LOCUS       NM_001402050            2686 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus non-SMC condensin I complex, subunit H (Ncaph),
            mRNA.
ACCESSION   NM_001402050 XR_086214
VERSION     NM_001402050.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Xiong,Q., Fan,S., Duan,L., Liu,B., Jiang,X., Chen,X., Xiong,C.,
            Tao,Q., Wang,J., Zhang,H., Chen,C. and Duan,Y.
  TITLE     NCAPH is negatively associated with Mcl-1 in non-small cell lung
            cancer
  JOURNAL   Mol Med Rep 22 (4), 2916-2924 (2020)
   PUBMED   32945371
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Martin,C.A., Murray,J.E., Carroll,P., Leitch,A., Mackenzie,K.J.,
            Halachev,M., Fetit,A.E., Keith,C., Bicknell,L.S., Fluteau,A.,
            Gautier,P., Hall,E.A., Joss,S., Soares,G., Silva,J., Bober,M.B.,
            Duker,A., Wise,C.A., Quigley,A.J., Phadke,S.R., Wood,A.J.,
            Vagnarelli,P. and Jackson,A.P.
  CONSRTM   Deciphering Developmental Disorders Study
  TITLE     Mutations in genes encoding condensin complex proteins cause
            microcephaly through decatenation failure at mitosis
  JOURNAL   Genes Dev 30 (19), 2158-2172 (2016)
   PUBMED   27737959
  REMARK    Erratum:[Genes Dev. 2017 May 1;31(9):953. PMID: 28566537]
REFERENCE   3  (bases 1 to 2686)
  AUTHORS   Houlard,M., Godwin,J., Metson,J., Lee,J., Hirano,T. and Nasmyth,K.
  TITLE     Condensin confers the longitudinal rigidity of chromosomes
  JOURNAL   Nat Cell Biol 17 (6), 771-781 (2015)
   PUBMED   25961503
REFERENCE   4  (bases 1 to 2686)
  AUTHORS   Nishide,K. and Hirano,T.
  TITLE     Overlapping and non-overlapping functions of condensins I and II in
            neural stem cell divisions
  JOURNAL   PLoS Genet 10 (12), e1004847 (2014)
   PUBMED   25474630
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2686)
  AUTHORS   Pan,X., Papasani,M., Hao,Y., Calamito,M., Wei,F., Quinn Iii,W.J.,
            Basu,A., Wang,J., Hodawadekar,S., Zaprazna,K., Liu,H., Shi,Y.,
            Allman,D., Cancro,M. and Atchison,M.L.
  TITLE     YY1 controls Igkappa repertoire and B-cell development, and
            localizes with condensin on the Igkappa locus
  JOURNAL   EMBO J 32 (8), 1168-1182 (2013)
   PUBMED   23531880
REFERENCE   6  (bases 1 to 2686)
  AUTHORS   Lee,J., Ogushi,S., Saitou,M. and Hirano,T.
  TITLE     Condensins I and II are essential for construction of bivalent
            chromosomes in mouse oocytes
  JOURNAL   Mol Biol Cell 22 (18), 3465-3477 (2011)
   PUBMED   21795393
REFERENCE   7  (bases 1 to 2686)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   8  (bases 1 to 2686)
  AUTHORS   Cabello,O.A., Eliseeva,E., He,W.G., Youssoufian,H., Plon,S.E.,
            Brinkley,B.R. and Belmont,J.W.
  TITLE     Cell cycle-dependent expression and nucleolar localization of
            hCAP-H
  JOURNAL   Mol Biol Cell 12 (11), 3527-3537 (2001)
   PUBMED   11694586
REFERENCE   9  (bases 1 to 2686)
  AUTHORS   Kimura,K., Cuvier,O. and Hirano,T.
  TITLE     Chromosome condensation by a human condensin complex in Xenopus egg
            extracts
  JOURNAL   J Biol Chem 276 (8), 5417-5420 (2001)
   PUBMED   11136719
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Mar 11, 2022 this sequence version replaced NM_001402050.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.320843.1,
                                           SRR22582416.1709196.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000003.1  134852413-134852502 c
            91-328              JAXUCZ010000003.1  134846128-134846365 c
            329-419             JAXUCZ010000003.1  134845766-134845856 c
            420-512             JAXUCZ010000003.1  134844730-134844822 c
            513-651             JAXUCZ010000003.1  134843991-134844129 c
            652-776             JAXUCZ010000003.1  134843256-134843380 c
            777-966             JAXUCZ010000003.1  134841931-134842120 c
            967-1058            JAXUCZ010000003.1  134840802-134840893 c
            1059-1261           JAXUCZ010000003.1  134839909-134840111 c
            1262-1410           JAXUCZ010000003.1  134837605-134837753 c
            1411-1517           JAXUCZ010000003.1  134837021-134837127 c
            1518-1640           JAXUCZ010000003.1  134836366-134836488 c
            1641-1751           JAXUCZ010000003.1  134833410-134833520 c
            1752-1925           JAXUCZ010000003.1  134831041-134831214 c
            1926-2042           JAXUCZ010000003.1  134829358-134829474 c
            2043-2134           JAXUCZ010000003.1  134828260-134828351 c
            2135-2210           JAXUCZ010000003.1  134827816-134827891 c
            2211-2686           JAXUCZ010000003.1  134825271-134825746 c
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2686
                     /gene="Ncaph"
                     /note="non-SMC condensin I complex, subunit H"
                     /db_xref="GeneID:680089"
                     /db_xref="RGD:1596799"
     exon            1..90
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..2270
                     /gene="Ncaph"
                     /codon_start=1
                     /product="condensin complex subunit 2"
                     /protein_id="NP_001388979.1"
                     /db_xref="GeneID:680089"
                     /db_xref="RGD:1596799"
                     /translation="MKIPRSEKMNNSSLKTRGQQDIVSSPSERVLSVSRPAKAPLSTP
                     KTPVLEDFPQNDDEKERMQRRRSRVIDLQFSTDSIHLASPNRNIDVSAPIPKFTNTQI
                     TEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIY
                     AVRVDAVHADVYRVLGGLGKDTPPQEGEESHSGEGSAVETERTKKAAKPKKKQSCRTI
                     EQNLSNINVSEADGKCAVDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDMQ
                     ALSSGEPLELPDLGFVDMTDLKAPLQQCAEDRQLCPSLAGFQFTKWDSETHNESVSAL
                     VDKFKKNDQVFDINAEVEDDDEDVPDGPLVEDFVDNDEPDPCAAGDQEEFRSWKEICQ
                     VPGSQEEIVSLGDRDIQTMCSFLSTKPGEYSYFSPRTMKMWAGPDHWRFRPRPKQNTA
                     SCTENKKKSTKKDFEINFDDDIDFDAYFQKTKVATILTKSTLENQNWKATTLPADFLY
                     ETDNLVQLHLKPDIRSLKMSQSQKAKTEHYEEIEDYDYNNPNDTSNYCPGLQDADSDY
                     EESDGLFAGPVGTLDLESDPKTAQENGHISPESQGVDITTYGESNLVAEPQKVNKIEI
                     HYAKTAKKMDMKKLKQTMWSLLTEFSRKETDIEANHTDNGKEEAPEEVADEKKLSGLT
                     KDLQTRLPPLMAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVRVMQGD"
     exon            91..328
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            329..419
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            420..512
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            513..651
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            652..776
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            777..966
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1058
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1261
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1410
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1517
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1640
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1751
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1925
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            1926..2042
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            2043..2134
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            2135..2210
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
     exon            2211..2686
                     /gene="Ncaph"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgtcacgc ggcagttacc gcgcttggcg ctcacgattt aaaacttaac tacggagacg
       61 tggagagcaa gatgaaaatc ccacgctcag aaaaaatgaa taactcttct ctgaagaccc
      121 gtggacaaca ggacattgtt tcctcacctt cggaacgggt gctttcagtg tcccggcctg
      181 cgaaggcccc tctcagcact cctaaaaccc cagtccttga agactttcct cagaatgacg
      241 atgaaaagga gcgtatgcag cggagacgct ccagggtcat tgacctgcag ttcagcacag
      301 actccattca cctggcctcc cccaacagga atattgatgt ttcagctccc atacctaagt
      361 ttacaaacac acagattaca gaacattact ccacctgtat caagctttct actgaaaaca
      421 aaatcactac taagaatgct tttggcctgc atttgattga tttcatgtca gagattctga
      481 agcagaaaga cacagaacca acaaacttta aagtggctgc tggcaccttg gatgccagca
      541 ccaagatcta tgctgtccgt gtggatgcgg tccatgctga tgtatacaga gtccttgggg
      601 ggctgggcaa agacacacca cctcaagaag gagaagagag ccacagtgga gagggaagtg
      661 ctgtggaaac agagaggact aaaaaggctg caaagccaaa gaagaagcag tcctgcagaa
      721 ccatcgagca gaatctgagc aacatcaacg tctctgaagc agacggaaag tgtgcggtgg
      781 atcctatgtt tcagaagacg gcagcctcct tcgatgagtg cagcacggcc ggggtatttc
      841 tctccaccct ccactgccag gactatagaa gtgagctgct ttttccttcc gacatgcagg
      901 ctctctcctc gggagaacct ctcgagttgc cagatttggg tttcgtagac atgacagact
      961 taaaagctcc tttgcagcag tgtgcagaag accgccagct ctgcccttcc ctggccgggt
     1021 tccagtttac taaatgggac agtgaaacgc ataatgagtc tgtgtcggcc ctggtggaca
     1081 agtttaagaa gaatgatcaa gtctttgaca tcaacgctga ggtcgaagac gatgacgagg
     1141 atgtccccga tgggcccctg gtggaagatt ttgttgacaa cgatgaacca gacccttgtg
     1201 cagctgggga tcaggaagag ttccggagct ggaaagagat ctgtcaggtc ccaggcagcc
     1261 aggaagaaat tgtttccctt ggggacagag acatccaaac catgtgctcc tttttatcca
     1321 cgaaacctgg ggaatactcc tatttcagtc ctcggaccat gaagatgtgg gctggcccag
     1381 atcactggcg ctttaggcct cgacccaagc aaaatactgc ctcctgcaca gagaacaaaa
     1441 agaagagtac aaagaaagac tttgaaatta attttgatga tgatattgat tttgatgctt
     1501 attttcagaa aactaaggtt gctaccattc tgaccaagtc cactttggag aaccaaaact
     1561 ggaaagccac cactcttcct gcagatttcc tctatgaaac tgataatctg gtccagcttc
     1621 acctgaaacc ggacataagg tcgcttaaga tgagccagag ccagaaggcc aagactgagc
     1681 actatgagga aattgaagac tatgattaca acaacccgaa tgacacctcc aactattgcc
     1741 ctggacttca ggatgctgac agtgattacg aagagtcaga cggtttattt gcgggaccag
     1801 ttgggaccct tgaccttgaa tctgatccaa agacagcaca agagaatggt cacatttccc
     1861 ctgaaagcca aggagtagat atcacaactt acggagagtc gaacttggtg gctgaacctc
     1921 agaaggtgaa taaaatagaa attcattatg ccaagactgc caaaaagatg gacatgaaga
     1981 agctgaagca gactatgtgg agtctgctga cagagttttc tagaaaggag actgacatag
     2041 aggcaaacca cactgacaat gggaaggaag aggcccctga ggaagtggct gatgagaaga
     2101 aactcagtgg gctcacaaag gacctgcaga caaggctgcc cccactcatg gctcagaacc
     2161 tctccatacc cctggcattt gcctgtctcc tgcatttagc aaatgaaaag aatctgaagc
     2221 tagaaggcac agaggatctc tctgatgttc gggtaatgca aggggactga gtccacttta
     2281 agacatctgc agcgggaggc ccattgcttc ctggtggcag tggcaaggta ctggacctgt
     2341 tgtgtggcta tagccggcca ccctaatgct ggtttccggt ccctcttgcc acttcagtct
     2401 ggatgccaca ctctgaagca ccatgatgta ggaaggtctt acatatcacc taggagaggg
     2461 gagcccttta gtctgaagtg taaagacagt ctgatcttta tatccatgtg cttctggtca
     2521 ctttctatga cctttctgct ttccattctg tactgtcgag aatagtttct ctgtagcctc
     2581 ttactgtctg atctatgtac ataaaatgta tcatttttaa acttgtaagt atatataata
     2641 ccctaaaata aaactattct ggcacagcat ctgagtgcct agtaaa
//
