LOCUS       XM_006239902            7468 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NBAS subunit of NRZ tethering complex
            (Nbas), transcript variant X1, mRNA.
ACCESSION   XM_006239902
VERSION     XM_006239902.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239902.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239902.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7468
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7468
                     /gene="Nbas"
                     /note="NBAS subunit of NRZ tethering complex; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 23 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 69 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:690073"
                     /db_xref="RGD:1585140"
     CDS             48..7130
                     /gene="Nbas"
                     /codon_start=1
                     /product="NBAS subunit of NRZ tethering complex isoform
                     X1"
                     /protein_id="XP_006239964.1"
                     /db_xref="GeneID:690073"
                     /db_xref="RGD:1585140"
                     /translation="MAAPESAPALSPGSADEEETILYDLLVNTEWPPETEVQPRGNRK
                     HGASFIITKAIKDHLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLANNGKLLAA
                     VQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDL
                     MGSELFVIAPASVFAGDLSYAIAGLVFLEYKASAQWSAELLVINYRGELRSYLVSVGT
                     NQSYQESHSFSFADHYPHGVNTAIYHPGHRLLLVGGCETAELGISKASSCGLSAWRVL
                     SGSPYYKQVTNGGDRVTEVPKTLGLLKLLSVKFYTRQGQEQDGIFKMSLSPDGSLLAA
                     IHFSGKLSIWAIPSLKQQGVWRQDEQPGYDELNPDWTLSPEKRKKVKDKESFYPLIDV
                     NWWADGAVTLARCSGALTVSSSKSLKNLLGKSCEWFEPSPQVTATHDGGFLSLECEIK
                     LAPKRSRVEMRAGEEDEGDVDSDWDHETSAKARYFGYIKQGLYLVTEMERFAPPRKRP
                     RTITKNYRLVSLRSTTPEELYQRKIESEEYEEALSLAHTYGLDTDLVYQRQWRKSAVN
                     IASIQNYLSKIKKRSWVLHECLERVPENVDAAKELLQYGLKGTDLEALVAIGKGVDDG
                     RFTLPGDVDLDGITYEELSPPHKEPAQSKRQKELKKRHELLKLVNFSKLTLEQKELCR
                     CRLKLLTFLDRLATYEEILGAPHASEQRYDAEFFKKFRSQNIVLSARTYARESNVQAL
                     EILLTYHGSDLLPHRLAILSNFPETTSPHEYAVLLPEACWNNDSLMIIPWAEQKHRAE
                     DWCEELECRMVVEPGLQDDSEFLYAAQPELLQYRTPQLTVEKAMAWYRSRAQDIEHHA
                     GQVDCALSLVRLGMERHIPGLLTLCDDLVTLETLVYEAGCDFTLTLKDLQQMKDFEKL
                     RLLMERCSEDNYVTSAYQWMVPFLHRCEKQSAGAANELLREYLVTLAKGDLKLPLKIF
                     QHSKPDLQQKIIPDEDQLMAIALECIYNCERSDQLSLCYDILECLPQRGCGLNTKVTS
                     SLHDMVDQLEKILSVSELLKNHGLEKPVSFVKNTQSSSEEARSLMVRLTRRTGRKQPS
                     VGESHWRMLLQDMLTMQQHVYTCLDSSACYEIFTESLLCSSRLENIHLAGQMMQCSAC
                     SDNLPAGVVHKGKPQYRVSYERSIDLVLAASREYFNSSTSLTDSCMDLARCCLQLITD
                     RPAAIQEELDLIQALGYLEEFGVKILPLQVRLCSDRISLIKECVSQSPTCYKQSAKLL
                     GLAELLRVAGEDPEERHGQVLILLVEQALNVHDYKAASTYCQELMAAGYPDSWDVCSQ
                     LGQAEGFRDLATRQELMAFALTHCPPSSIELLLAASSSLQTEILYQRVNFEIHPEGEN
                     INVVSPLTGKVLQEDDTSLGSSSADLLQWTTATTMRVLSNTTTTTRAVLQAVSDGQWW
                     KKSLAYLRPLQGQDFGGAYRIGTVANDDLERQGCHPFYESVIANPFVTEQVPVESLAE
                     VLLRTGKLAEAKAQVFPTTEVLLQLASDALPNDMTLALAYLLALPQVLDANKCFEKQA
                     HSALSLQLAAYYYSLQIYARLAPCFRDKCHPLYRVDPKELIKMVTRHVAQHGHEAWPE
                     DLLSLTRQLHYYNERLLDFTQAQLLQGLRKGVDVQRFTADDQYKRETILGLAETLEEN
                     VYSIALSLAQRYSISQWEVFMTHLEFLFSDSGLSTGEIEKRAQALHLFDTLKTDPESF
                     HKHMVKYIYPTIEGLDHERLLYYFTLLESCGCADFETAAIKPEIHIRLLKKFKVVASG
                     LNYKKLTDKSEDALEALEPVLTSQNILSISKLAPRIPEKEGQMLSPSSLYTVWLQKLF
                     WTGDPHLIKQAPESSAEWLHAYDVCLKYFDRLGPHDLITVVDAITFSPKAVSKLSVEA
                     REEMTRKAIKTVKHFIEKPRKRNSEEDPQEGSGSQATYADALAHLETSLAHLETLSHS
                     FILSLKNSEQEVLQKYSYLYDLSRAEKGKLNDQAVAMCLDGQPLRMIQQLLEVAIGPV
                     NISPKDVVHTAITQIISSLSGTGADLCGSRDPLQVLEGVVGAVRTSVDNGEELVSAED
                     LLQWLRPFCAEDSCPVRPRIQVLQLLGQSFHLSEEDNKLLVFFRTEAILRAAWPQRQV
                     DVADTESEESRHSLFMELLESSHHEVEFQHLILLLQAWPPMKSECVSSIANNLWVRLV
                     TVMLTRCTTENKQRLGDEVLKICRSLYNSGQMLPVQGVKELCLLLLHQSLLLPSLKLL
                     LESGDETLQAMALEQISAVTKVNDSNCDQELLSLLVDARLLVKCVSTPFYPHIIAHLV
                     ANNQQGRWNAEELARHLQEAGHEAEAGSLLLAVQGTHRVFRTFSTALSALRQWV"
ORIGIN      
        1 cgaggtgccg tagtgcccct ccctccacca ctctgtttca ggccaacatg gcggcccccg
       61 agtcggcgcc ggctttgagt ccgggctctg cagacgagga ggagacgatt ctctatgact
      121 tgctagtcaa caccgagtgg ccacccgaga cagaagtgca gcccagaggc aaccgaaagc
      181 atggtgcatc attcatcatc acaaaagcaa tcaaagatca tctgttattt ttgcgtcagt
      241 acatctggta cagccctgcc ccgtttttgc ttcctgacgg actggttcgc ttggtcaata
      301 aacagataaa ctggcatttg gtactcgcaa acaatggtaa acttctggct gctgttcaag
      361 atcagtgtgt ggagatcagg tctgcaaaag atgattttac atcaattatt gggaaatgtc
      421 aagttccaaa agacccgaag ccccagtgga gacgagtggc atggagttac gactgcacac
      481 tgctggccta tgctgagagc acagggactg taagggtgtt tgatctcatg ggcagcgagc
      541 tctttgtcat tgccccggcg tctgtctttg ctggggactt aagctacgcc attgctgggt
      601 tggtattttt agaatacaaa gcaagtgcac agtggtctgc agagctcttg gtcatcaatt
      661 accgaggaga acttagaagt taccttgtca gtgttgggac aaatcagagc taccaagaga
      721 gtcacagttt cagctttgct gatcattatc cgcatggagt aaataccgct atttaccacc
      781 ctggtcatag gcttttactg gttggtggat gtgaaactgc tgaactgggc atttctaaag
      841 cttctagctg tggcctttct gcatggagag tcctctcagg ctcaccgtat tataagcaag
      901 ttactaatgg tggagacagg gtcaccgagg tgccaaagac actgggatta ttaaagctgt
      961 taagtgtcaa gttttacact cggcagggac aagaacagga tggaatcttc aagatgagcc
     1021 tttctcctga cgggagcctc cttgcggcaa ttcacttctc agggaagttg agcatctggg
     1081 ctattccgtc tctgaagcag caaggcgtct ggcggcaaga tgagcagcca ggctatgatg
     1141 agcttaatcc tgattggaca ttgtctcctg agaagagaaa gaaagtaaaa gataaagagt
     1201 ccttttatcc gttgattgat gtcaattggt gggcagatgg cgcagtgacc ttggctcgat
     1261 gctctggtgc attaactgtt tcatcatcca aaagtttgaa gaatttacta ggaaaatcct
     1321 gtgaatggtt tgagccatcc ccacaggtca ctgcaaccca tgatggggga ttcttaagtt
     1381 tggagtgtga aattaaactt gcccccaaac ggtctcgagt ggagatgagg gctggagaag
     1441 aggatgaagg cgacgtggat tctgactggg atcatgaaac ctctgccaag gctcgctatt
     1501 tcgggtacat caagcaaggc ctttacttag tgacggagat ggagaggttc gcacctcctc
     1561 ggaaacggcc tcgaactatc acgaagaact accgccttgt gagtctgcgc tccacaaccc
     1621 cagaggagct ttatcagagg aagattgaaa gtgaagagta tgaagaagcc ttgtctttgg
     1681 ctcacactta cggcctggat actgaccttg tctatcagag gcaatggagg aagtcagctg
     1741 tcaacattgc ttcaattcag aattacttga gtaaaatcaa gaagcggtct tgggttctcc
     1801 atgagtgtct ggagagagtt cctgagaatg tggacgctgc caaggaactg ctgcagtatg
     1861 gcttgaaagg cacagacctg gaggctctcg tcgctatagg aaagggcgtg gatgatggca
     1921 gatttacctt acctggtgac gtagaccttg atggcatcac ctatgaggaa ctttccccac
     1981 cacacaaaga gcctgcccag agcaaacggc agaaggagct caagaagaga catgaactgc
     2041 tcaaattagt gaacttttca aagttgaccc tggaacaaaa ggagctgtgc cgttgtagac
     2101 tcaagttact aaccttctta gatcggcttg caacctatga ggaaatccta ggggcgccgc
     2161 atgcatctga acagagatat gatgctgaat tttttaagaa gttcagaagt cagaatattg
     2221 ttctctcagc aagaacgtat gctcgggaga gtaatgtaca agctctggaa atcctgctga
     2281 cataccatgg ctctgatctg ctacctcatc gccttgctat cctctccaac tttccagaaa
     2341 ccacctctcc ccacgaatac gctgttctgt tgccggaggc ttgctggaac aatgactcct
     2401 tgatgatcat cccttgggct gagcagaaac accgagctga agactggtgt gaggaactgg
     2461 agtgcagaat ggtggtggag ccgggcctgc aggatgacag tgagttcctg tacgctgcgc
     2521 agcccgagct tctgcagtac aggacacccc agcttaccgt ggagaaggcg atggcctggt
     2581 atcggagccg agcacaggac atagagcacc acgccgggca ggtggactgc gccttgtcac
     2641 tcgttcgcct tggaatggag cgccatattc ctggcttgct gactctctgt gacgatttgg
     2701 tgacactgga aacactggtt tatgaagcag gctgtgactt caccctcact ctgaaagacc
     2761 tgcaacagat gaaagacttt gagaagctga gattactgat ggagcgttgt tctgaggaca
     2821 actacgtgac cagtgcctac cagtggatgg ttccttttct ccaccgctgt gagaaacagt
     2881 ctgctggtgc ggccaacgag ctactaagag aatatctagt aactttagct aagggagact
     2941 tgaaacttcc cttgaagata tttcagcatt ctaaaccaga tctgcagcaa aaaattattc
     3001 ctgacgagga ccagctgatg gcaatcgcac tcgaatgcat ctataactgc gagcggagtg
     3061 accagctctc actctgctat gacatcttag aatgcctccc acaaagggga tgtgggctca
     3121 atacaaaggt aacctcatct cttcatgaca tggtagacca actggagaaa attctcagtg
     3181 tgtctgagct tttgaaaaac catggactgg agaaaccagt ttcgtttgtg aagaataccc
     3241 agtccagctc tgaagaggct cgcagcctaa tggttcgact gaccaggcgc actgggcgga
     3301 agcagccttc cgttggggag tcacactgga gaatgctact gcaggacatg ttgaccatgc
     3361 agcagcacgt gtacacgtgc ctcgattcca gtgcttgcta tgagatattt acagaaagcc
     3421 ttctttgctc cagtcgcctg gaaaacatcc atctagcagg gcagatgatg caatgcagtg
     3481 cctgttcgga taatcttcca gctggtgtgg tccataaagg aaaaccccag tacagggtca
     3541 gctatgagag aagtattgac ttggttttgg ctgccagtag agagtacttc aactcttcca
     3601 ccagcctcac tgacagctgc atggatctgg ccaggtgctg cttacagctc ataacggaca
     3661 ggccggccgc cattcaggag gaattagacc tcatccaagc cctggggtat cttgaagaat
     3721 ttggggtgaa gatccttcct ttgcaagtac ggttgtgttc tgaccgaatc agcctcatca
     3781 aggagtgtgt ttcccagtcc cccacatgct acaaacagtc agccaaactt ctaggccttg
     3841 ctgagttgct gagagttgca ggtgaagacc cggaagaaag gcatgggcag gttctgatcc
     3901 tgttagtgga gcaagcgctc aatgtccatg actacaaagc agctagtacg tattgtcagg
     3961 agctgatggc cgcaggatat ccagacagtt gggatgtttg cagccagctg ggccaagcag
     4021 aaggtttccg ggacctggcc actcgtcagg agctcatggc tttcgctttg acacattgtc
     4081 ctcccagcag cattgagctt cttttggcag ctagcagctc tcttcaaaca gagattcttt
     4141 atcaaagagt aaattttgag atccatcctg aaggagaaaa tattaatgtt gtctcaccct
     4201 taactggtaa agttttacaa gaggatgata cttctttggg cagcagttca gcagacctgt
     4261 tacagtggac cactgcaacc accatgagag tcttgtccaa taccacgact actaccaggg
     4321 ctgtgctgca agctgtcagc gatgggcagt ggtggaagaa gtccttggca tacctgcggc
     4381 ccctccaggg gcaggacttt ggtggagcat atcgaattgg aactgtagcc aatgatgatc
     4441 tagaaagaca aggatgccac cctttttacg agtcagtcat tgctaatccc tttgtcactg
     4501 agcaggtccc tgtggaaagt cttgccgaag tgttgctgag aactggaaag ctggcagagg
     4561 ccaaggcaca agtgttcccg accacagaag ttctcttgca actagcaagt gatgctttgc
     4621 cgaatgacat gacattggct cttgcttatc tccttgcctt gcctcaggtg ttggacgcta
     4681 acaagtgctt cgagaagcag gctcattcgg cactgtctct ccagctggca gcgtactact
     4741 acagcctgca gatctatgcc cggttggctc catgtttcag ggacaagtgc catcctcttt
     4801 acagggttga tcccaaggaa ttaatcaaga tggtgaccag gcacgtggct cagcatgggc
     4861 acgaagcctg gcccgaggac ctcttgtcac tgaccaggca gctgcactac tacaatgaac
     4921 gccttctgga cttcacccag gctcagctcc tccagggcct gcggaagggc gtggacgtgc
     4981 agaggtttac cgctgatgac cagtacaaaa gagaaaccat cctgggcctt gcagaaaccc
     5041 ttgaggaaaa tgtctacagc attgctcttt ccctggcaca gcggtacagt atctcacagt
     5101 gggaagtctt catgacccat ttggagttcc tgttcagtga tagtggtttg tccacaggag
     5161 aaattgaaaa gcgagcccaa gctcttcatc tctttgacac tttgaagaca gatcctgagt
     5221 cctttcataa acacatggtc aagtatatct accccaccat cgagggtctt gatcatgaaa
     5281 ggctgctgta ttatttcact ctcttggaaa gctgtggttg tgcggacttt gaaacagctg
     5341 ctatcaaacc agaaatccat atccgcctcc tgaagaaatt taaagttgtt gcatcaggtc
     5401 ttaattataa gaagctgact gataaaagcg aggatgcact ggaagcactg gagcctgtgc
     5461 tcacgagtca gaatatctta tctatttcca aacttgctcc cagaatccct gagaaggagg
     5521 ggcagatgct gtctcccagc tctctgtaca ctgtctggtt gcagaaattg ttctggactg
     5581 gagatcctca cctcatcaag caggctccgg agtcttccgc agagtggctt catgcctatg
     5641 acgtctgcct gaagtacttt gatcgactcg gtcctcatga cctcatcact gttgtggatg
     5701 caattacatt ttctccaaaa gctgtgtcca agctatcagt agaagcacgt gaagagatga
     5761 ccagaaaggc cattaagaca gtcaagcatt tcatagaaaa accaaggaaa agaaattcag
     5821 aagaagaccc ccaagaaggt agtggttctc aggccaccta tgcagatgcc ttggctcatc
     5881 tggagacgtc acttgcccac ctggaaaccc tcagccacag cttcatcctc agtctgaaga
     5941 atagtgagca ggaagtactg cagaaataca gttatctcta tgatctgtcc cgagcagaaa
     6001 aagggaagct taatgaccaa gctgtggcca tgtgtttaga tggccagcct ctaaggatga
     6061 ttcagcagct gctagaagtg gccattggtc ctgtcaacat ctcacccaag gatgtagtgc
     6121 acactgcaat cactcaaata atttcttcat tgagtggcac tggtgctgat ctttgtgggt
     6181 cacgtgaccc cctccaggtc ctggaaggtg ttgttggggc agttcgcacc agtgtggaca
     6241 atggggagga gctagtgtct gctgaagacc tgctgcagtg gctgcggcct ttctgtgctg
     6301 aagactcttg tcccgtgagg cctcgaatcc aggtgctcca gctcttgggg cagtccttcc
     6361 acctgagtga ggaggacaac aagctcctgg tgttctttcg aacagaagcc attctcagag
     6421 cagcatggcc tcagagacag gtggatgtag ctgacactga gagtgaagaa agccggcact
     6481 ctctattcat ggagctcctg gaatccagtc accatgaggt cgagtttcag cacttgattt
     6541 tactcctgca agcgtggcca cccatgaaaa gtgaatgtgt gagcagcata gccaacaacc
     6601 tgtgggtgag gctggtgact gtgatgctga ccagatgtac aacagagaac aagcagagac
     6661 ttggagacga ggtgttgaag atctgccgct ccctctacaa cagcggacag atgctgcctg
     6721 tgcagggtgt gaaggagctg tgcctgctgc tgctgcacca gtccctcctg ctcccatccc
     6781 tgaagcttct tctggagagt ggagatgaaa ctctacaggc catggccctg gagcaaatct
     6841 cagctgtcac taaggtgaat gactctaatt gtgaccagga gctgctttcc ctgctcgtgg
     6901 atgccaggct gctggtgaaa tgtgtctcca cacccttcta cccacatatc attgctcacc
     6961 ttgtggccaa caaccagcag gggcgctgga acgcagagga gctggctaga cacctgcagg
     7021 aggccggaca tgaagctgaa gctggctcac tcctcctggc tgtccagggg actcatcggg
     7081 tgttcagaac tttcagcact gccctcagtg cactgaggca gtgggtgtga gcacagccac
     7141 ccatgacctt gctcctggca ggagagagca tcagacccca aagccatgcc cgaagcagca
     7201 tttgtagcaa ttaattgttc tcagcatttc taataagtca tgaataaagg tatatgtata
     7261 tatataaatg gcaaccaatg cccttcaagt actttctcat actgatgggt tagcatactc
     7321 tgttattatc gtggattttt tttgcctttt taaatttttc ttttctgagt agaacccagt
     7381 taattgaatg ggaaactata cttaagaaaa ttgagaatgg tggtgcactg tatgagagag
     7441 tatggtatat taaatggctt ggatgaaa
//
