LOCUS       XM_039081688            4515 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myosin VIIA and Rab interacting
            protein (Myrip), transcript variant X9, mRNA.
ACCESSION   XM_039081688
VERSION     XM_039081688.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081688.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4515
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4515
                     /gene="Myrip"
                     /gene_synonym="Slac2c"
                     /note="myosin VIIA and Rab interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 25 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:360034"
                     /db_xref="RGD:727731"
     CDS             166..2541
                     /gene="Myrip"
                     /gene_synonym="Slac2c"
                     /codon_start=1
                     /product="rab effector MyRIP isoform X5"
                     /protein_id="XP_038937616.1"
                     /db_xref="GeneID:360034"
                     /db_xref="RGD:727731"
                     /translation="MGRKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLA
                     EENSKCSILSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLW
                     VCCVCQQARLLRTQSLEWFYNNVKTRFKRFGSAKVLKNLYKKHRLESGACFDILGGGL
                     YEPNLENEGSISGSDSTFYRQSEGHSMMDTLAVALQVAEEAIEEAISKAESQRDSLDK
                     QNEASYLRDHRQELAEELAGTILQRIIRKQKDKADLHAEEEEPECTRPQSGGVKARGE
                     GTAAPPGRHKARAALWRSQSAFSFTTEDTLKTSSAEAAPRQPKDRAQRLLEESALPSW
                     RSMDGLDGKNLVPLLQSPDGNWMTLKDSSRQPPTRLLAKPKSRTFQALEVASSVASAY
                     DELGSDSEEDFDYSEALSKLRPPSQGRLKQPQPQPAQAQSSGQGPLATSPSNPEAMCS
                     DSETSSTSSSREAGCRAKLLWLQRKAPKNPSAEKTHLQGELDVNFNPQAAGGETSDSS
                     DPEETLHTADRRARRWRRARVGPEESNRGLPSPSAYPPALHTAQVSDNVSETDISNEA
                     QNSRSSTDSAEEKLRNRLYELAMKMSEKETSSGEDQESESKTEPKNQKGSLSSEENNQ
                     GVQEELKKVYLAAGTVYGLEGQLSELEDAARCIHSSTGETELADLEDQVAAAAAQVHH
                     AELQISDIESRISALTIAGLNIAPCVRLTRRRDQKQRSQVQTIDTSRQQRRKLPAPPV
                     KAEKIEASSVTPIKTFNRNFLLQGSSTNRPTASTSNTKDLMEPVLESAVMY"
ORIGIN      
        1 ccgcagcctc gggatcgcgc gctggacgca ggctgcggca ggtgacccgg ggccatccga
       61 ggcgcggtga ctctaagcct ggccgccatc catgagcccc gccgcggacc cactccaggc
      121 cggccacccc ggacctagct cagttgtccg tgtttaaccc tgaccatggg gaggaagctg
      181 gacctgtcgg gtctgaccga cgatgagacc gaacacgttc tccaagtggt acagagagac
      241 ttcaatcttc gcaaaaagga ggaggaccgg ctgagtgaga tgaagcagag gctggccgag
      301 gagaacagca agtgcagcat cctctcgaag caccagaagt tcgtggagcg ctgctgcatg
      361 cggtgctgct cccccttcac cttcttggtc aacgccaggc gccgctgtgg ggaatgcaag
      421 ttcagcgtct gcaagagctg ctgctcctac cagaagcatg agaagctatg ggtttgctgt
      481 gtctgccagc aagccaggct tctgaggacg cagtctctgg agtggttcta caacaacgtg
      541 aagacccgtt tcaagcgctt cggcagcgcc aaggtcctga agaacctgta caagaagcac
      601 cgtctggaga gtggtgcctg ctttgacatc ctaggaggag gactgtatga accaaacctg
      661 gagaatgaag ggagcatttc agggagtgac tccacattct acaggcagtc ggaaggacac
      721 agcatgatgg acaccttggc tgttgcccta caagtggcag aagaagccat cgaagaggcc
      781 atttctaaag cagaatccca gagggacagc ctggacaaac agaacgaggc cagctacctg
      841 cgggaccaca ggcaagagct ggcggaggag ctggccggca ccatcctgca gaggattata
      901 agaaaacaga aggataaagc tgacctgcat gctgaggagg aggagccaga gtgtacccgg
      961 ccccagagtg gcggtgtgaa ggccaggggt gaggggactg cggcccctcc aggacgacac
     1021 aaagcacgtg ctgccctctg gcggtcccag tctgcgttct ccttcactac tgaagacact
     1081 ctgaagacct cttcagcaga ggctgctcca aggcagccca aggaccgtgc ccagcgtctg
     1141 ctggaggagt ctgctctgcc cagctggagg agcatggacg gactagacgg gaaaaatctg
     1201 gtcccactcc tgcagagccc cgacgggaac tggatgactt tgaaggacag tagtagacag
     1261 cccccaaccc gcctgctggc caagccgaag agtaggacct ttcaggccct ggaggtggcg
     1321 tccagtgtgg catctgccta tgatgagtta ggttctgaca gtgaggaaga ctttgattac
     1381 agcgaagcct tgagtaaact gcgtccacca tcccagggca ggctcaagca accccagcct
     1441 cagcctgcac aggcccagag ttccggccaa ggtcccttag ccacctctcc ctcaaaccct
     1501 gaggccatgt gctcggattc agagacatcc tccactagct catctcggga agccggctgt
     1561 cgggctaagc tcctctggct gcagaggaag gcccccaaga acccctcagc agagaagacg
     1621 cacctccagg gagagctgga tgtcaatttc aaccctcagg cagccggtgg agagacttcc
     1681 gacagcagtg atccagagga gaccctccac actgcagacc gccgggccag gaggtggaga
     1741 agggcccggg tgggcccaga ggagtcaaac aggggtctgc cttcacccag tgcctatccg
     1801 ccggctctgc acacagctca ggtgtcagac aacgtgtcag agactgacat cagcaatgag
     1861 gctcagaatt cccggtccag cacagactct gcagaggaga agctgagaaa cagactgtac
     1921 gagttagcca tgaaaatgag cgaaaaggag acttcttctg gggaggacca ggagtccgag
     1981 tccaagaccg aaccgaagaa tcagaagggg agtctctctt ctgaggagaa caaccagggt
     2041 gtccaggagg agctgaagaa ggtgtacctg gcagcaggca cggtgtacgg gctggagggt
     2101 cagctgagtg agctggaaga tgctgcccgc tgcatccaca gcagcacggg tgagacagaa
     2161 ctggcagatc tggaggacca ggtggctgca gctgcagccc aggtgcacca cgcagagctc
     2221 cagatctctg acatcgagag ccgcatttca gccctgacca tcgctggctt aaacatagcg
     2281 ccatgtgtgc gtctcacaag aagacgggat cagaagcaaa ggagtcaggt acaaactata
     2341 gacacgtcga ggcagcagag gaggaaacta cctgcccctc ctgtgaaagc tgaaaaaatt
     2401 gaagcatctt ctgtgacccc cattaagaca tttaaccgca atttccttct acaaggctcc
     2461 tccacaaaca ggcccacggc aagtaccagt aacaccaagg acttgatgga gcctgttctg
     2521 gagtcagctg tgatgtacta aagtccggaa ctccgcacac agccagtgac ccactgcctc
     2581 cggccgtaca cgacagtgcc ttgacccaac agccatcgag tactgtgtgg atttccactg
     2641 aggcgagggc cagggggagg aggggctgca gtgcactgct gcacggggct gtcctgatac
     2701 ctcacccaga aggccttctc agtctgcaac actgaggtct tgcccactct ctgccttagg
     2761 ctcccagggg aatctgagac cgaatatcag gacgctggct tccaatagca gagctctgtg
     2821 ttcagaagat gcattgtgcc agtttaattt gctcctgtgt gctgtcttta ccagccctat
     2881 gtgtttttaa tccctttaat ccccatcacc agttcatcca atagaaagct tctagtgagg
     2941 aattgggggc taggaaggtg ggggttagta ccatcactga gcctttcttg tcacctccta
     3001 acagacgcta agagcagggg gccatagaaa cagtctcatt gggaaatgct tgaccacctc
     3061 cagctaagcc cccagccccc agcccccagc cctatgcttc tgtcctcccc actgcttggc
     3121 aaccaccaga tgaaaagctc tgatccacca atgccatacc caggtctctc tgaaaccatg
     3181 tctcattctg aattcggggg tttttgcatg gatttactga gggggagagg ggcctaaggg
     3241 acaacgtcac tattagtcta acttaaagga cagctttcag ggtcagcata atgtggcttg
     3301 gtcatgaatg ggctgttgta aaatataact ctgcaggaaa agcattccca ttctccaaaa
     3361 tccatctcct gccaaattca acaggattca gaatggcagc aaaccccctt agagaaaagc
     3421 agtgtgggtt gtgagggacg cagaggtggc cctcacccca aatttcgctg tttgtttcac
     3481 ggcaggggct ggaataaatg catgagtatg tgaagtgtat ttacgcacac aaataggtct
     3541 gaccctgtgc cggactccct gggggcctgc tgtgtgcttc tgggattttc tgaatcatag
     3601 gatgcggtgg ggagagggta aaggagggag gcacaggagt ggccattagt gctggctctg
     3661 aaggacacgg tgtgcccagt tctgtctagt gtctctctct tatggctttc cagaatccat
     3721 aactaaaggt cagaccagtg aacttgctga agccatacat gtgagctggt tctaactgga
     3781 atgcccccac ccccagaagc ccagccctgt cttcccttcc gagttctctg gttctcccgt
     3841 gcatccccag acttaattga actgctctcc ctgtgttgtg tgccattgcc actgaagggg
     3901 gtccttgtgt cttcccataa tgctcctgct gatgtgtgtg tcaccccaga gaaaggactt
     3961 catgaaaaca gtaaaacttt gacattttac ctagtgggtg tggttcacat taaaacaaaa
     4021 tttaaaaaaa aaaaaaaaaa caaaaaacaa aaaacaacac aacaaaaaga tctgacttcc
     4081 aaacaggatg ttttccctta ggaggcatga ggctgccttt gtgctaacag tgttaaaata
     4141 ctccattctc ttcggacaaa gcgtgtactg tgtaagcctt gcaaaaaatg agaacaacga
     4201 agaaaaagcc tgtttgaact tttataagag gtttccttgt gccaaataag tacaaagatt
     4261 taatttacta tttaaaccat aaacatgtta tagttccaga aattattttg tcatcagtga
     4321 ttttgatctt tagcttcaat atttatattt agattaattt ttataaatga aatattttga
     4381 tggttgaaga agtcgaggac aagaaggatg ctctctctga cggcttctca atgccttcct
     4441 gtctcacaca ctcggccaag aatcactgtc aagagaaacg accgcgaaca agcagtaaag
     4501 tcacctatga aaaca
//
