LOCUS       NM_001398659            3563 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus NSF attachment protein gamma (Napg), transcript
            variant 1, mRNA.
ACCESSION   NM_001398659 XM_006254829
VERSION     NM_001398659.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Kang,D., Oh,S., Ahn,S.M., Lee,B.H. and Moon,M.H.
  TITLE     Proteomic analysis of exosomes from human neural stem cells by flow
            field-flow fractionation and nanoflow liquid chromatography-tandem
            mass spectrometry
  JOURNAL   J Proteome Res 7 (8), 3475-3480 (2008)
   PUBMED   18570454
REFERENCE   3  (bases 1 to 3563)
  AUTHORS   Schroder,B., Wrocklage,C., Pan,C., Jager,R., Kosters,B.,
            Schafer,H., Elsasser,H.P., Mann,M. and Hasilik,A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
REFERENCE   4  (bases 1 to 3563)
  AUTHORS   Werner,H.B., Kuhlmann,K., Shen,S., Uecker,M., Schardt,A.,
            Dimova,K., Orfaniotou,F., Dhaunchak,A., Brinkmann,B.G., Mobius,W.,
            Guarente,L., Casaccia-Bonnefil,P., Jahn,O. and Nave,K.A.
  TITLE     Proteolipid protein is required for transport of sirtuin 2 into CNS
            myelin
  JOURNAL   J Neurosci 27 (29), 7717-7730 (2007)
   PUBMED   17634366
REFERENCE   5  (bases 1 to 3563)
  AUTHORS   Tani,K., Shibata,M., Kawase,K., Kawashima,H., Hatsuzawa,K.,
            Nagahama,M. and Tagaya,M.
  TITLE     Mapping of functional domains of gamma-SNAP
  JOURNAL   J Biol Chem 278 (15), 13531-13538 (2003)
   PUBMED   12554740
REFERENCE   6  (bases 1 to 3563)
  AUTHORS   Chen,D., Xu,W., He,P., Medrano,E.E. and Whiteheart,S.W.
  TITLE     Gaf-1, a gamma -SNAP-binding protein associated with the
            mitochondria
  JOURNAL   J Biol Chem 276 (16), 13127-13135 (2001)
   PUBMED   11278501
REFERENCE   7  (bases 1 to 3563)
  AUTHORS   Nishiki,T., Nihonmatsu,I., Tsuhara,Y., Kawasaki,M., Sekiguchi,M.,
            Sato,K., Mizoguchi,A. and Takahashi,M.
  TITLE     Distribution of soluble N-ethylmaleimide fusion protein attachment
            proteins (SNAPs) in the rat nervous system
  JOURNAL   Neuroscience 107 (3), 363-371 (2001)
   PUBMED   11718992
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Dec 21, 2021 this sequence version replaced XM_006254829.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY724541.1, SRR26360172.394465.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               JAXUCZ010000018.1  58710702-58710864
            164-231             JAXUCZ010000018.1  58713301-58713368
            232-316             JAXUCZ010000018.1  58715431-58715515
            317-334             JAXUCZ010000018.1  58716175-58716192
            335-365             JAXUCZ010000018.1  58716760-58716790
            366-475             JAXUCZ010000018.1  58718811-58718920
            476-542             JAXUCZ010000018.1  58719044-58719110
            543-613             JAXUCZ010000018.1  58719573-58719643
            614-692             JAXUCZ010000018.1  58721953-58722031
            693-772             JAXUCZ010000018.1  58724140-58724219
            773-902             JAXUCZ010000018.1  58724833-58724962
            903-3563            JAXUCZ010000018.1  58726790-58729450
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.1"
     gene            1..3563
                     /gene="Napg"
                     /note="NSF attachment protein gamma"
                     /db_xref="GeneID:307382"
                     /db_xref="RGD:1310109"
     exon            1..163
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1046
                     /gene="Napg"
                     /note="isoform 1 is encoded by transcript variant 1;
                     N-ethylmaleimide sensitive fusion protein attachment
                     protein gamma; gamma-soluble NSF attachment protein;
                     N-ethylmaleimide-sensitive factor attachment protein,
                     gamma"
                     /codon_start=1
                     /product="gamma-soluble NSF attachment protein isoform 1"
                     /protein_id="NP_001385588.1"
                     /db_xref="GeneID:307382"
                     /db_xref="RGD:1310109"
                     /translation="MAAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVA
                     FKNAKQFEQAKDACLREAVAHESNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKAS
                     MMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKA
                     SRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVR
                     ESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSEVCNSPLFKYMDNDYAKLGLSLVVP
                     GGGIKKKSPATPQAKPEGAAGAAAEEEEDEYSGGLC"
     exon            164..231
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            232..316
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            317..334
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            335..365
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            366..475
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            476..542
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            543..613
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            614..692
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            693..772
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            773..902
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
     exon            903..3563
                     /gene="Napg"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaggcccct ttcccggctt cctccgcggc gttcccacgc cgacgctcta ggtgttttgc
       61 tgagctctag gctgtttcac tcttcgcgtc agcaagcggc cgaggcaatg gcagcccaga
      121 agataaacga ggggctggag catctagcca aggcagagaa gtacctgaaa actggttttt
      181 tgaagtggaa gccagattac gacagcgctg cctctgagta tggaaaagca gctgttgctt
      241 ttaaaaatgc caaacaattt gagcaagcaa aagacgcctg cctacgggaa gctgtcgccc
      301 atgaaagtaa cagggctctt tttcatgctg ccaaagctta tgagcaagct ggcatgatgt
      361 tgaaggagat gcagaaactg cctgaggccg tgcagctgat cgagaaagcc agcatgatgt
      421 acctggagaa tggcacgccg gacacagcag ctatggcctt ggagcgagca ggaaagctca
      481 tagaaaatgt agatccagag aaggctgtac agttgtatca gcagactgcg aatgtgtttg
      541 aaaatgagga gcgcctccgg caggcagttg agctcctagg aaaggcctcc agactgctcg
      601 tacgaggacg caggtttgat gaagccgcat tgtctattca gaaagaaaaa aatatttata
      661 aggaaattga gaactatcca acttgttata agaaaacaat cgctcaggtc ttagttcatc
      721 tacacagaaa tgactatgtg gctgcagaga ggtgtgtccg ggagagctac agcataccag
      781 ggtttaacgg cagtgaagac tgtgccgcgc tggaacagct cctggagggc tatgaccagc
      841 aagaccaaga tcaagtgtcc gaggtctgca actcgcccct gttcaaatac atggacaatg
      901 actatgctaa gctgggccta agcttggtgg tcccaggagg aggaatcaag aagaaatccc
      961 cagcgacacc ccaggccaag cctgagggtg ctgcgggtgc tgctgctgaa gaggaggaag
     1021 acgagtattc gggaggcctg tgctagtgcc ctgcctgcag ggatgagaag acgggatgct
     1081 gacgagcctt tctcatggaa ctaggactcg tcctgtggac gcctctgctt caccgaagtt
     1141 ctgatgttga atgttaatta tctgaagttt tagttttcca tttcccacac cagccattgt
     1201 atctactgcc tgtgaggcat tctttccttt ctcttgtaag cagaaaataa atcgtcatat
     1261 tttaacaatt gatttaaaaa tgtataggcc aaattccaga taaatgatat catcagcaaa
     1321 gcaggaaata ggtatactca gtcttttctc ttgggttctt tttattgtta gataattttc
     1381 tttgcatttt atttaatgcc atttctaaac atgctgggtt ttgggtgaaa ataataattt
     1441 caaaactgat ctggttcttt ccaccgtctt cccatgttgt cacttagcgc ccacgcatgt
     1501 ccccgctaag agcatcaaca atgccaaaaa gaaaggcaga cagcggttct cagcaggttc
     1561 tcctccagga ccgtcttcta gtctgactag atgtctgact gtggagatgg ttcctggttc
     1621 caccttacac tgctgatgtg acagttgatc acagagcggg aacatgggaa catggttgtc
     1681 accctcatag gctggttaca tgactgtgga gtatcaggcc cagattgaat gtgctactca
     1741 atgacctaga catggcacca tcagctcttc caccctgtgc attcacgggt attgttcccc
     1801 taactttccg gcatcatgga ccatgaagac gcagaacaaa accacaggag gggaaaaccc
     1861 gggactcttt ttctagggat ataaaaccta agagttaaca catacttcag tggagggagg
     1921 ccttgtctca agtcgaaaag gaaatgtatt cctcatcata ttagatatat tcaaattact
     1981 gaatatactg aatgttactg agtcttttca gaagcaaact tggggcaaaa gctttataat
     2041 atttagctca gtagccctta catgtgatta taaaaatgga aggtaacata ttgatgttgt
     2101 tgtaaatgtc ttcagccctc cctgaagtat tgctctttct tttttcttaa caagtgtgac
     2161 tgtgttcaag cctacttggc tcttgaccaa aattggacta ggtaagacca ttgatattta
     2221 tcaagagtga caagtagtgt tcctgccaaa ctagtatgca tgcatttctt acctccaaaa
     2281 taattttggt ttggagttaa aataatttaa cgtgagttgt gctatgtact acaaaaataa
     2341 aaagttagcc aagaggaaaa aaagtggttt tgaaagacat acatttagga ctgggttacc
     2401 aatctttcat acctcataaa cttcccatgg ttacttctga aaagttagtt ttgaagcatt
     2461 cctctttgcc ctgtatggct aagacccatt cattatttgt gaacaagagg ttgcaagcag
     2521 cagcagtgtg tgctacaaag tggtgttgac cggaatagga ctgtcaccac gccccaccac
     2581 tgtataccat aacctatttg aataaaatat gtttcatctt gctagatctc caaaacccag
     2641 gaaaagctct gttacgggac ctgtcccagt gttgtgggag ggctcctgca gattagcatc
     2701 ctctgctggg tgtgcttggc tgggtggatg tcaccataca attcctgtgc agatggcagg
     2761 tccgatacaa cgccatatac aagtttatgc tttcccctaa gttacctgca tagttctttg
     2821 ggtcaccagc tcactctcct taattgcatt gagattatga ataaagctgt cttccgaatt
     2881 tttacttaag aaggaaattg gtatttccaa gatcaattac ctttagatcc aaccagaaac
     2941 attgatgctt atttgagtaa gttagcagac ttttagaatg tatttggcgg tactcaaaga
     3001 agtaacttta gactgtttta tgtgttaaaa gcaattatca gtgcattgtg gagcagcagt
     3061 gagcttagtt ttaaacagca gaggttttag gcattgccaa tctcccgtca cctgcattag
     3121 gaaccagcat gcagcattta gagctctttt ttctgtcagg gttattctgc gtggtgtctc
     3181 agaaggagcg tttgtccctc atgtatacat tttatttttc tatttgtgtt aaatcttcgt
     3241 tctcgtgagc ttagtcagaa gtggaaaccg tagtctttac agcaagcaga gctccagccc
     3301 cctccctgtg gaagtgaagg tctgcatgag ttatcctcag aatcacctag tgtcagtgct
     3361 gttctacagt gagtgaagtc agccacagag cacatttaat atatggaacc tgtaaatatg
     3421 cagagtatag tatttgtgta tggaatctgt gcattatcat attttttcag ccatttggtg
     3481 aatatagtaa tatgttatta atggaaatta gatgattgct tctgaaggaa gataattatg
     3541 aaaataaaac ccaagactat gaa
//
