LOCUS       NM_001109525            1587 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus nuclear cap binding protein subunit 2 (Ncbp2),
            mRNA.
ACCESSION   NM_001109525 XM_001064395 XM_001064452 XM_001064512 XM_001064621
VERSION     NM_001109525.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Gebhardt,A., Habjan,M., Benda,C., Meiler,A., Haas,D.A., Hein,M.Y.,
            Mann,A., Mann,M., Habermann,B. and Pichlmair,A.
  TITLE     mRNA export through an additional cap-binding complex consisting of
            NCBP1 and NCBP3
  JOURNAL   Nat Commun 6, 8192 (2015)
   PUBMED   26382858
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Gonatopoulos-Pournatzis,T. and Cowling,V.H.
  TITLE     Cap-binding complex (CBC)
  JOURNAL   Biochem J 457 (2), 231-242 (2014)
   PUBMED   24354960
  REMARK    Review article
            Erratum:[Biochem J. 2014 Feb 15;458(1):185]
REFERENCE   3  (bases 1 to 1587)
  AUTHORS   Pabis,M., Neufeld,N., Steiner,M.C., Bojic,T., Shav-Tal,Y. and
            Neugebauer,K.M.
  TITLE     The nuclear cap-binding complex interacts with the U4/U6.U5
            tri-snRNP and promotes spliceosome assembly in mammalian cells
  JOURNAL   RNA 19 (8), 1054-1063 (2013)
   PUBMED   23793891
REFERENCE   4  (bases 1 to 1587)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 1587)
  AUTHORS   Lundby,A., Secher,A., Lage,K., Nordsborg,N.B., Dmytriyev,A.,
            Lundby,C. and Olsen,J.V.
  TITLE     Quantitative maps of protein phosphorylation sites across 14
            different rat organs and tissues
  JOURNAL   Nat Commun 3, 876 (2012)
   PUBMED   22673903
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1587)
  AUTHORS   Wilson,K.F., Fortes,P., Singh,U.S., Ohno,M., Mattaj,I.W. and
            Cerione,R.A.
  TITLE     The nuclear cap-binding complex is a novel target of growth factor
            receptor-coupled signal transduction
  JOURNAL   J Biol Chem 274 (7), 4166-4173 (1999)
   PUBMED   9933612
REFERENCE   7  (bases 1 to 1587)
  AUTHORS   Flaherty,S.M., Fortes,P., Izaurralde,E., Mattaj,I.W. and
            Gilmartin,G.M.
  TITLE     Participation of the nuclear cap binding complex in pre-mRNA 3'
            processing
  JOURNAL   Proc Natl Acad Sci U S A 94 (22), 11893-11898 (1997)
   PUBMED   9342333
REFERENCE   8  (bases 1 to 1587)
  AUTHORS   Visa,N., Izaurralde,E., Ferreira,J., Daneholt,B. and Mattaj,I.W.
  TITLE     A nuclear cap-binding complex binds Balbiani ring pre-mRNA
            cotranscriptionally and accompanies the ribonucleoprotein particle
            during nuclear export
  JOURNAL   J Cell Biol 133 (1), 5-14 (1996)
   PUBMED   8601613
REFERENCE   9  (bases 1 to 1587)
  AUTHORS   Kataoka,N., Ohno,M., Moda,I. and Shimura,Y.
  TITLE     Identification of the factors that interact with NCBP, an 80 kDa
            nuclear cap binding protein
  JOURNAL   Nucleic Acids Res 23 (18), 3638-3641 (1995)
   PUBMED   7478990
REFERENCE   10 (bases 1 to 1587)
  AUTHORS   Izaurralde,E., Lewis,J., Gamberi,C., Jarmolowski,A., McGuigan,C.
            and Mattaj,I.W.
  TITLE     A cap-binding protein complex mediating U snRNA export
  JOURNAL   Nature 376 (6542), 709-712 (1995)
   PUBMED   7651522
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473967.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001064512.1, XM_001064395.1, XM_001064621.1, XM_001064452.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161994.1, EV765270.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132297, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..1587
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /note="nuclear cap binding protein subunit 2"
                     /db_xref="GeneID:689116"
                     /db_xref="RGD:1596188"
     exon            1..123
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..516
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /note="NCBP 20 kDa subunit; 20 kDa nuclear cap-binding
                     protein; phosphatidylinositol glycan anchor biosynthesis,
                     class Z; nuclear cap-binding protein subunit 2-like"
                     /codon_start=1
                     /product="nuclear cap-binding protein subunit 2"
                     /protein_id="NP_001102995.1"
                     /db_xref="GeneID:689116"
                     /db_xref="RGD:1596188"
                     /translation="MSGGLLKALRSDSYVELSEYRDQHFRGDNEEQEKLLKKSCTLYV
                     GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN
                     GTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYREDYDAGRGGYGKLAQKQ"
     exon            124..305
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /inference="alignment:Splign:2.1.0"
     exon            306..444
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /inference="alignment:Splign:2.1.0"
     exon            445..1587
                     /gene="Ncbp2"
                     /gene_synonym="CBP20; Pigz"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggtcctgcc agccttggcc gcgtcgtgat tcctgtttct gcatcatgtc gggtggcctc
       61 ctgaaggcgc tgcgcagtga ctcctacgtg gagctcagcg aataccggga ccaacacttc
      121 cggggtgaca atgaagaaca ggaaaagtta ctgaagaaga gctgtacgtt gtatgttggg
      181 aatctttcct tttatacaac agaagaacag atttatgagc tcttcagcaa aagtggggac
      241 ataaagaaga tcatcatggg tctggacaag atgaagaaaa cagcgtgtgg gttctgtttc
      301 gtggaatact attcaagagc agatgcagag aacgcaatgc ggtacataaa cggaacgcgt
      361 ctggatgacc ggatcatacg gacagactgg gatgcaggct ttaaggaggg caggcagtat
      421 ggacgtggac ggtctggggg tcaggtccgg gatgagtatc gggaggacta cgatgctgga
      481 agaggcggct atggaaaact ggcacaaaaa cagtgagtgg gcgagccccg agtacacagc
      541 tcacacacat caacacagtt gatgatggag aacatcaccc aaggtctcat cagtgtcgca
      601 gatgtacgtg aagccacttc tggttttcct ctgaaatatt aaaagacaga atccaaagaa
      661 tgcctttaat tctagtctta ttaggatgat tttctgttgt taggtcaaaa actgtatacc
      721 tgagcaacag acagtctgct gattaaactg tcagccggat accacacttg tagggagagt
      781 gggcaaaatg tcagaacgga ctttacaagc acgttggtaa gcttcatggg gactgagatg
      841 attttctaca ttttaagttt tcatgtttat cagtgaggtc ttgctacagt ctatatagct
      901 ttgctctaag taagaacagg tgtgtgtcga ctggatttgc cttttgtatt tcagtctagt
      961 aggcacacca gtcagtctta aatggtcctg ggatgccacg tgcttctctg ctttatgcat
     1021 caggatactc tcaggacttg aggagtgctc actaaacatt cctcaaaaga cgcaaatgtt
     1081 tcactgaaag tttaaaacaa aacaaaaata aggacttacc cagagagcct ccgataccct
     1141 aagtagggag gacactgtca gtagggaatg gagtgaaagc tcaaacactg ccttgatatg
     1201 gaagctgaga ctggaaccat taaattattc cttcccattc caaaaggacc ttagaataga
     1261 gtgggcttta gaaaagggct gcacccaggc ctgtaatccc agctacttgg gaggctgaag
     1321 caagagatca gcccggggac cttgtgagtc tgcctcaagg gtctacggaa ggttccaggc
     1381 acagtggtca ggggcttcct tattacatga gggctcctga aaattaagag tatctaacaa
     1441 cagaaagcct cctctaggat tgtctgttat aactgataca catattttag tctttttttc
     1501 tctgaaattg tgcttactga ggtccatgta ttaatagtaa gctagaagtc agtttcaaca
     1561 gatttttttt cattttcttt gtattat
//
