LOCUS       NM_001108281            2880 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus nuclear cap binding subunit 3 (Ncbp3), mRNA.
ACCESSION   NM_001108281 XM_001080268 XM_340840
VERSION     NM_001108281.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Gebhardt A, Habjan M, Benda C, Meiler A, Haas DA, Hein MY, Mann A,
            Mann M, Habermann B and Pichlmair A.
  TITLE     mRNA export through an additional cap-binding complex consisting of
            NCBP1 and NCBP3
  JOURNAL   Nat Commun 6, 8192 (2015)
   PUBMED   26382858
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 2880)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001080268.1, XM_340840.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..2880
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /note="nuclear cap binding subunit 3"
                     /db_xref="GeneID:360563"
                     /db_xref="RGD:1308139"
     exon            1..205
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..1870
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /note="uncharacterized protein C17orf85 homolog"
                     /codon_start=1
                     /product="nuclear cap-binding protein subunit 3"
                     /protein_id="NP_001101751.1"
                     /db_xref="GeneID:360563"
                     /db_xref="RGD:1308139"
                     /translation="MAAVRGLRVSVKAEAPAGPALGLPSPEVESGLERGEPEPMEVEE
                     GELEIVPVRRSLKELLPDTSRRYENKAGSFITGIDVTSKEAIEKKEQRAKRFHFRAEV
                     NLAQRNVALDRDMMKKAIPKVRLETIYICGVDEMSTQDIFSYFKEYPPAHIEWLDDTS
                     CNVVWLDEMTATRALINMSSLPAQDKIRSREASEDKSSEKDKKDKQEDSSDDDETEEG
                     EVEDENSSDVELDTLSQVEEESLLRNDLRPANKLAKGNRLFMRFATKDDKKELGAARR
                     SQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSG
                     LVNVPEEPIEEEEEEEQEEEDQDMDADDRVVVEYHEELPALKQPRERSMSRRSSASSS
                     DSDEMDYDLELRMISTPSPKKSMKMTMYADEVESQLKSIRNPMRSDSISTSNIKNRIG
                     NKLPPEKFADVRHLLEEKRQHSCPRPAGGSTKPDIRQRLGKRPYSPEKAFSSNQVVRR
                     EPSSDVHSRLGVPRQDVKGLYSDTRERKSGGLWTRLGSTPKTKEKNTKKVDHRASGTE
                     EDDSELQRAWGALIKEKEQSRQKKSRLDSLPSLQIEVSRESSSGSEAES"
     exon            206..271
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            272..377
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            378..503
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            504..632
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            633..709
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            710..818
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            819..918
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1022
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1317
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1472
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            1473..1634
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..2880
                     /gene="Ncbp3"
                     /gene_synonym="RGD1308139"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggtgcggc cggctggcag ctatggcggc cgttcgcggc ctgcgagtgt ctgtgaaagc
       61 ggaggccccc gctgggccgg ctttggggct tccgtcgccc gaggtggaat ccggtttgga
      121 gcgtggcgag ccggaaccca tggaggttga agaaggcgag ctggaaatcg tgccggtgcg
      181 gcgctcccta aaggaactgc tcccggacac aagcagaaga tatgaaaaca aggccggcag
      241 cttcatcact gggatcgatg tcacctccaa ggaagcaatt gaaaagaaag aacagcgagc
      301 caaacgcttc cactttcgag cagaagtaaa tcttgcccag aggaatgtag ccttggacag
      361 agacatgatg aagaaagcaa tccccaaggt aagactggag acgatctaca tttgtggcgt
      421 ggatgagatg agtacccagg acatcttttc ctactttaag gagtaccctc cagctcacat
      481 tgagtggctg gatgacacct cctgtaatgt ggtttggcta gatgagatga cagccacacg
      541 agctctcatc aatatgagtt ctctgcctgc ccaggataag ataagaagca gagaagccag
      601 tgaagacaag tcgtctgaga aagacaagaa agacaagcag gaagacagtt cagatgacga
      661 cgagactgaa gaaggagaag ttgaagatga gaattcaagt gatgtagagt tggacacatt
      721 gtctcaggta gaagaagagt ctctgttaag aaatgacctt cgtccagcta acaaactcgc
      781 taaaggaaac agactgttca tgagatttgc tacgaaagat gacaaaaagg aacttggagc
      841 agccagaaga agtcaatatt acatgaaata tggaaatcca aattatggag gcatgaaagg
      901 aattctgagc aattcatgga agcgaagata tcattcccgt cgcattcagc gggatgtgat
      961 caagaagaga gccctgattg gggatgacgt tggcttgacg tcgtataaac accgacattc
     1021 cggattagta aacgttcctg aggaacccat tgaggaagag gaggaggaag agcaggagga
     1081 agaggaccag gacatggatg ctgatgacag agtcgtggtg gagtaccatg aggagctccc
     1141 agctctcaag cagccccgtg agcggagcat gtctaggcga tccagtgcga gcagctccga
     1201 ctccgacgag atggactatg atctggaact gaggatgatc tccactccct ccccaaagaa
     1261 aagcatgaag atgaccatgt atgcagatga agttgagtct cagttgaaaa gcattaggaa
     1321 tcccatgagg tcagatagta tatccacaag caatataaaa aaccgaattg gtaacaaatt
     1381 gcctcctgag aagtttgcag atgtccggca ccttttagag gaaaagcgtc agcattcctg
     1441 tccacggcca gcaggcggca gtactaaacc agatattcgc cagcggttag gaaaaagacc
     1501 gtattctcca gaaaaggctt ttagcagtaa ccaggtggtc cggagagagc cgtcttcgga
     1561 tgtacatagt aggctaggtg ttcccaggca agatgttaaa ggcctctact ctgatactcg
     1621 ggagaggaag tcaggtggtt tatggactcg cttaggatct acacccaaga ccaaagaaaa
     1681 gaacacgaag aaagtggatc atagggcatc tgggactgag gaagatgact cagagcttca
     1741 gagggcatgg ggtgctctga ttaaagagaa agaacagtct cgacagaaga agagtcggct
     1801 ggatagcttg ccgtcactcc agatcgaagt cagccgggaa agtagctctg gttcagaggc
     1861 agagtcctga tgccctggcc ttggcaactg cccttaatcg gacgttcttt tatggatggg
     1921 gcgtgcagta ggaacctccc ttgcaggagt tggcgccctt cccttctgca ccctgaacac
     1981 ttactgtcct agtaggacag ctgaagagtg tgacgagttt ggaaggtgtc tctgtcttgt
     2041 gctgcagagt tacagttctg ggccctcgag tcttttcccc accacccaca agctttaccc
     2101 tcggagttaa aggcagccct ccagattttg tagacgtttt cttaatattt ttaacattgt
     2161 gtcttttaaa agaaatgttt tacacagtca tccaaagagc agagaactga acttctcact
     2221 gttgccttgg ccctgacagc tcttgccagc accctttccc aagaaaagtc agttctcagg
     2281 tgcttattgg acagtctttg agggggaaga tgggggaagc tgccagcttg gccttccagg
     2341 accttaggtg gtggctccga gtctcacaga cctgacgtga gatgcatctg ccctcagggt
     2401 agataggtat gcagcagcaa tcagaagtgc tgctgtctcc caggggtttc tttcagggcc
     2461 ttttcctggc tggtagcctg atataaagat caagttcagt gctgtaggac atctagggac
     2521 aaacaactgt gacttctgga tttggagttg atttctgtgc ttaggggtgg ggtcttgtgt
     2581 tgatgttgaa caatttttaa gtctgtatta tgtttaaaaa ctattaatga cttaaaagtt
     2641 taaattttta atttttatat gtggatattc ctcctgttgg ctaaggggaa gctcaagtgg
     2701 tgtcttttgt gttgttaaat atacattata tactttggaa gaaggcaaag aaaggagtct
     2761 cattattttg aatgatacca attgtatggt ctgttgtatt tgagttcaac ttgctttgtg
     2821 gcgactatgt gatgggttct tgttcattaa cactttctag aagtgacacc ctgagaattc
//
