LOCUS       NM_001107987            4772 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus myomesin 3 (Myom3), transcript variant 1, mRNA.
ACCESSION   NM_001107987 XM_001068470 XM_003750060 XM_233562
VERSION     NM_001107987.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4772)
  AUTHORS   du Puy,L., Beqqali,A., van Tol,H.T., Monshouwer-Kloots,J.,
            Passier,R., Haagsman,H.P. and Roelen,B.A.
  TITLE     Sarcosin (Krp1) in skeletal muscle differentiation: gene expression
            profiling and knockdown experiments
  JOURNAL   Int J Dev Biol 56 (4), 301-309 (2012)
   PUBMED   22562206
REFERENCE   2  (bases 1 to 4772)
  AUTHORS   Beqqali,A., Monshouwer-Kloots,J., Monteiro,R., Welling,M.,
            Bakkers,J., Ehler,E., Verkleij,A., Mummery,C. and Passier,R.
  TITLE     CHAP is a newly identified Z-disc protein essential for heart and
            skeletal muscle function
  JOURNAL   J Cell Sci 123 (Pt 7), 1141-1150 (2010)
   PUBMED   20215401
REFERENCE   3  (bases 1 to 4772)
  AUTHORS   Schoenauer,R., Lange,S., Hirschy,A., Ehler,E., Perriard,J.C. and
            Agarkova,I.
  TITLE     Myomesin 3, a novel structural component of the M-band in striated
            muscle
  JOURNAL   J Mol Biol 376 (2), 338-351 (2008)
   PUBMED   18177667
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1 and FQ126179.1.
            
            On or before Aug 15, 2019 this sequence version replaced
            XM_003750060.4, NM_001107987.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This variant is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.23765.1,
                                           SRR26643296.16396.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000005.1  153276306-153276389
            85-263              JAXUCZ010000005.1  153278968-153279146
            264-344             JAXUCZ010000005.1  153280316-153280396
            345-504             JAXUCZ010000005.1  153281264-153281423
            505-662             JAXUCZ010000005.1  153282042-153282199
            663-758             JAXUCZ010000005.1  153287715-153287810
            759-847             JAXUCZ010000005.1  153288524-153288612
            848-892             JAXUCZ010000005.1  153290737-153290781
            893-1033            JAXUCZ010000005.1  153291225-153291365
            1034-1195           JAXUCZ010000005.1  153292410-153292571
            1196-1337           JAXUCZ010000005.1  153293047-153293188
            1338-1537           JAXUCZ010000005.1  153294799-153294998
            1538-1591           JAXUCZ010000005.1  153296149-153296202
            1592-1719           JAXUCZ010000005.1  153296700-153296827
            1720-1903           JAXUCZ010000005.1  153299980-153300163
            1904-2078           JAXUCZ010000005.1  153302655-153302829
            2079-2200           JAXUCZ010000005.1  153304041-153304162
            2201-2388           JAXUCZ010000005.1  153304528-153304715
            2389-2515           JAXUCZ010000005.1  153304940-153305066
            2516-2694           JAXUCZ010000005.1  153306127-153306305
            2695-2809           JAXUCZ010000005.1  153309552-153309666
            2810-2966           JAXUCZ010000005.1  153310728-153310884
            2967-3076           JAXUCZ010000005.1  153311370-153311479
            3077-3121           JAXUCZ010000005.1  153311904-153311948
            3122-3258           JAXUCZ010000005.1  153312852-153312988
            3259-3403           JAXUCZ010000005.1  153314480-153314624
            3404-3463           JAXUCZ010000005.1  153314795-153314854
            3464-3531           JAXUCZ010000005.1  153315268-153315335
            3532-3642           JAXUCZ010000005.1  153315959-153316069
            3643-3730           JAXUCZ010000005.1  153318885-153318972
            3731-3769           JAXUCZ010000005.1  153319648-153319686
            3770-3878           JAXUCZ010000005.1  153319902-153320010
            3879-4042           JAXUCZ010000005.1  153321239-153321402
            4043-4079           JAXUCZ010000005.1  153322862-153322898
            4080-4102           JAXUCZ010000005.1  153323051-153323073
            4103-4158           JAXUCZ010000005.1  153324567-153324622
            4159-4760           JAXUCZ010000005.1  153326245-153326846
            4761-4772           FQ126179.1         1-12                c
FEATURES             Location/Qualifiers
     source          1..4772
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4772
                     /gene="Myom3"
                     /note="myomesin 3"
                     /db_xref="GeneID:313625"
                     /db_xref="RGD:1310060"
     exon            1..84
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            85..263
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..4419
                     /gene="Myom3"
                     /note="isoform 1 is encoded by transcript variant 1;
                     myomesin family, member 3"
                     /codon_start=1
                     /product="myomesin-3 isoform 1"
                     /protein_id="NP_001101457.2"
                     /db_xref="GeneID:313625"
                     /db_xref="RGD:1310060"
                     /translation="MTLPHSPGSAGEPQASQTVQVHRLEHKHEEEQKEEREHSLRMGS
                     SVQRRTYRSSEEEQQFSPEDYALAAALALTASSELSWEAKLRRQTTRVELEERGQKRI
                     GFGNDLERMEMAFLRTQRLLRQRRDWKALRQRTEQKVLEAKELIELCSGRGPWFWIPL
                     RSHAVWEYTTVLLTCTIQGSFPFQVTWYKDDIQIDPRLFPAGKYRITNNYGLLTLEIR
                     RCTVEDSATYTVLVKNAFGQASSFAKVLIRTYLGKDAGFDSEIFKRSMFGPTVEFTSV
                     LKPIFAQEKEPFSLTCLFSDDVLEAEERIQWFRDGRLLRSSTRRQILYADRQASVKVS
                     CAYKEDEGFYTIRVSSPFGPQEQSAYVFIRDAAAEKPGAPGSPLNVRCLNVHRDCLTL
                     TWVPPSDTRGSTITGYSIELCQGDSEEWVPCLKTPGGTCRCPIQGLIEGQSYRFRVRA
                     ISKAGTSLPSKASAAVVMGDYDTVQKKTEIPFDLGRKITISKNDFEDAVTIPSAPTNV
                     HASEIRDTYAVLSWEEPHPRGRAPLTYTLEKSVIGSGTWEAISSETPIKSPRFALLDL
                     EKGKSYVFRVRALNQYGMSDPSEPSEPITLKGKPATLPPPAQVQSFRNTQTSVSLTWE
                     PVDGGSELLGYYIYSREAGASEWQTVNNKPIQDTKFTVPGLRTGKEYEFCIRSVSEAG
                     VGESSAVTQPIRVKQALATPSAPYDFALLNCGKNEMVIGWKPPKRRGGGKILGYYVDQ
                     HDSEELDWHPVSHQPNPSRVCKVTNLHEGHFYEFRARAMNWAGIGELSAPSSLFECKE
                     WTMPEPGPPYDVRASEIQATSVMLQWEPPLYIGAGPVTGYRVSFQEIGSEEWKPVTPD
                     ATSDTHLRVSDLQPGKQYMFRVQAMNSAGLGQPSVPTDPVLLEDKPDAHEIEVGVDEE
                     GQIYLAFEAPEAPDFPEFQWSKDYKGPPDPQRVEVKDEINKSKVILKEPDLQDLGVYS
                     VVVTDADEDTSASHTLTEEELNKLKKLSHEIRNPVIKLISGWNVDILEQGEVRLWLEV
                     EKLSPAAELHLIFNEKEIFSSPNRKINFDREKGLVEVIIQQLSEDDKGSYTAQLQDGK
                     AKNQITLALVDDDFDKLLRKADAKRRDWKRKQGPYFQDPLTWKVTEDCQVLLTCKVTN
                     TKKETRFQWLFQKKEAPRGQYSPQTGDGSLCIEEFSKEDQGLYRAVVSDERGEDDTVL
                     DLTGEALDAVLTELGRISALSATPLKIQGTEEGIRLFSKVKYYNVDYMKTAWFHKDKR
                     LESGDRVRAGTTLDEIWLHILDPKDSDKGKYTLEITAGKEVCQLSADLSGQAFDDALA
                     EHQRLKALAVIEKNRAKVVRGLPDVATIMEDKTLCLTCVISGDPSPEISWLKNDQPVS
                     FLDRYHMEVKGTEVTITIDKVTSEDSGRYGIFVKNKYGSETGQVTISVFKHGEEPKEL
                     KK"
     exon            264..344
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            345..504
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            505..662
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            663..758
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            759..847
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            848..892
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1033
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1195
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1337
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..1537
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1591
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1719
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..1903
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            1904..2078
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2079..2200
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2388
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2389..2515
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2516..2694
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2695..2809
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2810..2966
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            2967..3076
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3077..3121
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3122..3258
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3259..3403
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3404..3463
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3464..3531
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3532..3642
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3643..3730
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3731..3769
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3770..3878
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            3879..4042
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            4043..4079
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            4080..4102
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            4103..4158
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
     exon            4159..4761
                     /gene="Myom3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acattcttca ccggtcctca ctgagctgag ggcaggaaga gaccagggag cttcttactg
       61 tcctgagtgg acaccgctgt ttctgttatt gtgcttgcag ccatgactct gccccacagt
      121 cctggaagtg ccggggagcc ccaagcctcc cagaccgtgc aggtccacag gctggagcac
      181 aagcatgagg aggagcagaa ggaggagcgg gagcacagcc tgcgtatggg ctcttctgtg
      241 cagagacgaa cctatcgcag cagtgaggag gaacagcagt tcagccctga agactatgcc
      301 ctggctgctg ccctggccct cacagcctcc tcagagttgt cctgggaagc taaattgaga
      361 cgccagacca ccagagtaga gctggaggag cgtggacaga agcggattgg ctttggcaat
      421 gacttagagc gaatggagat ggccttccta cggacgcaga gactgctgcg tcagagacgg
      481 gactggaagg ccctgcgaca acggacagag cagaaggtcc tggaggccaa ggaactgatt
      541 gagctgtgct ctggccgggg cccctggttc tggatcccac ttcgatcgca cgctgtctgg
      601 gagtacacca cagtactgct gacctgcacc atccagggtt catttccatt ccaggtcacc
      661 tggtacaagg acgacatcca gatcgatccc cgcctctttc ctgccggcaa ataccgaatc
      721 accaacaact acggactgct caccctggag atcaggaggt gcacggttga ggactcagcc
      781 acctacactg tgctggtgaa gaacgccttt ggccaggcct cttcctttgc caaagtcctc
      841 atccgcactt acctgggaaa agacgctggc ttcgactcag agatctttaa acgatctatg
      901 ttcggcccca ccgtggagtt tacatcggtg ttgaagccaa tctttgccca agagaaagag
      961 cccttctccc tgacctgttt gttctcagat gatgtgttag aagctgagga gagaatccag
     1021 tggttcagag atggcaggct actgaggtct tcaacacgca ggcagatact ctacgcagac
     1081 cgccaggcat ccgtgaaggt gtcctgtgcc tacaaggagg atgaggggtt ctacaccatc
     1141 cgagtttctt ctccctttgg gccgcaggag cagagtgcct acgtctttat aagagatgct
     1201 gcagctgaga agccaggagc cccaggctcc ccactaaatg tccggtgtct gaatgtgcat
     1261 agagactgcc tgaccctgac gtgggtgcca cccagcgaca cccggggtag caccattact
     1321 ggctattcca ttgagctgtg ccagggtgat tcagaggagt gggtgccctg ccttaagacc
     1381 cctgggggaa cctgccggtg cccgatccaa ggcctcattg aagggcagag ctatcgattc
     1441 cgagtgcgag ccatcagcaa ggccggcacc agtctccctt ccaaggcctc agcagcagtt
     1501 gtcatgggtg actatgatac agtccagaag aagacggaga ttccctttga cctgggccgc
     1561 aagatcacca tcagcaagaa cgattttgaa gacgctgtga ccattccctc agccccaacc
     1621 aatgtccacg ccagcgagat cagagacacc tatgcagttc tgagctggga ggagccacac
     1681 ccccggggca gagccccact gacttacact ctggaaaagt ctgtcatagg cagtggaacc
     1741 tgggaggcca tcagctcaga aacacccatc aagtccccaa gattcgccct cctggacttg
     1801 gagaagggga aatcatatgt cttcagagtg agagccttga accagtacgg catgagtgat
     1861 ccctcagaac ccagcgagcc tatcaccctg aagggcaagc cagcgaccct ccctcctccg
     1921 gctcaagttc aaagtttccg aaacactcag acctctgtgt cccttacctg ggagcctgtg
     1981 gatggtggct cggaactcct gggttattac atctactccc gagaagcagg agcatcagag
     2041 tggcagacag tgaacaacaa gcccatccag gacaccaagt tcacagttcc agggctgagg
     2101 actgggaagg agtacgaatt ttgcatcagg tcggtcagcg aggctggggt tggcgagagt
     2161 tcagctgtaa cacagcccat cagggtcaag caagctctag ccaccccatc ggccccatat
     2221 gactttgcac tcctaaactg tgggaagaat gaaatggtca ttggatggaa accccccaag
     2281 cggcgaggag gcggcaagat cctgggctac tacgtggacc agcatgattc agaggagtta
     2341 gactggcacc cagtcagcca tcagcccaac ccaagccgag tgtgcaaggt caccaacctt
     2401 catgaaggcc atttctatga gttccgagcc cgggccatga actgggcagg cattggcgag
     2461 ctgtcggcac ccagcagcct gtttgagtgc aaagagtgga cgatgccgga accaggtccc
     2521 ccatatgatg tgagggcatc tgagattcag gccacctccg tgatgctgca gtgggagccc
     2581 ccactgtata tcggagctgg gccagtcaca ggctaccgtg tcagcttcca ggaaataggc
     2641 tctgaggagt ggaagccggt caccccagat gccacctccg acactcacct cagggtgtct
     2701 gacttgcaac caggaaagca gtatatgttc agggtccagg ccatgaactc agccggcctg
     2761 ggacaaccat cggtgcccac tgaccccgtg ctcctggagg acaagccaga tgcccatgag
     2821 attgaagttg gtgtggacga agagggccag atctacctgg ctttcgaagc ccccgaagcc
     2881 cctgacttcc ctgagtttca atggtccaag gattacaaag gcccgccaga cccacagagg
     2941 gtggaggtta aggatgaaat taacaagtcc aaggtcattc tgaaagaacc agaccttcag
     3001 gacctgggcg tctactcagt ggtggtcacc gatgctgacg aagacacctc tgctagccac
     3061 acactgacag aggaagaact gaacaagctg aagaagctga gtcacgagat cagaaaccca
     3121 gtcatcaagc tgatctctgg ctggaacgtg gacatcctcg agcaaggtga ggtgcggctg
     3181 tggctggagg tggagaaact gtcgccagct gcggagttgc acctcatctt caatgagaag
     3241 gagatcttca gctccccgaa ccgcaagatc aactttgacc gagagaaggg cttggtggag
     3301 gtcatcattc agcaactttc cgaagatgac aaggggtcct acaccgccca gctccaagat
     3361 ggaaaagcca agaaccagat caccctcgcc ctggtggatg acgattttga caagcttctg
     3421 agaaaggcag atgcaaagag aagagactgg aagagaaagc agggtcccta tttccaggat
     3481 cctttgacct ggaaggtcac agaggactgc caagtgcttc tgacgtgcaa ggtaaccaac
     3541 acgaagaagg agactcgctt ccagtggctc tttcagaaga aagaggcgcc ccgtgggcag
     3601 tacagcccgc agaccggaga tgggagtctc tgcattgagg agttttccaa agaagaccag
     3661 ggactctaca gagcagtggt ttctgatgag cgaggggagg atgacactgt gctggacctc
     3721 acaggggaag ccctagatgc cgtcctcact gagctgggca ggattagcgc tctctctgca
     3781 actccattga aaatccaggg gactgaagag gggattcggc tcttcagcaa ggtcaaatac
     3841 tacaacgtgg actatatgaa gacggcttgg ttccacaaag acaagcgtct ggagagcggc
     3901 gatcgggtac gggcgggcac caccctggac gagatttggc tccacatcct ggaccccaag
     3961 gactcagata agggtaaata caccctggag atcactgctg ggaaggaagt ctgtcagctc
     4021 tcagcagacc tgtctgggca agcttttgac gacgccctgg cagagcacca gagactgaag
     4081 gctttggctg tcatcgagaa gaatcgggct aaagtggtga ggggcttgcc agacgtggcc
     4141 accatcatgg aagataagac cctgtgcctg acctgcgtca tctcaggaga tccgtcccct
     4201 gaaatctctt ggctaaagaa cgaccagccc gtctccttcc tggaccgata ccacatggag
     4261 gtgaagggta cagaggtcac catcaccatt gacaaggtca ccagcgaaga tagcgggcgc
     4321 tatgggatct ttgtcaagaa caagtatggt tcagagacag gccaggtcac catcagcgtg
     4381 ttcaaacatg gggaggagcc caaggagctg aagaagtaat gagagtgttg gggggcagcc
     4441 tgagatccac cctacagcaa ccagcaggcc agccaagggg tcataagcta gcacaggcta
     4501 tgggggtggg acagggaaag ggacagggac atgacagacc cagatctaat acaccaaaga
     4561 gaagcaaagc ttggggctgg agagatggct cagcggttaa gagcacccga ctgctcttcc
     4621 agaggtcatg agttcaattc ccagcaacca catggtggct cacaaccatc tgtaatggga
     4681 tctgatgccc tcttctggtg tgtctgaaga cagctacagt gtacttatat ataataaatg
     4741 aataaataaa tctaaaaaaa aaaaaaaaaa aa
//
