LOCUS       NM_001014216            2288 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus nucleic acid binding protein 1 (Nabp1), mRNA.
ACCESSION   NM_001014216 XM_343565
VERSION     NM_001014216.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Gu,P., Deng,W., Lei,M. and Chang,S.
  TITLE     Single strand DNA binding proteins 1 and 2 protect newly replicated
            telomeres
  JOURNAL   Cell Res 23 (5), 705-719 (2013)
   PUBMED   23459151
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Li,Y., Bolderson,E., Kumar,R., Muniandy,P.A., Xue,Y., Richard,D.J.,
            Seidman,M., Pandita,T.K., Khanna,K.K. and Wang,W.
  TITLE     HSSB1 and hSSB2 form similar multiprotein complexes that
            participate in DNA damage response
  JOURNAL   J Biol Chem 284 (35), 23525-23531 (2009)
   PUBMED   19605351
REFERENCE   3  (bases 1 to 2288)
  AUTHORS   Huang,J., Gong,Z., Ghosal,G. and Chen,J.
  TITLE     SOSS complexes participate in the maintenance of genomic stability
  JOURNAL   Mol Cell 35 (3), 384-393 (2009)
   PUBMED   19683501
REFERENCE   4  (bases 1 to 2288)
  AUTHORS   Richard,D.J., Bolderson,E., Cubeddu,L., Wadsworth,R.I., Savage,K.,
            Sharma,G.G., Nicolette,M.L., Tsvetanov,S., McIlwraith,M.J.,
            Pandita,R.K., Takeda,S., Hay,R.T., Gautier,J., West,S.C.,
            Paull,T.T., Pandita,T.K., White,M.F. and Khanna,K.K.
  TITLE     Single-stranded DNA-binding protein hSSB1 is critical for genomic
            stability
  JOURNAL   Nature 453 (7195), 677-681 (2008)
   PUBMED   18449195
REFERENCE   5  (bases 1 to 2288)
  AUTHORS   Kang,H.S., Beak,J.Y., Kim,Y.S., Petrovich,R.M., Collins,J.B.,
            Grissom,S.F. and Jetten,A.M.
  TITLE     NABP1, a novel RORgamma-regulated gene encoding a single-stranded
            nucleic-acid-binding protein
  JOURNAL   Biochem J 397 (1), 89-99 (2006)
   PUBMED   16533169
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001014216.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089852.1, SRR26643294.36251.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-272               JAXUCZ010000009.1  57618941-57619212
            273-411             JAXUCZ010000009.1  57619422-57619560
            412-483             JAXUCZ010000009.1  57621224-57621295
            484-559             JAXUCZ010000009.1  57622423-57622498
            560-611             JAXUCZ010000009.1  57623103-57623154
            612-2288            JAXUCZ010000009.1  57624250-57625926
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..2288
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /note="nucleic acid binding protein 1"
                     /db_xref="GeneID:363227"
                     /db_xref="RGD:1306658"
     exon            1..272
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..778
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /note="SOSS-B2; sensor of ssDNA subunit B2;
                     single-stranded DNA-binding protein 2; sensor of
                     single-strand DNA complex subunit B2;
                     oligonucleotide/oligosaccharide-binding fold-containing
                     protein 2A; oligonucleotide/oligosaccharide-binding fold
                     containing 2A"
                     /codon_start=1
                     /product="SOSS complex subunit B2"
                     /protein_id="NP_001014238.1"
                     /db_xref="GeneID:363227"
                     /db_xref="RGD:1306658"
                     /translation="MHGVNDPPLFIKDIKAGLKNLNVVFIVLEIGRVTKTKDGHEVRS
                     CKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEF
                     CMVYSEVPNFSEPNPDYRGQQNRVVQNEQKDKMNTSIFGTVGNGVQTGPESRGYPLQY
                     GRSNGPGPISPQLPGEPSNQTVRTTISNARDPRRAFKR"
     exon            273..411
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
     exon            412..483
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
     exon            484..559
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
     exon            560..611
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
     exon            612..2288
                     /gene="Nabp1"
                     /gene_synonym="Obfc2a; RGD1306658"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttttttttc cccctttcgg cttggcgcct ctagggctgg tttccccggc ccctgaataa
       61 ccgcttcccg actctggtcg ccaggcctgc ctcaggttgc ccccggctct gcccctggcc
      121 tcggagggtg ggaagccttg cttagagggt ctctgaagct tagccgcacc tgcctctcag
      181 tatgcatggg gtcaacgacc ctcctctttt tataaaagac attaaggccg gactgaaaaa
      241 cttaaatgtc gtctttattg tcctggagat aggacgagtg accaaaacca aagacggcca
      301 tgaagtgaga tcctgcaaag tagctgatag aacgggaagc atcactattt ctgtgtggga
      361 tgagatcgga gggctcatac agacagggga tattattcga ttgaccagag gatatgcatc
      421 aatgtggaaa ggatgcctga cactttatac tggaagaggt ggtgaacttc aaaaaattgg
      481 agaattttgt atggtgtatt cagaagtgcc aaatttcagt gagccaaacc cagattatag
      541 aggacagcag aacagagtgg tacaaaatga acagaaggat aaaatgaaca ccagtatatt
      601 cgggacagtg ggaaatggtg ttcagactgg ccctgaatct aggggatatc ctcttcaata
      661 tggcagaagc aatggcccag gacccatcag tccacagcta ccaggagaac ctagtaatca
      721 aacagtcagg accacaataa gtaatgccag agatccgagg agagccttta aaagatgacc
      781 taagccaaag agacacatgt agtttttaaa ctacgtgacc tacttgaaca cttagtgcac
      841 ttttatttat tcttaactgt gaaaactttg tctcttacgg gtttcctttt atatttttgg
      901 tttgttaaaa agagtggttg gtttttactg aaaaactgtt acgctgctca gttccatcct
      961 gttgaagaat aggaactctg aaaagcagga acatttattt ttagagcaag gacttactgg
     1021 gtatcacttg aaaacttgtc cctgtttcaa gggcgagtta cttaagacac cagcttatat
     1081 atagcttctg tgagtctggc ttctgcataa actttgtaat gtttgccatg aggtttagtg
     1141 gaaaatgttc ttttgtctca aacttggata ttgctacctg aagtaataaa caccccaagc
     1201 cagaaacttg gtcagtgctg gcaacatttt ttgagtgttt gtgatccagg aatcctagag
     1261 tgaccgcctg ccattaagat ttttccaagg acagagtcat cccaaactct tgtttaatta
     1321 ccagataacc agattcttta tcagaattat ggaataaaat atgtactgta acaaataatt
     1381 tttagaagaa aactgtttaa gataatgctc ttaacatttt tttttgcaaa cattgaagat
     1441 tacattgaag aaaaatttac aactgagtcc ctgaatgttt tatttttgaa gttaccatgt
     1501 taaatgttaa agtgtcattg gagggattga aggaagctat aataccttat tggacagtgg
     1561 tctcatttat taaagctgtg cagcacaaca caaggctaat ctgattattt aaaaaaagaa
     1621 caaatactca tggtagttat tgtagtaaat acaagtcaaa ttgaattcat atagccatgt
     1681 gaccaccagt tacaagtagt cagttagaag tagacattcc tttcttccag ggctgtgtgt
     1741 gtgtaaagtt tctgaacaag tcacatagcc ttactagcaa aagttaaatg gctcaagaag
     1801 tgatgatacc tctgttaagg tgcaatttgt gtggtgggac ttgacttatg gtgggtaatt
     1861 ggtaattttt ttcattgtta gtatttgtct ctccttaaat attgtctctt gagtaaaaac
     1921 cttgctctaa tgatgacata tctacctacc tttttttact ctcagtaaac atggagagct
     1981 cagtccattt tactgaagtt gtaatcagct tcagtctggc tgctccccag ttttgtacgt
     2041 gtcatttctc cttacctcat attgtaaaat aagtaagctt ttgttcaact tctatagcat
     2101 ttgaatacaa tttgtgtcag gttctgatct aattcagttt aacagatttt cagtgtgcac
     2161 tgtagcaggc tttgtgtggt gattatcata gcattttgag aagtcacaag gagtttactt
     2221 tggtttatag gtacagggct ttgatatttg tcatttgttc atatattaat aattactgct
     2281 gatttgga
//
