LOCUS       NM_001134506            1362 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus NCCRP1, F-box associated domain containing
            (Nccrp1), mRNA.
ACCESSION   NM_001134506 XM_001078356 XM_003748805 XM_017590999 XM_218387
VERSION     NM_001134506.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Kallio,H., Tolvanen,M., Janis,J., Pan,P.W., Laurila,E.,
            Kallioniemi,A., Kilpinen,S., Tuominen,V.J., Isola,J., Valjakka,J.,
            Pastorekova,S., Pastorek,J. and Parkkila,S.
  TITLE     Characterization of non-specific cytotoxic cell receptor protein 1:
            a new member of the lectin-type subfamily of F-box proteins
  JOURNAL   PLoS One 6 (11), e27152 (2011)
   PUBMED   22087255
REFERENCE   2  (bases 1 to 1362)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   3  (bases 1 to 1362)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Aug 20, 2020 this sequence version replaced
            XM_017590999.1, NM_001134506.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.2149.1,
                                           SRR26643294.1646.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN13663593, SAMN13663594
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               JAXUCZ010000001.1  92965827-92966155   c
            330-392             JAXUCZ010000001.1  92965397-92965459   c
            393-444             JAXUCZ010000001.1  92965263-92965314   c
            445-540             JAXUCZ010000001.1  92964221-92964316   c
            541-679             JAXUCZ010000001.1  92963429-92963567   c
            680-1362            JAXUCZ010000001.1  92962618-92963300   c
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1362
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /note="NCCRP1, F-box associated domain containing"
                     /db_xref="GeneID:292755"
                     /db_xref="RGD:1305932"
     exon            1..329
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..820
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /note="non-specific cytotoxic cell receptor protein 1
                     homolog"
                     /codon_start=1
                     /product="F-box only protein 50"
                     /protein_id="NP_001127978.2"
                     /db_xref="GeneID:292755"
                     /db_xref="RGD:1305932"
                     /translation="MEKIPDRDALSGRMEAEGSQNSEELPPHPQSPPPPPSPRSPTSP
                     ETPELPQPNAPTEFEARQLLVEEWGPVSGKLELPPSISWKLLFLERPLYRNLLNSPNP
                     EGINIYQPAPPTGPTRKPLKELGNFRGWYITTENLQGPLSWTVKEQCVNLLAKKLWEE
                     LLDDEQPDITIMDWFEDSRLDQCVYELHVWLLAADRRTVIAQHHVAPRTNGRGPPGRW
                     VQVSHVFRQYGPGVRFVHFQHKTKNRMEPGGLRRTRVTDSSVSVQLRE"
     exon            330..392
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
     exon            393..444
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
     exon            445..540
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
     exon            541..679
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
     exon            680..1362
                     /gene="Nccrp1"
                     /gene_synonym="RGD1305932"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcgtccaa accttaggga tggagaagat accggacaga gacgcgctca gtggcaggat
       61 ggaagccgag gggtcccaga actccgagga gctgccaccg catcctcagt ccccaccacc
      121 acctccgtcc ccaaggtctc ccacgtcccc ggagacccct gagcttcctc agcccaatgc
      181 accgactgag tttgaagcca ggcagctgct ggtagaagaa tggggacccg tgagcgggaa
      241 gctggagctg cccccgagca tcagctggaa gctgctgttc ctggagcggc cactctaccg
      301 caacctcctc aactcaccca acccggaagg cattaacatc taccagccgg cgccccctac
      361 gggtcccacc cggaaacctc tgaaggagct gggtaatttc cgtggatggt acattactac
      421 tgagaacctc cagggacccc tcagctggac agtgaaggag caatgtgtga acctgctggc
      481 caagaagctg tgggaggagc tgctggatga cgaacagcct gacatcacca tcatggactg
      541 gttcgaggac agccgcctag accagtgtgt ttatgagctg catgtctggc tgctagcagc
      601 tgaccgccgc accgtcattg cccagcacca cgtggcccct cggaccaatg ggagaggacc
      661 ccctggccgc tgggttcagg tgtcccacgt cttccgccag tacggccccg gagtgcgttt
      721 tgtccacttc cagcacaaga cgaagaaccg catggagcct gggggactgc ggaggacaag
      781 ggtgaccgac tcctccgtgt ctgtgcagct ccgggagtga cctctaacca ggctctccag
      841 gtctgacgtg atcaatcctt tggaagtccc tgatgttcgt cacctccgag cccttggcat
      901 gtctttgagg cttcctggct tctgcccttt tatgtgtgtg cttagcaata gtctgacccc
      961 tcctcacccc cgaaccctcc tcaccccaac ccctcattcg cccgatcctc ctcatgctcc
     1021 ttacccctcc tcaccccctg actcccctta ccttctgcct gacccctctt cagctccctg
     1081 acctcctcat ccttctgacc tttcctctcc ttcatgaccc ttacacgccc cctcctactt
     1141 ctccttcacc catggccccg cctgctctgc ccagctcctt cctaacaatt tctccccgct
     1201 caggtctctc agatcctgtt tggcccccga ggtttccttt gacatctcct tgcctccttg
     1261 aatgtgtgac tctgggcagg ggccatcccc tgcacatcaa ctgcttgtct cacatggctg
     1321 aataaacctt tggagagaga ctctaagaac acagagctct aa
//
