LOCUS       XM_006231863            5950 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NLR family, apoptosis inhibitory
            protein 6 (Naip6), transcript variant X6, mRNA.
ACCESSION   XM_006231863
VERSION     XM_006231863.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006231863.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006231863.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5950
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5950
                     /gene="Naip6"
                     /gene_synonym="Birc1; Birc1a; Birc1b; Naip; Naip2"
                     /note="NLR family, apoptosis inhibitory protein 6; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 59 ESTs, 35 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:191568"
                     /db_xref="RGD:621281"
     CDS             919..5130
                     /gene="Naip6"
                     /gene_synonym="Birc1; Birc1a; Birc1b; Naip; Naip2"
                     /codon_start=1
                     /product="NLR family, apoptosis inhibitory protein 6
                     isoform X1"
                     /protein_id="XP_006231925.1"
                     /db_xref="GeneID:191568"
                     /db_xref="RGD:621281"
                     /translation="MAAQGEAFEERICEFDDDLVSEFSTLLRVDALQVLKRQQEEDHK
                     TRMKMKKGFNAQMRSEAKRLKTFVTYDTFRSWTPQEMAAAGFYYTGVRHGVQCFCCSL
                     ILFATRLRKVPIEVHRKLQPECEFLSGKDVGNIGKYDIRVKSPETLPRGGRARYHEEE
                     ARLESFEDWPFYAHGTSPRVLSAAGFVFTGKRDTVQCFSCGGCLGNWEEGDDPWKEHA
                     KWFPKCEFLQSKKSAEEIAKYIQTYEGFLHVTGEHFVNSWVRRELPVVSAYSNDSVFA
                     NEGLRMDTFKDWPHESPMAVEALVKAGLFYTGKKDIVQCFSCGGCMENWKEGDDPIED
                     HTKFFPNCVFLQTLKSSAEVIPALQSHCARPEAMETTSESNHEDGVAVHSSVADLGQS
                     EAQWCQEARSLSEQLRGTYTKASFRHMNLPEAYSSLGTDHLLGCEVFLISKHVSRPVQ
                     VALTIPEVFANLSSVMCVEGEAGSGKTTFLKRIAFLWASGCCPLLNRFQLVFYLSLRS
                     IRADQGLADIICAQLLEAGGCISEVSLSSGIQHLQHQVLFLLDDYSGMDSLPQALDTL
                     ITKNYLSRTCLLMAVHTNRVRDIRPYLETVLQIKEFPFYNTVYILKKIFSHDIIRVRR
                     FINYFGFHEYLQGIHKTPLFVAGVCADWLQNPSDQPFQDVTIFKSYMQYLFLKHKATA
                     GPLQATVSSCGHLALTGLFSSSFEFSSDDLIEAGVDEDEELSTCLMSKFTAQRLRPVY
                     RFLSPLFQEFLAAMRLSELLGSDSQEDQDLGLYYLRQINSPLKAMSIYHTFLRYVSNH
                     PSSKAGPKVISHLLQLVDEKESPENTSENEDYMKLHPETLLWSQCLRGLLQLSPESFS
                     LFISERLLNIALNFAYQSNTVAACSPVILQFLQGRTLDLKVLNLQYFWDHPETLLLLK
                     SIQVLFNGNNRVQRIDFSLMDKSFEKIQPPTIDQDYAFAFQPMSECQRNLAEKENIIK
                     NYDDMKYQDPLNISSGYWKLSPKPYKIPRLEVGVNNMGPADQALLHVLMEVFSASQSI
                     EFHLFNSSGFLESIRPALELNKTSVTKCSMSRLELSRAEQELLLTLPALQSLEVSGTS
                     QIPDQLFHNLDKFLGLKELSVRLDGTQDMLSVLPGEFPNLHHMEKLSIHTSTESDLSK
                     LVKLIQNSPNLHDFHLKCDFLSNCESLMAALASCKKLREIEFSGRCFEAVPFVNILSN
                     FASLKILNLRNQQFPDKETSEKFAQALGSLRNLEELHLPTGDGIHQVAKPIVRRCLQL
                     PCLRVLVFAETLDDDSVLEIAKGATSGGFQNLENLDLTLNHKITEEGYRNFFQALDNL
                     PNLQNLDISRHIPECIQVQASTVKALGQCVSRLPSLTRLGMLSWLLDEEDMKVINDVK
                     ERHPQSKRLTVHWRWVVPFSPVIQK"
ORIGIN      
        1 tgttaaagaa tacttagcaa ctgtgtagac tgcattcctg aaccttgttt gaggcaacag
       61 gaaagccatg ccacttacgg ctcagcgctc aattgtggga cttctggctg ggtgttttcc
      121 acagagatct cggccctggg tgtctgtgag gggctgcagt tacgtgaacc cttgatctcc
      181 tgggaggctg ggaatgcgcc tgccatccct tttagggtct ctggagattc gacctatctt
      241 ggccaggaat caagatcata gctcctggac aggtgcacat gcatgcaact caacaggaac
      301 agaaagtggg tcgacaaaac cgcatgctag agtggtttct actccagggt gtatgaccta
      361 cctccccagc catgaactgt gcatgaggat tacaaaacca ggaaattccc ttccatagat
      421 tggcctcaaa tgtaatcaca atgaggtttg ctaccccaca accggcatgc cagtattgca
      481 caagtggaaa tccttggcct aggaatagtg acatagcttg cagagaccag ttctgagtaa
      541 tatcactgat gcctctccac aacttcctgc agcctgcata gcatcttctg gcactacaaa
      601 agctataaaa tataggtggg agctgtgtaa gctgcttaga ataaatcatt aaggtgaaga
      661 tccagttgta tcctgatgac ttcctaagag atcaaaacca ccatgtttag agatacatgc
      721 tggtttcctg ctcctgtcaa gccttctgtg ccaccatgaa atacagatct tcaaactggt
      781 agaatgggct acatgcaaga tgctaaaata agtactcaat caggataaag gacacttgca
      841 agatttcatg gatggattca ggaccctgtg actcactgcc aggccttgag gcccagctca
      901 ctgcttgaca cacagaaaat ggcagcccag ggagaagcct ttgaggagag aatttgtgag
      961 tttgatgatg acttggtctc tgagttctct actcttctcc gagtggatgc acttcaagtc
     1021 ttaaagagac aacaagaaga agaccataaa acacgaatga aaatgaagaa aggttttaat
     1081 gcacagatgc gcagtgaagc caaacggctg aagacttttg tgacctatga cacattcaga
     1141 tcatggaccc cacaggagat ggcagctgct gggttttact acacgggtgt gagacatggg
     1201 gttcagtgct tctgctgtag cttaatcctt tttgccacca gactcaggaa agttcccata
     1261 gaagttcacc ggaaattaca accagaatgt gagttcctct cgggcaaaga tgttggaaac
     1321 attggcaagt acgacatacg ggtgaagagt ccagagacgc tgccgagagg tggcagagca
     1381 aggtaccatg aggaggaggc cagactggag tcctttgagg actggccgtt ttatgcccat
     1441 gggacatcac ctcgtgtact ctcagctgct ggctttgtct tcacaggtaa aagggacact
     1501 gtgcagtgtt tctcctgtgg cggatgcttg ggaaactggg aagaaggaga tgatccctgg
     1561 aaggagcatg ccaagtggtt ccccaaatgt gaatttcttc aaagcaagaa gtccgcagag
     1621 gaaattgcca agtacataca aacctacgag ggatttcttc atgtaacggg agaacatttt
     1681 gtgaattcct gggtcagaag agaattacct gtagtatcag cttacagcaa tgacagtgtc
     1741 tttgctaatg aaggactaag aatggacacg tttaaggact ggccccacga atcacctatg
     1801 gctgttgaag ctctggtcaa agcaggtctt ttctacacag gcaaaaagga catcgtccag
     1861 tgtttctcct gtggaggatg catggagaat tggaaggaag gtgatgaccc aatagaagat
     1921 cacaccaagt tttttcccaa ctgtgtattt cttcaaaccc tgaagtcctc tgcagaagtg
     1981 attccagccc ttcagagcca ctgtgcacgt ccagaagcca tggaaaccac aagtgaaagc
     2041 aaccatgagg atggagtggc agttcattct tctgtagcgg acttgggtca gagtgaagcc
     2101 cagtggtgtc aagaggccag gagtctgagt gagcagctga gaggcaccta caccaaagcc
     2161 agtttccgac acatgaacct gcccgaggcg tattccagcc tcggcactga ccacttgctc
     2221 ggctgcgagg tgttcctcat ttcaaagcac gtcagccggc cagtgcaagt ggccctgaca
     2281 atccccgagg tcttcgccaa tcttagctct gtcatgtgtg tggaggggga agctggcagt
     2341 gggaagacca ccttcctgaa gaggatagct ttcctctggg catcaggatg ctgtcccctg
     2401 ttgaacaggt tccagctggt cttctacctc tcccttcgtt ccatcagagc agaccaggga
     2461 ctggccgaca tcatctgtgc ccagctccta gaggcaggag gatgcatcag tgaagtgagc
     2521 ctgagcagcg gcatccagca cttacaacac caggtcctgt ttctgttgga tgactacagt
     2581 gggatggact ccctccccca agccctagac acactgatta ccaaaaacta cttgtcacgg
     2641 acctgcttac tgatggccgt ccataccaac agggtcaggg acatccgccc atatctagag
     2701 acagttctac agatcaaaga gtttcccttt tataatactg tctatatatt aaagaagatc
     2761 ttctcacatg acataattcg tgtgcgaaga tttataaatt actttggatt tcatgaatat
     2821 ttacagggaa ttcacaaaac ccccctcttt gtggcaggag tatgcgctga ctggcttcaa
     2881 aatccatctg accagccctt tcaggatgtg accattttca agtcctacat gcaatacctg
     2941 ttcttaaagc acaaagctac agccgggcct ctccaggcca ccgtgtcctc ctgtgggcat
     3001 ctggccttga cagggctttt ctcatcgagc tttgagttca gtagtgatga cctcatagag
     3061 gcaggagttg atgaagacga agagctcagc acctgcttga tgagcaaatt caccgcccag
     3121 aggctgagac cagtctaccg gtttttaagt cctctgttcc aagagtttct tgctgccatg
     3181 aggctctcag aactcctggg gtcagatagt caagaagacc aagatctggg actgtattat
     3241 ttgagacaaa ttaactcacc tctgaaggcc atgagcatct accacacttt tttgaggtat
     3301 gtctccaacc acccttcatc aaaggcaggg ccaaaagtta tatctcattt gcttcagttg
     3361 gtggatgaga aagagtcccc ggagaacacg tctgaaaatg aggattacat gaagctccat
     3421 ccagaaactt tgctgtggag tcagtgtctt agagggctgt tgcagctgtc tcctgaatct
     3481 ttctctttgt tcatttcaga acgtttactg aacattgccc taaactttgc ttatcaaagc
     3541 aacacagttg ctgcatgctc tccagttatt ttgcagttcc ttcaagggag gacactggat
     3601 ttgaaagtac tgaatttaca gtacttttgg gaccacccag aaaccctgtt actattgaag
     3661 agtattcagg tcttatttaa tgggaataac agggtacaga gaattgattt ttctctcatg
     3721 gacaaatctt ttgaaaaaat acagccacca actatagatc aggactatgc ctttgccttt
     3781 caacctatga gtgaatgcca gagaaattta gctgaaaagg aaaacataat aaagaactat
     3841 gatgatatga aatatcagga tccactaaat attagtagtg gctattggaa actgtccccc
     3901 aagccttaca agatccctag gctggaagtt ggagtgaaca acatgggtcc ggcagaccag
     3961 gctctgctcc atgtcctaat ggaagtcttc tcagcctcac agagtattga gttccattta
     4021 ttcaacagca gtggctttct tgaaagcatc cgcccagctc tggagctgaa taagacctct
     4081 gtcaccaagt gttccatgtc caggctggag ctcagcagag cagaacagga gctgcttctc
     4141 accctgcctg ccctgcagtc tcttgaggtc tcaggaacaa gccagattcc agatcagctc
     4201 ttccataact tggacaagtt cctgggcctg aaagaactgt ctgtgagact agatggcaca
     4261 caggacatgc tctcagtcct tccgggagag ttcccaaacc tccatcacat ggagaagtta
     4321 tccatccaca cctccacgga gtctgacctc tccaaactag ttaaattgat tcagaactct
     4381 ccaaatctgc atgatttcca cctgaaatgt gatttccttt cgaattgtga gtctctcatg
     4441 gctgcgcttg cttcctgcaa gaaactcaga gagattgagt tttctgggcg atgctttgaa
     4501 gccgtgccct ttgtcaacat tttgtcaaat tttgcttctt tgaagatatt gaatcttaga
     4561 aaccaacaat tcccagataa ggaaacatca gaaaagtttg cccaggctct gggttctctc
     4621 aggaacctgg aggaactgca ccttcccact ggggatggga tccaccaagt ggccaaaccg
     4681 attgtccggc ggtgtctgca gcttccctgt ctccgagttc tcgtctttgc agagacattg
     4741 gatgatgaca gtgtgctgga aattgccaag ggagcaacca gtggaggctt ccaaaatctg
     4801 gagaacttag acctcacact gaatcacaag attactgagg aaggctacag gaatttcttt
     4861 caagccctgg acaacctgcc aaacctgcaa aatctggaca tctccaggca tatcccagaa
     4921 tgcatccaag ttcaggccag caccgtcaag gctctgggtc agtgtgtgtc ccgactgccc
     4981 agcctcacca ggctggggat gctcagttgg ctgctggatg aagaggacat gaaagtgatt
     5041 aatgacgtga aggaaagaca ccctcagtcc aaacgcctga ctgtgcactg gaggtgggtg
     5101 gtgccgttct ctcctgtcat tcagaagtga aggatgcagg ggcagcctac tggcaggtct
     5161 aaaaccctgt tttcaaatac atttcactct agacaggcat ggcgtaatcc tagtacttag
     5221 actgagcagg agggtcaaga gtttgggtcc agcctgggct atgtgacaat actttagacc
     5281 ccaatcaaaa ccaaatcgtt tactattcat atacaaaata ttcttgaact gtatcaggct
     5341 ggtaactatt tgaggcctgc acgcctacac caagctatga tgccttggca gtcctcgtat
     5401 ggtccctctt gtacaaagac tagagcttca ggcaagttca cacagagaac cctccattat
     5461 ccagatcaat agaagggggc tgtggaaaga aacattgatc tatgtcaaga ctacattgtg
     5521 gaaggaatga tccacataag taagaaacgg ccagtttaag gattgaatca gttccacatc
     5581 tgatgagacg ggagttgact tcaccacagg atgcagcgaa ctctctccgg gaggtgatct
     5641 ttggtttttg taagacttct gtgtgttcac cagtcttggt gtggccatgt ttgtttacac
     5701 cgtctcttac ctatttgaaa acatgggctt agagaaaact gcctttgttc caggggcttt
     5761 ggggagttat ttttgttagg atagctttat aattttgttg gaaacccagt ctgttcaggg
     5821 tatatgattt aatcttgtaa ggatttctgg gtatattaac ttgggtgtga gaattgtcat
     5881 ttcataactg tcacctctct agaagcaggg ggacctggga gaatggagcc aataaatgca
     5941 gtggacgaaa
//
