LOCUS       NM_203409               7915 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus neural cell adhesion molecule 2 (Ncam2), mRNA.
ACCESSION   NM_203409 XM_221679
VERSION     NM_203409.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7915)
  AUTHORS   Kulahin,N., Kristensen,O., Rasmussen,K.K., Olsen,L., Rydberg,P.,
            Vestergaard,B., Kastrup,J.S., Berezin,V., Bock,E., Walmod,P.S. and
            Gajhede,M.
  TITLE     Structural model and trans-interaction of the entire ectodomain of
            the olfactory cell adhesion molecule
  JOURNAL   Structure 19 (2), 203-211 (2011)
   PUBMED   21300289
REFERENCE   2  (bases 1 to 7915)
  AUTHORS   Yoshihara,S., Omichi,K., Yanazawa,M., Kitamura,K. and Yoshihara,Y.
  TITLE     Arx homeobox gene is essential for development of mouse olfactory
            system
  JOURNAL   Development 132 (4), 751-762 (2005)
   PUBMED   15677725
REFERENCE   3  (bases 1 to 7915)
  AUTHORS   Hamlin,J.A., Fang,H. and Schwob,J.E.
  TITLE     Differential expression of the mammalian homologue of fasciclin II
            during olfactory development in vivo and in vitro
  JOURNAL   J Comp Neurol 474 (3), 438-452 (2004)
   PUBMED   15174086
  REMARK    GeneRIF: Fasciclin II is detectable early in the development of the
            rat olfactory epithelium. mRNA is evident on RT-PCR and in situ
            hybridization by embryonic day E12.5, and protein is apparent by
            immunohistochemistry by E13.5.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Nov 25, 2020 this sequence version replaced NM_203409.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.65894.1,
                                           SRR26360194.1436891.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               JAXUCZ010000011.1  33591823-33592054
            233-307             JAXUCZ010000011.1  33843557-33843631
            308-514             JAXUCZ010000011.1  33846704-33846910
            515-658             JAXUCZ010000011.1  33849424-33849567
            659-796             JAXUCZ010000011.1  33852766-33852903
            797-914             JAXUCZ010000011.1  33864237-33864354
            915-1075            JAXUCZ010000011.1  33870739-33870899
            1076-1221           JAXUCZ010000011.1  33873559-33873704
            1222-1372           JAXUCZ010000011.1  33900677-33900827
            1373-1560           JAXUCZ010000011.1  33936243-33936430
            1561-1657           JAXUCZ010000011.1  33939233-33939329
            1658-1831           JAXUCZ010000011.1  33946896-33947069
            1832-1951           JAXUCZ010000011.1  34004084-34004203
            1952-2073           JAXUCZ010000011.1  34007858-34007979
            2074-2254           JAXUCZ010000011.1  34020054-34020234
            2255-2459           JAXUCZ010000011.1  34059022-34059226
            2460-2579           JAXUCZ010000011.1  34070767-34070886
            2580-7915           JAXUCZ010000011.1  34073453-34078788
FEATURES             Location/Qualifiers
     source          1..7915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..7915
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /note="neural cell adhesion molecule 2"
                     /db_xref="GeneID:288280"
                     /db_xref="RGD:1303131"
     exon            1..232
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     CDS             178..2691
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /note="fasciclin II"
                     /codon_start=1
                     /product="neural cell adhesion molecule 2 precursor"
                     /protein_id="NP_981954.2"
                     /db_xref="GeneID:288280"
                     /db_xref="RGD:1303131"
                     /translation="MSLLLSFYLLGLLVSSGQALLQVTISLSKVELSVGESKFFTCTA
                     IGEPESIDWYNPQGEKIISTQRVMLQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT
                     QEATVVLEIYQKLTFREVLSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIPD
                     NRFAVLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIVMPQKSF
                     NATAERGEEMTLTCKASGSPDPAISWFRNGKLIEENEKYILKGSNTELTVRNIINKDG
                     GSYVCKATNKAGEDQKQAFLQVFVQPHILQLKNETTSENGHVTLICEAEGEPVPEITW
                     KRAIDGVTFSEGDKSPDGRIEVKGQHGRSSLHIRDVKLSDSGRYDCEAASRIGGHQRS
                     MHLDIEYAPKFVSNQTMYYSWEGNPINISCDVKANPPASIHWRREKLVLPAKNTTHLK
                     THSVGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYILELADVPSSPRGVKIIELS
                     QTTAKISFNKPESHGGVPIHHYQVDVKEVTSETWKIVRSHGVQTTVVLSSLEPNTTYE
                     VRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKISITKQDDGGAPIL
                     EYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF
                     SMPPKPNIIKDTLFNGLGLGAIIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMC
                     GKKSGSSGKSKELEEGKAAYLKDGSKEPIVEMRTEDERITNHEDGSPVNEPNETTPLT
                     EPEKLPLKEENGKEVLNAETIEIKVSNDIIQSKEDDIKA"
     exon            233..307
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            308..514
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            515..658
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            659..796
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            797..914
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1075
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1076..1221
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1372
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1560
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..1657
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1831
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1832..1951
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2073
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..2254
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            2255..2459
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            2460..2579
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
     exon            2580..7915
                     /gene="Ncam2"
                     /gene_synonym="Ocam; OCAM-GPI"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgcggcaag gcgcggagct tgcagtcact ttgcgaggag gagcgcgcgg gctgcgggcg
       61 gctggggcac ccgggagcgg cggcgggcta gcagaggcgg ccgtggcagc tgaaggttct
      121 ctctccgggg ctggacttaa taactttgga actgtccgcc ggtgtcacgt cctgaacatg
      181 agcctcctcc tctccttcta cctgctcggg ttgcttgtca gtagcgggca agctcttctt
      241 caagtgacaa tttcacttag caaagtagag cttagtgtgg gtgaatctaa attcttcaca
      301 tgtacagcaa ttggcgagcc tgagagtata gactggtaca accctcaagg agagaagatc
      361 atttcaacgc agagggttat gctacagaag gagggcgtca ggtctcgact aaccatctac
      421 aatgccaaca tagaagatgc aggaatatat cgctgtcaag cgacagatgc caaagggcag
      481 acgcaggaag ctacagtagt tttggaaatt taccaaaaac tcaccttcag agaagtgctg
      541 tcccctcaag agttcaagca aggggaggat gcagaagtgg tttgcagagt gagcagttcc
      601 cccgcccctg cggtcagctg gctgtatcac aatgaggaag tcaccaccat ccccgacaat
      661 cggtttgctg tgcttgcaaa caataatttg cagatcctca acatcaataa aagtgatgaa
      721 ggtatataca gatgtgaagg aagagtggag gccaggggag agattgactt ccgggacatt
      781 attgttattg taaacgttcc gccagcaatc gtgatgcccc aaaagtcctt caatgccact
      841 gcagagagag gagaagagat gaccttaacc tgcaaggcct cgggctcccc agatcccgcc
      901 atctcttggt tcaggaatgg caaactcatt gaagaaaatg aaaagtatat tttaaagggc
      961 agtaatacag agctcacggt cagaaacata atcaataaag atgggggctc ttatgtctgc
     1021 aaagccacaa ataaggcagg ggaagatcag aagcaggcct tccttcaagt tttcgtgcag
     1081 cctcatatat tacaactcaa gaatgagaca acgtctgaaa atggtcacgt cacactcatc
     1141 tgtgaagcag aaggggagcc tgttccagaa atcacatgga aaagagccat agacggagtc
     1201 acattttctg aaggtgacaa gagcccagat ggccgcatcg aagttaaagg gcagcatggc
     1261 cgatcttcac tgcacatcag agatgtgaag ttgtcagatt cgggaagata tgactgtgag
     1321 gccgcgagta gaattggcgg gcaccagaga agcatgcatc ttgacatcga atatgctcct
     1381 aagtttgttt caaatcagac aatgtattac tcttgggaag gaaatccaat caatataagt
     1441 tgtgatgtga aagcaaatcc acctgcctca atccactgga gaagagagaa attggtctta
     1501 ccagctaaaa ataccactca tttaaaaact cacagtgtgg gaagaaagat gatacttgag
     1561 attgccccta catcagacaa tgactttgga cgatataact gcactgcgac taaccgtata
     1621 ggcacgagat tccaggagta tattcttgag ttagcagatg tcccctctag tccccgtgga
     1681 gtgaagatta tagagctgtc acagaccaca gccaagatct ctttcaataa acccgagtcc
     1741 catggaggtg tgcccattca tcactaccaa gtggatgtca aggaagtgac atcagaaacc
     1801 tggaagatag tacgctccca tggagttcaa acgacagttg ttttgagcag cctggaacca
     1861 aatacaacat atgaagtcag ggttgcagca gtgaatggca aaggacaagg agactacagt
     1921 aaaatagaaa tattccagac actgccagtt cgtgagccaa gtcccccttc catacatgga
     1981 cagccaagca gtgggaagag ttttaaaatc agcatcacca agcaagatga tggaggggct
     2041 cccattttag aatacattgt gaaatacaga agtaaagaca aggaagatca gtggctagag
     2101 aagaaggtgc agggaaataa agaccacatt atcttggagc atctgcagtg gacaatgggt
     2161 tatgaagttc aaatcacagc tgccaacaga cttgggtatt ctgagccgac tgtatatgag
     2221 ttcagcatgc ctccaaagcc caacattatt aaagacacac tttttaatgg cctaggcctc
     2281 ggagccatca ttggccttgg agtcgctgcc cttttgctaa tccttgtggt aacagatgtc
     2341 agctgcttct tcattcgaca atgtgggttg ttaatgtgca tcaccagaag aatgtgtggg
     2401 aaaaagagtg gctccagtgg aaaaagtaaa gaacttgaag aaggaaaagc agcttacctg
     2461 aaagatggat caaaagaacc aatagtggaa atgagaacag aggatgaaag aatcactaac
     2521 catgaagacg ggagtccagt aaatgagcca aatgaaacca caccactaac agaacctgaa
     2581 aaattgcctt taaaagaaga aaatggaaaa gaagttttaa atgcagaaac tatagaaatt
     2641 aaagtgtcta atgacatcat ccagtctaaa gaagatgaca tcaaggcata accacaagtt
     2701 tcagcaactc ggtcagcacc acaaggagta tttggattgc agtgacacta tgaccaaaac
     2761 tattccattg accttaattt ctagggaaaa gtctagcttg gaatagcttg tacacatata
     2821 catacgatca acccctcctg ccacagccca tttccttctg ttattgtggt gatggtggtt
     2881 attttgttaa gaattcggta taaaggcttg attggcacca attttagggt ttcggtttca
     2941 ttctataatt gaagtactgc aatttcttag atggctaaag tgctttttct tttttgtctt
     3001 ctgtgacacc aacaaataca tttctctcta aaacattagg ttgtaatgga aggcagagcg
     3061 aaagcattgt gagctaaatg tgtaggaagt gtgtgagagc actgcatgtt taagattctt
     3121 gtcttgggca aacactcttg tgggggcttt cagactaaga caaaggcaca tccggggaat
     3181 ttcagggaac ccaggcttga aagagccaat cagttacctt tcgcagatat tagaaattga
     3241 aaaatcattg gagaactctt tcgacttatg gccacattgc gttttcaaca ttgatcttag
     3301 gtatattgat accaggacaa aattgttaca cattcgaaag aagcttagtt gtgtgtaaaa
     3361 ttagagtaga aagattccta aatctctttt tatgtatacc atattcactc accatggatt
     3421 acacaaaaag taaatgtatt acacgtaaaa atggtattga tttctgccct cagcttcaaa
     3481 taaagtgaat ttaaatggga aaatatcaat atgatgtctt gatatattta taaatacatg
     3541 attattttta tttataaaat aatttatcaa gaatgaggtt gttttcaagt acttcaactc
     3601 attttagata tattttggtg tattgcttta gatgatcgtt aatattatgt gtccctcatt
     3661 aagtgaaagt ggctactaga ctataaaatt atgtgttaaa catatttaat ttaacataca
     3721 aatgtgccag aaaaaaacct gaacaattga aacactacta atgtttttaa aacattgcat
     3781 tctaaaatcc atttaaaacc tacttcaaga attttgataa acagctatgg ttgaagcaac
     3841 catttaacaa ttcaacataa agtttctaat attacatgtt aagtattata taagaatata
     3901 ttagttacta acaagctatg caaactccct gaggtcaaag tctgaatttt gatttaactt
     3961 atgagaaaca aacaaacaaa ataccacatt tgtggctatc agtatacata ggttaggggc
     4021 aggggtttga agatttctta agtcagagtc tagaaagttt ctaaaaactc cctcctcctc
     4081 acaacctttg gtgtcaggtt atcaagtaaa cagcttcaac attaatgtgt tggagaatac
     4141 attctaatag cttattgaag gaatgctttt aacaatgcag gtggatatgc tcttatacaa
     4201 tctctcttca tatgtacctt cacgaaaata taataaaata gtaatgccac tccaaaatac
     4261 ttttatttat aaaatgcttg tttatcatcc aaggagagcc cgtgtatgct gttcttcaca
     4321 tgctagttgt caactagact aagtgttccc aactgcatgc taaggcgctg ttatagccac
     4381 agtgctttgc tggaaattca ggactaacaa ttaatacggg gacctctttg ctgctcatca
     4441 tgacatattc tgaagagaga gggagagagg aaaacacaca caccacacac acacacacac
     4501 acacacacac acacacacac acacacaaac acacacacag atctgtgcct gtttgagaat
     4561 aagaacagtg tctaaaataa gtcaacagac cagtttaacc ctttgaccag tgtggcgata
     4621 acacatgttc ttgacagatt tgcctggggt gtttagctta tgtttgtctg gttaactggc
     4681 ttcctttgta aaatgtactt cattatgctt gttttgtttt gtatcaaacg tgctaaaact
     4741 agtcagaata cttgaatttg tttgtttgtg taaagtgaac aggcttagtg gtgtctatga
     4801 agcaatagcc atgaacactg acgttttgtt tttgtttttt cctggataga accacatggg
     4861 tttgaactaa tgatattaaa ataatttgta tgactgataa agcgatttcg catgtttaga
     4921 attgtcatgt ttgtgctata cgacaagaac agagaaatca gacgaaaaat atttgtttgt
     4981 gttttctcaa tttgaaactt taattttatc atagcttcag attttatatg taaagaaacc
     5041 aaattatata taattaaatt tcttgtccat cttatggagc cattaggtaa ctttggatag
     5101 atactgcaca tggtatcaat tgtctaggag atgctcaatc aaaatcatcc ttgaaattga
     5161 taccctgcaa taacaatata ttgatttgga aaacatttaa aatttcaaag aaattctctt
     5221 aattatacaa tttgcaaagt ctctaaatga gaaaagtatt atctaacatt ctcaactcat
     5281 gggtaatcct gaaattatct tttattttta atcctgtttt agtctaaaaa attaatgtac
     5341 ctttaactat ctgagagtcc acttatatgt tatgatacaa tacccactgg aaaaatttaa
     5401 ttattattaa gttaatttga actttgtaac aattaaaaca aagaggcaaa taaatgtaac
     5461 gttaggaaca tttaaaaact acagtctcta tttgacatca tataagagga aattttaaca
     5521 tttgaattta atgcatattt tatttttaaa actggcacaa atgagtgtat caaagtaatt
     5581 ttcaattatt ttaaattgag ttagtaatgg tgatttcaac aggttaattt atgattttgt
     5641 gataataagc attactgctc tatttatact aatctctaac attaagtctt taaaacattt
     5701 atttttaata gtaatacata aaccaacatt ttctaagggt ttttgatcca acagatgtca
     5761 tatgaatttc agtctttgag ttaagcatat atataaataa aaaagatatt actaatgaac
     5821 tgaattacaa gttccagcaa ctaattgtat attgaaatca tcttaattct ctgaatagtc
     5881 aacaggtatc tgtgccttta tattagcatg acattctgtt aaggaaaaat tacagctact
     5941 ctcgctgttt atatgtttta atcaaacatg tgacactaaa tcgacagtgt ttacattcag
     6001 tgaaaataac ttaaacacaa cctcttttcc ttagacataa aatccaagcc aaaaaaaata
     6061 tgtatacact taactctact ttaatttatg acaaaaagta cttcagtcca tctataagat
     6121 actttaattt gttctatatt gtatttctag atgataagtc catattgaga aaactgtgac
     6181 attagcccta agaaacacaa gagatgctac ttagaaacag ggcaatcact tgagtcctca
     6241 gtgttgctgt tgacaatatt aactgtccat atgatgacaa gaaaaacaaa aatcaaaatg
     6301 tctataattc aagcagtcaa agaagtttaa atttacattt ttaatttaag aaatattggt
     6361 gtagcatata ataatttttt taattaaatt atttttcatg gattatgata gagattctta
     6421 gtttaatttc ctcatgtact tttccttcag atggattgtt ttttagcaat tcatgagagg
     6481 tgaaaatcaa ttttaaatga gaggtttctt atttatgtca aattttcttc tcttaacact
     6541 ttggaatatc ctaccgaaaa cgtaaatagc atatagatat atttacatat gctgaaattg
     6601 aattgtggtt ggttaagaaa tcaaatttaa acacagatgt taaattattt aagataaaat
     6661 tatatatatg gtcttaataa tattctaata tgaaacaact gtatgtataa atgaaaatat
     6721 tataaagggc ctagcaatag taaatggtaa gtacatgtaa ttttcttcca ggcttcacca
     6781 ttctttttat ttattttatt ttattttatt ttattttatt tctgttcacc catgtagatg
     6841 cagctatttt aacaatatta ctaaaataat aaatctctcc ctttatataa taatctctga
     6901 attttatatt atatataatg gtaaatattt atttggtaac acatttaaca ttcttaaaaa
     6961 tgcttcctta ttaacgtatt catttataat atttttaaat caattagttc attctgtccc
     7021 tttaatcgtc ttgatttttc aaaacaattt tttgggttag agatcaggca ttgttcatga
     7081 ttattattaa tagatattat atatcctacc tttttctttt atgattttaa agcccatatc
     7141 actttgtgta taattttagc cttgcatgga agagaataag taaagcaatg atgtttggaa
     7201 tgtttctgcc acatccaaat agaaaagatg aggaaaagag aaattaaact ataagacaga
     7261 tgaacttttt atttggaagg tatggtatac agaaatgcct gatcaaggaa tagaaacatt
     7321 ataagcaaat gttagcacca ataatggcag agaaaggaaa taccctaatg gaatctagaa
     7381 gaccacccga acaccgagat atggtgtaat tcaatttgca aatgagatgt ttaagctaac
     7441 gacatactgc tgtaaaatta tgatatcgtt aaaaataaaa acaagtgtct gcatcttcaa
     7501 aaaatgttgt tggtttagga ttttcctcta acccctgtga aaactaaatc aacatggaaa
     7561 taaactattt taagaaactc ttacatttga gggtatgtga atcctaaagt ctaatcagta
     7621 ataataaaac atgcagtcat ttatcttctt taacttatac cttccattca aattctgtat
     7681 tcttaactat cctgttttct tattatttcg atatagtatg tccctatgaa atgctgtaca
     7741 tatatatatg tctaaactgt aaaaagtata ctgcaaatgt tgaagttttg tatttatgaa
     7801 agacattgaa agtatggctt atggtatttc aaaattgtca ctcttcacca tttgtatatt
     7861 aatagtaaag atacttttac tttaataaag tgtcaaattt tatgcttttc taaaa
//
