LOCUS       XM_008763911            7361 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myb-like, SWIRM and MPN domains 1
            (Mysm1), transcript variant X1, mRNA.
ACCESSION   XM_008763911
VERSION     XM_008763911.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763911.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008763911.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7361
                     /gene="Mysm1"
                     /note="myb-like, SWIRM and MPN domains 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 29 ESTs, 3 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:298247"
                     /db_xref="RGD:1311787"
     CDS             234..2669
                     /gene="Mysm1"
                     /codon_start=1
                     /product="deubiquitinase MYSM1 isoform X1"
                     /protein_id="XP_008762133.1"
                     /db_xref="GeneID:298247"
                     /db_xref="RGD:1311787"
                     /translation="MEAEEADVDVEGDVAAAAQPGNDGNTASVFQDHYLDSTWRRENG
                     CLPWTLDSTISDENRAVIEKMLLEEEYYLSNKSLPGKFWVNQKENDKKCTNSLQKTGK
                     IMVRSPAKPSSYSVKWTIEEKKLFEQGLAKFGRRWTKIAALVKSRTVLQVKSYARQYF
                     RNKVKWGAEKETPTLKSNSDLQVKNKDERTKVWVASDPNLNAVKIEKLSDDEDVDITD
                     ELDELTSQTSQKNYGGHLTLDVPSSKMYKTNQGELCQEGSLAKSAEENLQNVKQSEAE
                     ACSSSEIMSWAEKQNNNGKNSVELNEKYSKLVEEYTMLTEETKHSPSPEPCEGQKDPR
                     GNELLLPPCQVEEENHEGEELKPPEQEVEIDRNVIQEEEKQAIPEFFEGRQTKTPERY
                     LKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAI
                     YNRPQPVDKVRVTDRKDAEAAYQLAWRLQSMRTRRRRVRDPWGNWCDAKDLEGQTFEH
                     LSVEELARREEEEKCKPIKFSKASKLPKSSLDPFQLIPCHFFSGEKQEPFQVKVASEA
                     LLIMDLHAHVSMAEVIGLLGGRYSEADKVLEVCAAEPCNSLSTGLQCEMDPVSQTQAS
                     ETLALRGCSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRSN
                     PLPYSQITCLVISEELSPDGTYRLPYKFEVQQMLEEPQWELVFEKTRWIIEKYRLSHS
                     SVPMDRIFRRDSDLTCLQKLLECLRKTLSKVANCFIAEEFLTQVENLFLSNYKSKEEN
                     GLAEENSAKELFM"
ORIGIN      
        1 agaaaaattt gaaggacgta gtggcaactc tgggccagaa ctccaggatg gctgcagtaa
       61 cccagagccg aacacagctg gcagccattt taaaggcaag aaggacacct aaaccaaatg
      121 tccattagac ctttccccgg aagtgcgcca caccacaggc cccgcctccg gtcccgcccc
      181 cgacccgccg catctcgcgg gatctcacga gtacgcctgt gtcaagtgca gtcatggaag
      241 ctgaggaggc ggatgtggat gtggagggag atgtggcggc ggcagcacag ccgggaaatg
      301 atggaaatac agcatcagtt tttcaagatc actatcttga ttcaacatgg agaagggaga
      361 atggctgtct tccttggact ctggatagca ccatcagtga cgaaaacaga gctgtcattg
      421 agaaaatgct gttggaagaa gagtattatt tatctaataa atcacttcca ggaaaattct
      481 gggttaatca aaaggaaaat gataaaaaat gcacgaacag cctacagaaa acaggaaaga
      541 tcatggtacg ttctcctgca aaaccatcca gttattcagt aaagtggacg atagaagaga
      601 aaaaactgtt tgaacaagga ctggctaaat ttggccgaag atggaccaaa atcgcagcac
      661 tagttaaaag tcgcacagtt ttacaagtga agagttatgc cagacaatac ttcagaaata
      721 aggtaaagtg gggtgcggag aaagaaacac caactttgaa gagcaacagt gatcttcagg
      781 ttaaaaataa agatgaaagg acaaaggtgt gggtcgcatc agatcccaac cttaatgctg
      841 taaaaataga gaagttgtct gatgatgaag atgtagacat caccgatgag ctggatgagt
      901 tgacttctca aacatcacaa aagaattatg gcggccatct tactttagat gttcctagta
      961 gtaaaatgta taagaccaac caaggagaat tatgccaaga aggttcatta gctaaatctg
     1021 cagaagaaaa tcttcagaat gtgaagcaaa gtgaagcaga agcatgttca agctcagaaa
     1081 ttatgtcatg ggctgaaaaa caaaataata atggcaaaaa ctcagttgaa ttaaatgaga
     1141 aatacagtaa actggttgag gaatacacta tgctaacaga ggaaaccaag cactcacctt
     1201 ctccagagcc ctgtgagggt cagaaggacc cacgtggaaa tgaactgctt ttgcctcctt
     1261 gccaagtgga ggaggaaaac catgaaggag aagagcttaa gccaccggaa caagaagtag
     1321 aaatagatag aaatgtcatt caagaagaag aaaagcaagc aattcctgag ttttttgagg
     1381 ggcgtcaaac taaaacacca gaacgctatt tgaaaattag aaactacatt ttggatcagt
     1441 gggaaatatg caaaccgaaa tacttaaata agacctcagt acgtcctggc ctgaagaact
     1501 gtggggatgt taattgtatt ggacggattc atacatacct cgagttgata ggagcaatca
     1561 attttggatg tgagcaggcc atatacaaca ggccacaacc agttgataaa gtccgagtga
     1621 ccgacagaaa agatgcagaa gcagcatacc agcttgcctg gcgcctgcag tccatgagaa
     1681 caaggagacg tagggtccga gatccatggg gaaactggtg tgatgcaaaa gacttagaag
     1741 ggcaaacatt tgagcatcta tctgtggagg agttggcaag aagagaagag gaggaaaagt
     1801 gcaaacctat taaattttca aaagcttcaa aacttcccaa aagctcactt gatcccttcc
     1861 aactgatacc ttgtcatttt ttcagtggag aaaagcagga gccatttcag gtgaaagtag
     1921 cttcagaagc acttttaata atggatctgc atgcccacgt gtctatggca gaggtgattg
     1981 ggcttttagg aggaagatac tcagaagctg ataaggtcct tgaagtctgt gcagcagagc
     2041 cgtgtaacag tctgagtaca ggacttcagt gtgagatgga ccctgtctca cagacacagg
     2101 cctcagaaac cttggctctc agaggctgca gtgttattgg gtggtaccat tctcatcctg
     2161 cgtttgatcc taatccgtct ttacgcgata ttgacacaca agccaaatac cagagttatt
     2221 tctccagagg aggagcaaag ttcattggaa tgattgttag tccatataat cgaagtaatc
     2281 ctttaccata ttcccagatt acctgcttgg ttataagtga agaacttagc cctgatggta
     2341 cctatcgttt accttacaaa tttgaagtac aacagatgtt agaagaacct cagtgggaat
     2401 tagtgtttga gaagacaaga tggataatcg aaaaatacag gctctctcat agcagcgtcc
     2461 ccatggatag aatatttcgc cgtgattctg acctaacttg tctgcagaaa cttttggagt
     2521 gtctaaggaa aacactaagc aaagtagcca attgtttcat cgctgaggaa ttcttgactc
     2581 aagttgaaaa tttgttcctt tccaattaca aaagcaagga agaaaatgga ctggcagaag
     2641 aaaacagtgc aaaggaattg ttcatgtaat tattttaaag taagatgttc taatcttggc
     2701 atgctattgt aaataattga gatttttaaa gcaatataaa ttatgtattt ttttctgtta
     2761 atccataaaa ctctaaactt tcccacataa ataatgtgtg aaggaagaga gattggcttg
     2821 ttcttagagt agtaatcaag agtggtaggt agacccctgc ctatattaag cggcgcagtg
     2881 ggccatgatg gcttgagctc tggccagctt tacggtgtgc agcttgataa gtagactatg
     2941 gctaaacttg gcttcttctc cgaaggagtc tgtttcttac attggcatct tatctcagac
     3001 atactttctc cccacatgtt ccccacatga ggggtgtgtg tgtgtgtgtg tgtgtgtgtg
     3061 tgtgtgtgtg agagagagag agagagagag agagagagag agagagagag agagagagag
     3121 gtggggggag ggagatttgg ctatttgggt gttgcagcct aggtgtggaa caggttaatg
     3181 tggttgagaa ctactgacta ataatcggac aacatgctct gaagtgccag cactgcaaag
     3241 ggggaatacc cttagaaatg ttcagacagg gagaccaaaa ggaagaagga ccaaccttca
     3301 gtctgctgca tctgcttcag tcttattgtg aaccactata ctgtaccata gtcagcctcc
     3361 tcagggattt aaatgtttaa atgaaaagta accttttttc atgtacaatt caaatcgttc
     3421 atgtactatt agtgaatatt tctgctagct ggagaactgg tggttcccct tgtccacgcc
     3481 ttcctattgg tgacagtttt gttatatgga aactaaatgt gagcttagag ttttctcttt
     3541 tgctgctgtt gtagttacag ccacagaagg aggtagccct ggatggagcg gctgctgtct
     3601 taggtggcct gagtctgatt tgggctgtgt gatttttaga aatggacttt gctttctcta
     3661 ggccaagttt gttttatgca gctgaggcta atcccaccct gagtgttgct ctagctctgg
     3721 tttatctgct gacttgttgg gctacacctt tggaacttca ctttcagatt gtgtgggccc
     3781 caaattaaca tgtagtttac aagaaagcca gcagtttctc catttccctc tgtacattta
     3841 gtacaaacaa tgaaacatac tttgtaaaag tcctcttgaa gtctagaagt ataaaactca
     3901 gagcaaataa tcaggagtcc tgagctctca cctaatctgc tcagctctgg tacctgacct
     3961 tgctccaccc tcagctccct aaactcagca gctgagaccc aatgagctaa attctgtcac
     4021 ttggtgtctc tgcaagccca gaaggctaca aaagtcagta gcagctttcc ttcccttcac
     4081 ctgtctgctc acaggtgctg gaacagacct gaaagggatg gtagttaact ttcttgctgt
     4141 tttccagaat gatgttgaat tttaaaaagt tctttcttaa atttgggctt tacacacacc
     4201 aatggttaac tgtattcact gagctataca ttgcaagaac tcaagggata gcagtagtca
     4261 gagtgtaggg ccttgagaac agaacttttt aagcaactat taagaaaaaa acaactatct
     4321 tctgactata gaatatattt gtaatttatc ttatggaata tttaaataca gagaaatata
     4381 tgcaaagtat agatatctca aatctactgt tgagaaaata ttttacatag gaattaaatt
     4441 cttaaccagt ttttaacagc gtaaattcag aacactcaga gttaccgttt gtctgctttt
     4501 gtttcctgtc tgttctctgt gccgccctct tttctcttgt cctagtgtct acacttgggc
     4561 agctgccgat ggccgctctg ccaaccttgg cctcctgaga atagttagag ccaagaccct
     4621 aaagaagcac aaatgagtct ggaacttgag ggggcatata acacagaagc tcctgaaaga
     4681 gagagagaga gagagagaga gagagagaga gagagaaagg cccatttcaa cagtgtttgc
     4741 agaagtggag gaccagagat gcccaagtct cttcgtccta aattctgttt ttattgatgc
     4801 atacagctgt aaaatgagct taaattttgt ttcttattct gacatggcta aggaaactta
     4861 ataatacttc tatattagac ttactgttat cgcgtctcag ccttttgact aagatcaagt
     4921 gtagacttat tgttcttcaa aattaatact caagacagcc aaatcagtga aacaagacca
     4981 gtaaggtgaa gctccatggc tgtcgtttaa ccttggccat tttttccctg tccatttaaa
     5041 tggcctagaa ctcccactct tagagttggt ttggccacat gctcaacact catgaggttt
     5101 taggcaccat gcacttttgc tcatttggac cccttcctta gagaatttaa aattatgttt
     5161 tataattgtg ttttataaca tgacagtatt cacattttaa ttaaaatatt cttttaattt
     5221 aaaaattggg ttatttttcc taataaaatt aagtaaaacg tttgttacac accctttaaa
     5281 attctgagtc tagattgtgc ctgtgttctg agagggttgt tggagaatgc agacagtgtt
     5341 ctccctccct taccaccact ccgttattta ttgccactcc agccaggggt actgcagctc
     5401 ctactatcac aggcctgcac atctgaactt cattctttcc catcctagcc agaactcagt
     5461 atggcttaga tcattcatgg gaggtgggga gtgcagcagc tagaaatcag tagataggaa
     5521 ttttactttg gttcctactt ttacagcctg tgtctcacct tcccttttct ctcaaaccct
     5581 catattcatc cattctcaca gcccatgagt ctaagagctt tctgtcattt gctgaaagta
     5641 cttaagcagg cccattcagg acatcccgca gttgtttatg gtttagcatt ggcccgggcg
     5701 tctccacaga atgttcctcc tcaggctggg gtaggtgagg tctgtgacat gcagactgta
     5761 agcacatgca gtcgcttcat ttctcaggac agagaaaatg gcagccttgg ctttccagtg
     5821 aaagccatct actgccctta gtctgccttc cccgggtgtg ttgccgagtc ctggcggaag
     5881 gagctggaga agccgataga acctgtatgc gctctgctct ggctctgctc tgttgctgcc
     5941 cttagtctgc cttccccagg tgtgttgctg cccttagtct gccttccccg gctgtgttgc
     6001 tgagtcctgg cggaaggagc tggagaagcg gatagaacct gtatgcgctc tgctctggct
     6061 ctgctctggt gccagcagaa ggcacccaca cacactcaca gtttgccagc agacatccca
     6121 tgtgggtttc ttctcatcag taggggaagt ggccacccaa atttcccttg ttcttcttta
     6181 ccagccaggc actcagtctg gtgtcacgtg acgcggcaca gaggaaagcc gcttctcaga
     6241 agtctgagaa aagcacacac attgtgatga acatgtactc tatcagcatt atcaaactta
     6301 acaaagaaac ttcatctcta gaactgcatc tcaagcttcc tgtttgttaa tatgctctta
     6361 tgacaatata ttttgtaatg tatccagaga aatcagaata gtgtgatatc cttatttcct
     6421 gaccttttct gaaaaagttt tatgcatgct ttcatttcct ataactttgc ttctggtatc
     6481 tcttttacct tattattacc ccaccaaatc agaaggaaat aaaagcatcc aagaggaact
     6541 taaaaggttc taaatgaaac taaactttaa acctgaaatt aattcacagc atccaggtaa
     6601 cttatttttg tcctttgctg attctgtcat atattcatgt gacttcctgg ggaaatgcct
     6661 ggtttgttgt ctcggaggat cctagtagct tttgaagaat ttgttaaata ctttctcaca
     6721 gttcatattt cctgttttat ataatatcat aaaattgaga cctgagtggt ggtgcacacc
     6781 tttaatccca gaactcagag gcagaggcag gaggatctct acagtttgag gttagcctgg
     6841 aacaagactg cttagtaaga ccctatctta aaaatcaaca aaatgtctgt ttcagcatga
     6901 gttctaaaat tgtaattaga ttttatttag cctgatttat gtaaataagt cttttatatt
     6961 gcctttaaat gtatagattg gagttaactt gcacagttgt attgtatata agatattgca
     7021 tgaccattaa tgaacttgtt gctgttttcc cacaatgtta acagttttgt gaatttttca
     7081 ctatgcattt acagtgttct ataacaatga cttaaaacta ttttatacat ttaaacatta
     7141 cgttatattg tatatatcta cttaaagagt attgtaaatg tcagtgttta taaaattatg
     7201 actttcccca aaatataaac tcatctttcc aaactaactt gtgacatatt acaaataccg
     7261 attttaagct ttgacatatt atcttgtagt gaaagctaag aagaaacatg ctgtcaagta
     7321 aatgtaagca aaatttgaaa ataaatttga tgtctttgta a
//
