297135-17297248   c
            635-3255            JACYVU010000187.1  17293520-17296140   c
            3256-3415           JACYVU010000187.1  17292097-17292256   c
            3416-3497           JACYVU010000187.1  17291845-17291926   c
            3498-3806           JACYVU010000187.1  17291248-17291556   c
            3807-3949           JACYVU010000187.1  17291017-17291159   c
            3950-5512           JACYVU010000187.1  17289218-17290780   c
FEATURES             Location/Qualifiers
     source          1..5512
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..5512
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /note="NCK-associated protein 5-like"
                     /db_xref="GeneID:315297"
                     /db_xref="RGD:1561571"
     exon            1..99
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            100..142
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            143..292
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..4159
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /codon_start=1
                     /product="nck-associated protein 5-like"
                     /protein_id="NP_001258298.1"
                     /db_xref="GeneID:315297"
                     /db_xref="RGD:1561571"
                     /translation="MDQPAGGTGNLRPASGEDSSMELGTCQELLHRLRELEAENSALA
                     QANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSTLLQQ
                     KLQLTTSSLPQIPLTPLQPPSERPASPSPNAAEGPATTLPLGHCAGPREVCWEQQLRP
                     GGPGPPATPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWRPTGQGPGSP
                     EPINGELCGPPQPEPSPWAPYLLLGPGSLGALLHWERALGGPGEEEGIRQPWASSRAP
                     LPAQGPGAGPHCAPGSSSSSSSDEAGDPNEAPSPDTLLGVLARKQLNLGQLLGDTEIS
                     LPAFLAGATGPLSGDHPHPSAGKLSSPDPGAPQVSKSKGLPKSAWGGSAPEASRLGFG
                     ATSEGQGPLPFLSMFMGAGDAPLGSRPGHSHSSSQVKSKLQIGLPSPGDAQGPLLPSP
                     ARGLKFLKLPPASEKVPSPGGPQLSPQLPRSSRIPCRNSGSDGSPSPLLARRGLGGGE
                     LSPEGAQGLPSSPLPCSANPDSAQLRTSQSAVSTTLSAGPVVSPCFENILDLSRGTFR
                     GSSTEPPPSPLQVPTYPQLTLEVPQTHEVLRSPGAPSPGLPGPCPYSSPQEKSVDRAG
                     SESPHLSRRTPCGSSKKPGQGSGRRPGDPSHTPLRDRLAALGKLKTGPEGPLGPEKNG
                     VPARSNTEKAKAPVRSGECPGDVSPSTRPLEQPEAKGIFRGAVALGTSSLKQQEPGLT
                     DLGARVYSSHSMGARVDLEPISPRSCLTKVELAKSRLAGALCPQMPRTPAKVPTSAPS
                     LGKPKSPHSSPTKLPSKSPTKVVPRPVAPLGTKEPPKPDKVKGPPWADCGTTVGQPTS
                     PVPGPVDQSPGPEGPVPHSAIEEKVMKGIEENVLRLQGQERTPGSEAKHRNASSIASW
                     FGLKKSKLPALNRRTEAAKNKEGAGGGSPLRKEVKTEAWKLEAESLNISKLMAKAEDL
                     RRALEEEKAYLSRARPRPGGPATVPSPSVGQPQGQLTGMYQGADTFMQQLLNRVDGKD
                     LPPESWREPKPEYGDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKPGKPISEPGRREA
                     MPPEDNLAEPVSTAHFTACGSLTRTLDSGIGTFPPPDHSSSGTPSKNLPKTKSFRLDP
                     PPGAPAARPPGLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAPPGHRSHQ
                     TCPDDPCEDPGPPPPVQLAKNWTFPNTRTSGSTSDPFLCPPRQLEGLPRTAMALPVDR
                     KQSLDPSRTSMPQGPAFGGSRTPSTSDMGEEGRVASGGAPGLETSESLSDSLYDSLSS
                     CGSQG"
     exon            293..361
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            362..400
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            401..520
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            521..634
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            635..3255
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            3256..3415
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            3416..3497
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            3498..3806
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            3807..3949
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
     exon            3950..5512
                     /gene="Nckap5l"
                     /gene_synonym="RGD1561571"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtacccccc tttttttgcc cccccccacg cccgcccgcc cccgagatgc ggccatggac
       61 cctgcggacc aagccagccg aacccagcac ctgatttcgg tgaggtgacg cctctggctg
      121 ccagcgtgaa cgtgccagcc tgcctgccag gtcttgttcc cagaccctga ctcctaaggc
      181 catggaccag ccggccggag gcactggaaa cctaaggcca gcgtctggcg aagacagcag
      241 catggagctc ggcacctgcc aggagctgct gcaccgactt cgggaactgg aggcagagaa
      301 ctcggcactt gcacaggcta atgagaacca gcgggagact tacgaacgct gtctggatga
      361 ggttgccaac cacgtggtgc aggcgctact gaaccagaag gacctgcggg aggagtgcat
      421 caagctgaag aagagggtgt ttgacctgga gcggcagaat cagatgctca gcacactgct
      481 gcagcagaag ctacagctca cgaccagctc cctccctcag atcccactca ccccactcca
      541 gccaccatca gaacgaccag cctccccgtc cccaaacgct gctgagggac cagccaccac
      601 tctgccttta ggacactgtg ctgggccaag agaggtgtgt tgggagcagc agttacgccc
      661 aggcggccca ggccccccgg ccactccacc cccagcgctg gatgccctgt ccccatttct
      721 tcggaagaaa gctcagattt tagaggtcct gcgagccttg gaagagactg accctctgct
      781 tttgtgctca cccgccaccc cctggagacc cacaggccaa ggccctggat ccccagagcc
      841 catcaatggc gagctctgtg gcccaccaca gcctgaaccc tcaccctggg caccctacct
      901 actgctcggt cctgggagcc taggggcact gctgcactgg gagcgtgcct tggggggccc
      961 tggggaagaa gaaggcatca ggcaaccctg ggcttctagc agggccccac tgccagccca
     1021 gggccccggc gctggcccac actgtgcccc gggcagcagc tcctcgtcat cttctgatga
     1081 agcaggagac cccaatgaag cccccagccc cgacaccctg cttggtgtcc tggcccgcaa
     1141 gcagttaaat ctgggccaac tccttgggga cacagagatt tccctcccag ctttcctggc
     1201 tggggctact ggccccctca gcggcgacca cccccaccca agtgctggga agctgtcctc
     1261 accagatcca ggagccccac aggtgtccaa gtccaaaggc ctcccaaagt cagcttgggg
     1321 tggaagtgcc ccagaggcca gcaggctggg ctttggtgct acctcagagg gccaggggcc
     1381 ccttcccttc ctcagcatgt tcatgggtgc aggggacgcc ccgctgggct cccggcctgg
     1441 ccattcccac tcctcttctc aggtgaaaag caagctccag attgggctcc cttcccccgg
     1501 ggacgcccag ggacccctcc tgccctctcc agccagaggt ctcaagtttc tcaagctgcc
     1561 tccagcctca gagaaggtcc ctagccctgg aggtccccag ctcagccctc agcttccccg
     1621 gagttctcga atcccttgtc gcaacagtgg ctcagatggc agcccctccc cactgctggc
     1681 acgaaggggt ctgggtggag gggagctttc cccagagggg gcacagggcc tgcccagcag
     1741 ccctttaccc tgctctgcaa acccagactc tgcgcaactc agaacctctc agtcggctgt
     1801 gtccactaca ctgtctgcag ggccagtagt gtctccctgc tttgaaaaca tcctggacct
     1861 ttcccggggc acctttaggg gttcttccac agagccacct ccatccccac tgcaggtgcc
     1921 cacctaccca caactgactc tcgaggtacc ccagacccat gaggtcctca ggagccctgg
     1981 ggcccccagc cctggcctcc cgggaccctg tccctacagc agcccccagg agaagagtgt
     2041 ggacagggca ggctccgagt ctccccatct cagccgcagg accccatgtg gctcatccaa
     2101 gaagcctggc cagggatcag ggcgacgacc tggtgatcct agccacacac ctctgcgaga
     2161 cagattggca gcacttggaa aactgaagac gggcccagag gggcctctgg gtccagaaaa
     2221 gaacggagtg ccagcccggt ctaacacaga gaaggccaag gcaccagtgc ggtcaggcga
     2281 gtgtcctgga gatgtgtctc ccagcacgag acctctcgaa cagccagaag ctaagggtat
     2341 ctttcgggga gcagtagcct tgggcacaag cagcctgaag cagcaggaac ctggacttac
     2401 tgatcttggt gcccgagtct attcctccca ctccatggga gctcgagtag acctggagcc
     2461 catctcacca aggagctgcc tcaccaaagt ggagctagcc aagagtcggc tagcaggggc
     2521 tctgtgtccc cagatgcccc gcacacctgc aaaagtgcca acctcagccc ctagcctggg
     2581 caaacccaaa agccctcaca gcagcccaac aaagctgccc tccaagtcac ccaccaaggt
     2641 ggtgccccgc cctgtggcac ccttaggcac caaggagccc cccaagcctg acaaagtgaa
     2701 gggcccacct tgggcagatt gtggcaccac ggttggccag cctacatccc cagtacctgg
     2761 tccggtcgac cagagcccgg gcccagaagg gccagtacca cactcagcca ttgaggagaa
     2821 ggtgatgaag ggtattgagg agaacgtgct gcgccttcaa ggtcaggagc ggactccggg
     2881 ctccgaagcc aagcaccgca atgccagcag cattgccagc tggttcggcc tcaaaaagag
     2941 caagctacca gctctgaacc gccgcacaga ggccgccaaa aacaaggaag gggccggtgg
     3001 gggctccccg ctccggaaag aagtcaagac agaagcctgg aagctggagg ctgagagcct
     3061 caacatttcc aagctgatgg cgaaggcaga agacctgcgc agagcgctgg aggaagagaa
     3121 ggcatatctg agcagagccc gcccacggcc tgggggccca gccacagtgc ccagccccag
     3181 tgtggggcag ccacaaggcc agctaaccgg catgtatcag ggtgcagaca cattcatgca
     3241 acagctactg aacagggtgg atggcaagga cctgcccccc gagagctggc gggagcccaa
     3301 gcctgagtat ggggatttcc agccagtgtc tagtgacccc aagagcccct ggcctgcctg
     3361 tgggcctcgg aatggcctgg taggcccgct gcagggctgc ggaaaaccgg ggaagcccat
     3421 cagtgagccg ggtaggcggg aagcgatgcc cccagaagac aacctggccg agccagtgtc
     3481 caccgcgcac ttcacagcct gtggctcctt gactcggacc ttggacagtg gcattgggac
     3541 cttcccaccc ccagatcaca gcagcagtgg aacccccagc aagaacctcc ccaagaccaa
     3601 gtcgtttcgt ctggatcccc cgccaggggc gcccgcagct cggcctccag gcctcaccaa
     3661 agtcccccgc cgtgcccaca cgctagaacg ggaggtgcca ggcatagaag agctgctggt
     3721 gagtgggcgg caccccagca tgcccgcctt tcctgccctg ctcactgctc ctccaggaca
     3781 ccgcagccac cagacctgtc ctgacgatcc ctgtgaagac ccaggccctc ccccgcctgt
     3841 ccagctggcc aagaactgga cctttcccaa caccagaaca tctggcagca ccagtgaccc
     3901 cttcctgtgc ccaccccgac aactggaggg actgcctagg accgccatgg ccctgcccgt
     3961 ggaccgaaaa cagagcctgg atcccagccg cacatctatg cctcagggcc cagcatttgg
     4021 aggcagccgt acccccagca cgtcagacat gggcgaggaa ggcagagtgg ccagtggggg
     4081 cgctcccggg ctggagacct cagaatccct aagtgactcc ctctatgact cgctgtcctc
     4141 ctgcgggagt cagggttgag ggactgcacc cactgcagct cctctggagc tagggacccc
     4201 agaggacctg cctccgtgct ccacgccttg gagccgggga ggcttgatcc gaagggacca
     4261 aggagaaggt gggtgagaag gcgacagggg tccctggcat atgccaccgc tgctgtgaga
     4321 caaccatgcc cagctcaggg agagacctca cccccttcac tcctcagagt aaggctctgc
     4381 tctaagggat gggggctcca ggctgcttag tcccagctcc ctcttcaggc cgagccatct
     4441 ttcggtgctg ggcttcctgc ccaccagctg tgccacctct gcccaacctg gctgcaaccc
     4501 tgccccaaag cccccatggg gctgattttg gaagccccag gcttacggag tttggggagt
     4561 gagggggaca agttgccttc tctctctgcc ctggtcctcc ctgctgtctg aatggtgctg
     4621 cctcctttcc ccacatcgtg gggtctgtct gtctgtcttc atctttgttt atatatatat
     4681 atatatatat atatatatat atatatatat atatatatat atatatatat atatatatat
     4741 ataaaagcgc ctggccaagt ccccacgccc gacccgcact gcggttaatt tatctgttgt
     4801 tgaatggcag cctctgctcc tgcggtatcc ctaataaaat atggaggcct ctccccaccg
     4861 cgactgttgt atggcaacgc caccatatgc tgtcttctct ataacccttc aggtggatgg
     4921 gtgtgcactt tcagggcttt gtgaggctgt gtgccctgga ggagatggct ggagacccct
     4981 aggaggtgac ttacagggac ctgcttagat ctaagattgg gagaatgtcc ctgacttggt
     5041 ggggcacaag gccatgcagc cttggagaga aaatgggaga agaggtctgt gatcatgcac
     5101 tcaagcccct ccgtgtgcca gataggggac aggccagttc agagcagtct cactggctta
     5161 tgtgaaggcg tagaacaagt caatgactac ccaggctgaa agggaagaag cctggtagga
     5221 atcccctcac acctgcacac catgcagtct ctctccccat gtccccatgc tttataaacc
     5281 atctctgtat ggcttgggag cactagaaga agccaaggat atttatcacc agagctggcg
     5341 ttccaaataa ccgtatcact acagaccttg gttttcctca tctgtatatt agattgtgga
     5401 aggccaggtg gtcctgtcag cagccttctc cttcatgctc tgtgctccgt cccacatctg
     5461 gcctctgcct tcttccttca gctgaggtca tcattaaaga aattaacaag gg
//
