LOCUS       NM_001108265            2140 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus N-acetylglucosamine-1-phosphodiester
            alpha-N-acetylglucosaminidase (Nagpa), mRNA.
ACCESSION   NM_001108265 XM_001076706 XM_340751
VERSION     NM_001108265.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Boonen M, Vogel P, Platt KA, Dahms N and Kornfeld S.
  TITLE     Mice lacking mannose 6-phosphate uncovering enzyme activity have a
            milder phenotype than mice deficient for
            N-acetylglucosamine-1-phosphotransferase activity
  JOURNAL   Mol Biol Cell 20 (20), 4381-4389 (2009)
   PUBMED   19710420
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474017.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_340751.3, XM_001076706.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168968.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..2140
                     /gene="Nagpa"
                     /note="N-acetylglucosamine-1-phosphodiester
                     alpha-N-acetylglucosaminidase"
                     /db_xref="GeneID:360476"
                     /db_xref="RGD:1308972"
     exon            1..117
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..1585
                     /gene="Nagpa"
                     /EC_number="3.1.4.45"
                     /codon_start=1
                     /product="N-acetylglucosamine-1-phosphodiester
                     alpha-N-acetylglucosaminidase"
                     /protein_id="NP_001101735.1"
                     /db_xref="GeneID:360476"
                     /db_xref="RGD:1308972"
                     /translation="MAAPRGPGLFFKPALLGLLGVAWCSLGFGVSRDDDLLLPYPLAR
                     RRPSRDCARVHAGSPEQESWPPPPTNPGASHRAAVRTFVSHFEGRAVAGHLTRVADPL
                     RTFSVLEPGGPGGCAQRRRATVEDTAVPAGCRVAQNGGFFRMGTGECLGNVVSDGRLV
                     SSSGGLQNAQFGIRRDGTLVTGYLSEEDVLDTVNPFVQLLSGVVWLIRNGSIYINESQ
                     ITECDETQETGSFSKFVNVMSARTAVGHDRKGQLILFHADGQTEQRGLNLWEMAEFLL
                     KQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRRVSTVVCVHEPRCQPPN
                     CSGHGTCVDGRCECTSHFWHGEACSELNCGPSNCSQHGLCTETGCRCDAGWTGSNCSE
                     ECPLGWYGPGCQRPCQCEHQRPCDPQTGNCSISQVKQCLQSTEAPPRAGGLASFTGTT
                     WLALTLILIFLLLISTAVNVSLLLGSRAERNRHLDGDYVYHPLQEVNGDALAAEKEQT
                     EETCNPFKD"
     exon            118..576
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            577..716
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            717..825
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            826..954
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1160
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1208
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1310
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1374
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
     exon            1375..2140
                     /gene="Nagpa"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgagcccacg tgaccggagc accaagccaa tatggcggcg cccagggggc cggggctgtt
       61 cttcaaaccc gcgctgctcg gtttgcttgg ggtggcgtgg tgcagcttag gcttcggggt
      121 ttcccgagac gatgacctgc tgctgcctta cccactcgcg cgcagacgtc cctcgcggga
      181 ctgcgcccgg gtgcacgcag gcagcccaga acaggagagc tggcctccgc cacccacgaa
      241 ccccggcgcc agccaccgcg cggccgtgcg cacctttgtg tcgcacttcg agggacgcgc
      301 ggtggccggc cacctgacgc gggtggctga ccccctacgc actttctcgg tgctggagcc
      361 gggaggaccc ggaggctgcg cgcagaggcg tcgcgctact gtggaggaca cagccgtccc
      421 ggccggttgc cgcgtcgctc agaacggtgg cttcttccgc atggggactg gcgagtgctt
      481 ggggaatgtg gtgagcgacg ggcggctggt gagcagctct gggggactgc agaacgctca
      541 gttcggtatc cgacgcgacg ggaccttagt caccgggtac ctgtctgagg aggacgtcct
      601 ggacacggtg aacccattcg tgcagctact gagcggagtg gtatggctca tccgtaatgg
      661 aagcatctac atcaacgaga gccaaatcac cgagtgcgat gagacgcagg agacaggttc
      721 tttcagcaaa tttgtgaacg tgatgtcagc caggacagcc gtgggtcatg accgtaaggg
      781 gcagcttata ctcttccacg cggacggaca gacggagcag cgtggcctca acctgtggga
      841 gatggcagag ttcctgctga aacaagacgt ggtcaatgcc atcaacctgg atggaggcgg
      901 ttctgccacc tttgtgctca atgggaccct agccagttac ccctcagatc actgccagga
      961 caacatgtgg cgctgtcccc gccgtgtttc cactgtggta tgtgtgcatg aaccccgctg
     1021 ccagccaccc aactgcagcg gccatgggac ctgtgtggat ggccgttgtg aatgcaccag
     1081 ccacttctgg cacggtgaag cctgcagtga gctgaactgc ggcccctcca actgcagcca
     1141 gcatgggctc tgcacagaga ctggctgcag gtgtgatgct gggtggacag gatccaactg
     1201 cagtgaagag tgtcctctgg gctggtatgg gccaggttgc cagaggcctt gccagtgcga
     1261 gcaccagcgt ccctgtgacc cccagactgg caactgcagc atctcccaag tgaagcagtg
     1321 tctccagtca actgaggccc caccgagggc aggagggctg gcctctttca ccgggaccac
     1381 gtggctggca cttaccctca tcctaatttt cctgctgctg atcagcacgg ccgtcaacgt
     1441 gtccttgctc ctgggctccc gggcagagag gaaccggcac ctcgacgggg actacgtgta
     1501 ccacccactg caggaggtga acggggacgc gctggctgca gagaaggagc aaacagagga
     1561 aacttgcaac cccttcaagg actgacggag agctaggctg ccccagtggt atgctgcaga
     1621 tagtcttgtc cctgctcctc acctttacag gggcagttgt gaggccactg gcatggatgc
     1681 tgtgcacccc gccccttgcc tgaccatgtg gcccctgtcc ccgtgctgcg gctcacgcca
     1741 ccccagcaat acggagctct ggagagcctg cacctgcttc cctgcctgcc tgtatctgct
     1801 gcccagaggc ctgtctccca caggggtctc gccactgcca aagactccca ggaagccact
     1861 tgcaaatgga actctgtggc ccaggcatga caaaagtggc cactctgctg ggccacctgc
     1921 acaggggtgg aatgaaagac ttaccccggg ctcagccacg gcgcgtggcc gcctctatgc
     1981 agcctcatcg ctggaccgcc agctagaact ctgcatcttg tcacaggagg cccctcataa
     2041 gaagggatgg ggagggaagg aagtcgccat gtttacagac ctatttttgt tgtcttgctc
     2101 cctaaaggag ttttctaaca cttgaataaa ttgggatact
//
