LOCUS       XM_039086258            1739 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus N-acetylglucosamine-1-phosphodiester
            alpha-N-acetylglucosaminidase (Nagpa), transcript variant X2, mRNA.
ACCESSION   XM_039086258
VERSION     XM_039086258.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039086258.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1739
                     /gene="Nagpa"
                     /note="N-acetylglucosamine-1-phosphodiester
                     alpha-N-acetylglucosaminidase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 51 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:360476"
                     /db_xref="RGD:1308972"
     CDS             34..1167
                     /gene="Nagpa"
                     /codon_start=1
                     /product="N-acetylglucosamine-1-phosphodiester
                     alpha-N-acetylglucosaminidase isoform X1"
                     /protein_id="XP_038942186.1"
                     /db_xref="GeneID:360476"
                     /db_xref="RGD:1308972"
                     /translation="MAAPRGPGLFFKPALLGLLGVAWCSLGFGVSRDDDLLLPYPLAR
                     RRPSRDCARVHAGSPEQESWPPPPTNPGASHRAAVRTFVSHFEGRAVAGHLTRVADPL
                     RTFSVLEPGGPGGCAQRRRATVEDTAVPAGCRVAQNGGFFRMGTGECLGNVVSDGRLV
                     SSSGGLQNAQFGIRRDGTLVTGYLSEEDVLDTVNPFVQLLSGVVWLIRNGSIYINESQ
                     ITECDETQETGSFSKFVNVMSARTAVGHDRKGQLILFHADGQTEQRGLNLWEMAEFLL
                     KQDVVNAINLDGGGSATFVLNGTLASYPSDHWTTWLALTLILIFLLLISTAVNVSLLL
                     GSRAERNRHLDGDYVYHPLQEVNGDALAAEKEQTEETCNPFKD"
ORIGIN      
        1 ggcgagccca cgtgaccgga gcaccaagcc aatatggcgg cgcccagggg gccggggctg
       61 ttcttcaaac ccgcgctgct cggtttgctt ggggtggcgt ggtgcagctt aggcttcggg
      121 gtttcccgag acgatgacct gctgctgcct tacccactcg cgcgcagacg tccctcgcgg
      181 gactgcgccc gggtgcacgc aggcagccca gaacaggaga gctggcctcc gccacccacg
      241 aaccccggcg ccagccaccg cgcggccgtg cgcacctttg tgtcgcactt cgagggacgc
      301 gcggtggccg gccacctgac gcgggtggct gaccccctac gcactttctc ggtgctggag
      361 ccgggaggac ccggaggctg cgcgcagagg cgtcgcgcta ctgtggagga cacagccgtc
      421 ccggccggtt gccgcgtcgc tcagaacggt ggcttcttcc gcatggggac tggcgagtgc
      481 ttggggaatg tggtgagcga cgggcggctg gtgagcagct ctgggggact gcagaacgct
      541 cagttcggta tccgacgcga cgggacctta gtcaccgggt acctgtctga ggaggacgtc
      601 ctggacacgg tgaacccatt cgtgcagcta ctgagcggag tggtatggct catccgtaat
      661 ggaagcatct acatcaacga gagccaaatc accgagtgcg atgagacgca ggagacaggt
      721 tctttcagca aatttgtgaa cgtgatgtca gccaggacag ccgtgggtca tgaccgtaag
      781 gggcagctta tactcttcca cgcggacgga cagacggagc agcgtggcct caacctgtgg
      841 gagatggcag agttcctgct gaaacaagac gtggtcaatg ccatcaacct ggatggaggc
      901 ggttctgcca cctttgtgct caatgggacc ctagccagtt acccctcaga tcactggacc
      961 acgtggctgg cacttaccct catcctaatt ttcctgctgc tgatcagcac ggccgtcaac
     1021 gtgtccttgc tcctgggctc cagggcagag aggaaccggc acctcgacgg ggactacgtg
     1081 taccacccac tgcaggaggt gaacggggac gcgctggctg cagagaagga gcaaacagag
     1141 gaaacttgca accccttcaa ggactgacgg agagctaggc tgccccagtg gtatgctgca
     1201 gatagtcttg tccctgctcc tcacctttac aggggcagtt gtgaggccac tggcatggat
     1261 gctgtgcacc ccgccccttg cctgaccatg tggcccctgt ccccgtgctg cggctcacgc
     1321 caccccagca atacggagct ctggagagcc tgcacctgct tccctgcctg cctgtatctg
     1381 ctgcccagag gcctgtctcc cacaggggtc tcgccactgc caaagactcc caggaagcca
     1441 cttgcaaatg gaactctgtg gcccaggcat gacaaaagtg gccactctgc tgggccacct
     1501 gcacaggggt ggaatgaaag acttaccccg ggctcagcca cggcgcgtgg ccgcctctat
     1561 gcagcctcat cgctggaccg ccagctagaa ctctgcatct tgtcacagga ggcccctcat
     1621 aagaagggat ggggagggaa ggaagtcgcc atgtttacag acctattttt gttgtcttgc
     1681 tccctaaagg agttttctaa cacttgaata aattgggata ctaaaacgag ccaccacca
//
