LOCUS       XM_039094216            7250 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myosin IXb (Myo9b), transcript variant
            X21, mRNA.
ACCESSION   XM_039094216
VERSION     XM_039094216.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7250
                     /gene="Myo9b"
                     /note="myosin IXb; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 30 ESTs, 1 long SRA read,
                     5 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 44 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:25486"
                     /db_xref="RGD:3146"
     CDS             215..6481
                     /gene="Myo9b"
                     /codon_start=1
                     /product="unconventional myosin-IXb isoform X21"
                     /protein_id="XP_038950144.1"
                     /db_xref="GeneID:25486"
                     /db_xref="RGD:3146"
                     /translation="MSAHEAGSSGRRRPATFHLHIYPQLPSAGSQTSCRVTATKDSTT
                     SDVIRDVVASLHLDGSKHYVLVEVKESGGEEWVLDASDSPVHRVLLWPRRAQKEHPRE
                     DGYYFLLQERNADGSIQYLHVQLLAQPTAACRLVERGLLPRPQADFDDLCNLPELNEA
                     NLLQSLKLRFVQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFAL
                     ADVAYYTMLRKHVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAG
                     PVLEAFGNAKTAHNNNSSRFGKFIQVNYLESGIVRGAVVEKYLLEKSRLVSQEKDERN
                     YHVFYYLLLGVSEEERQEFQLKQPQDYFYLNQHNLNIEDGEDLKHDFERLQQAMEMVG
                     FLPATKKQIFSVLSAILYLGNVTYKKRATGRDEGLEVGPPEVLDTLSQLLKVKRETLV
                     EVLTKRKTITVNDKLILPYSLSEAITARDSMAKSLYSALFDWIVLRINHALLNKKDME
                     EAVSCLSIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFTQHIFKLEQEEYQGEGIS
                     WHNIDYTDNVGCIHLISKKPTGLFYLLDEESNFPHATSHTLLAKFKQQHEDNKYFLGT
                     PVLEPAFIIQHFAGRVKYQIKDFREKNMDYMRPDIVALLRGSDSSYVRQLIGMDPVAV
                     FRWAVLRAAIRAMAVLREAGRLRAERAEKAEAGVSSPVTRSHVEELPRGANTPSEKLY
                     RVRERRKSKGIKQKQIIPKNLLDSKSLRLIISMTLHDRTTKSLLHLHKKKKPPSISAQ
                     FQTSLNKLLEALGKAEPFFIRCIRSNAEKKELCFDDELVLQQLRYTGMLETVRIRRSG
                     YSAKYTFQDFTEQFQVLLPKDVQPCREAIAALLEKLQVDRQNYQIGKTKVFLKETERQ
                     ALQERLHGEVLRRILLLQSWFRMVLERRHFVQMKHAALTIQACWRSYRVRRTLERTRA
                     AVYLQAAWRGYLQRQAYHHQRHSIIRLQSLCRGHLQRRSFSQMMLEKQKAEQARETAG
                     AEMSEGEPSPVAAGEQPSEHPVEDPESLGVETETWMNSKSPNGLSPKKEIPSPEMETP
                     AQKTVPAESHEKVPSSREKRESRRQRGLEHVERQNKHIQSCREENSTLREPSRKASLE
                     TGESFPEDTKEPREDGLETWTETAAPSCPKQVPIVGDPPRSPSPLQRPASLDLDSRVS
                     PVLPSSSLESPQDEDKGENSTKVQDKPESPSGSTQIQRYQHPDTERLATAVEIWRGKK
                     LASAMLSQSLDLSEKPRTAGAALTPTEERRISFSTSDVSKLSPVKVQTSTEVDGDLSA
                     KKPAGHKKKSEDPSAGPDAGLPTGSQGDSKSAFKRLFLHKAKDKKPSLEGVEETEGSG
                     GQAAQEAPARKTLDVPSSQQHRHTTGEKPLKGKKNRNRKVGQITVSEKWRESVFRKIT
                     NANELKFLDEFLLNKVNDLRSQKTPIESLFIEATERFRSNIKTMYSVPNGKIHVGYKD
                     LMENYQIVVSNLAAERGEKDTNLVLNVFQSLLDEFTRSYNKTDFEPVKQGKAQKKKRK
                     QERAVQEHNGHVFASYQVNIPQSCEQCLSYIWLMDKALLCSVCKMTCHKKCVHKIQSY
                     CSYTGRRKSELGAEPGHFGVCVDSLTSDKASVPIVLEKLLEHVEMHGLYTEGLYRKSG
                     AANRTRELRQALQTDPATVKLEDFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVE
                     LPEKQEQLAAIYAVLDHLPEANHTSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCL
                     LRCPDNSDPLTSMKDVLKITTCVEMLIKEQMRKYKVKMEEINHLEAAESIAFRRLSLL
                     RQNAPWPLKLGFSSPYEGVRTKSPRTPVVQDLEELGALPEEAAGGDEDREKEILMERI
                     QSIKEEKEDITYRLPELDPRGSDEENLDSETSASTESLLEERAVRGAAEGPPAPALPC
                     PISPTPNPLPAATAPPRGRPTSFVTVRVKTPRRTPIMPMANIKLPPGLPLHLTSWAPA
                     LQEAAVPVKRREPPARRQDQVHSVYIAPGADLPSQGTLGPLDHHDAILPGAKRRYSDP
                     PTYCLPSSSSQANG"
ORIGIN      
        1 tctccgacgc gctggcgccc gcccactcag cgcctccgga acccggaagt gagggcgcac
       61 aggggagcgg agggcgaggc tggtcgctcc gggcgggggg gccgcgagca gcgggcgggc
      121 cggccggaga ccggcggcgc gcagcggtcc aagtccagtt gcaggaggtg cgcggcccgc
      181 cgatgaggca tgctgaggcc aggaggtggg caggatgagt gctcacgagg ctggcagctc
      241 aggccgaagg cggccggcca ccttccacct gcacatctac cctcagctgc ccagtgctgg
      301 gagccagacc tcatgccgtg taaccgccac caaggacagc acaacaagcg atgtcatccg
      361 agacgtggtg gccagtctac acctggacgg ctcgaagcac tatgtgctgg tggaggtgaa
      421 ggagtcgggt ggggaggagt gggtgctgga tgccagcgac tcgcctgtgc accgagtgct
      481 gctgtggcct cggcgagcgc agaaggagca ccctcgggag gacggctact acttcctgct
      541 gcaggagcgc aacgctgacg gcagcattca gtacctgcac gtgcagctgc tggctcagcc
      601 cacagccgca tgtcgcctgg tggagcgagg gctgctgcca aggcctcaag cggacttcga
      661 cgacctgtgc aacctgccgg agctgaacga ggccaacctg ctgcagagcc tgaagctgcg
      721 cttcgtgcag cagaagatct acacgtacgc gggcagcatc ctggtggcca tcaacccctt
      781 caagttcctg cccatttaca accccaagta tgtgaagatg tacgagaacc agcagctggg
      841 aaagctggag ccgcacgtgt tcgctctggc cgatgtagcc tactacacca tgctgcgcaa
      901 gcacgtgaac cagtgcatcg tcatctctgg tgagagcggg tccggcaaga cgcaaagcac
      961 caacttcctc atccactgcc tcacagcgct cagccagaag ggctacgcca gcggcgtcga
     1021 gaggaccatc ctgggtgcag ggcctgtgct ggaggctttt gggaacgcca agacagccca
     1081 caacaacaac tccagccgct tcgggaagtt catccaagtc aactacctgg agagtggcat
     1141 cgtgagggga gctgttgtgg aaaaatacct tcttgaaaag tctcgcctgg tttcccagga
     1201 gaaggatgag cggaactacc atgtgtttta ttatctgctg ctgggcgtca gtgaggaaga
     1261 gcgtcaggaa tttcagctga agcagcctca agactatttc tacctcaacc agcataactt
     1321 gaatattgaa gatggagaag acctcaaaca tgactttgaa aggcttcagc aggccatgga
     1381 gatggtgggc ttcctacctg ccacgaagaa gcagatcttc tctgtcctct cagccatcct
     1441 gtatcttggc aatgtcacct ataagaagag agccacaggc cgggatgaag gcctggaggt
     1501 cgggcccccg gaggtattgg acacactatc ccagctcctg aaggtaaagc gggagaccct
     1561 ggtggaggtc ctaaccaaga gaaaaacaat cacggtcaat gacaaactca tcctgcctta
     1621 cagcctcagt gaggctatca ctgcacgaga ctccatggct aagtctctgt acagcgccct
     1681 gtttgactgg attgtgctga ggatcaacca cgccctcctc aacaagaagg acatggaaga
     1741 ggctgtttct tgcttgtcca ttggcgtcct ggacatattc ggatttgagg actttgaacg
     1801 gaacagcttc gagcagtttt gcatcaacta cgccaacgag cagttgcagt actacttcac
     1861 ccagcacatc ttcaagctgg agcaggagga gtaccagggt gagggtatct cgtggcacaa
     1921 cattgactac accgacaacg tgggctgtat ccacctcatc agcaagaagc ccactggcct
     1981 cttctacctg ctggacgagg aaagcaactt tccccatgcc acaagccaca ctctgctggc
     2041 caaattcaag cagcagcatg aggacaacaa gtacttcctg ggcacaccag tcctggagcc
     2101 cgccttcatc atccagcact tcgcaggcag agtaaagtac cagatcaagg acttccggga
     2161 gaagaacatg gactacatgc ggcctgacat cgtggcactg ctaaggggca gtgacagctc
     2221 ctatgtgcgc caactcatcg gcatggaccc ggtagctgtg ttccgctggg ctgtattacg
     2281 ggcagccatc agggccatgg ctgtgctgcg ggaggctggg cgcctgcgtg cagagagagc
     2341 agagaaagca gaagcaggtg taagtagtcc tgtcactcga agtcacgtgg aagagctgcc
     2401 aagaggagcc aacacccctt cagagaaact gtaccgggtg agggagcgga ggaagagtaa
     2461 aggtatcaaa caaaagcaga tcattcccaa gaacctgctg gactctaagt ccctgaggct
     2521 catcatcagc atgacgctgc atgaccgaac taccaagtca ctgctgcacc tgcacaagaa
     2581 gaagaagccg cccagcatca gtgcacagtt ccagacatct cttaacaagc tgttggaggc
     2641 gctgggcaag gctgagccct tcttcatccg ctgcattcgc tccaatgccg agaagaagga
     2701 gctctgcttt gatgatgagc tggtgcttca gcaactgcgc tacacaggca tgctggagac
     2761 cgtgcgcatc cggcgctctg gctacagcgc caagtacacc ttccaggact tcacggagca
     2821 gttccaggtg ctgctgccca aggatgtcca gccctgtagg gaggccattg ctgccctgtt
     2881 ggagaagctg caggtggaca ggcagaacta ccagatcggg aagacgaagg tcttcctgaa
     2941 ggagacagag cggcaggccc tgcaggagag gctgcatggt gaggtcttac gcaggatcct
     3001 gctgctgcag agttggttcc ggatggtgct ggaacgcagg cactttgtgc agatgaagca
     3061 tgctgccctg accatccagg cctgctggcg gtcttatcgt gtgcgccgta cactggagag
     3121 gacgcgggca gctgtgtatc ttcaggctgc ctggagaggc tacctgcaga gacaggccta
     3181 ccaccaccag aggcatagca tcatccgcct gcagagcctc tgccgtggcc acctacagcg
     3241 caggagcttc agccagatga tgttagagaa gcagaaggca gagcaagcca gggagactgc
     3301 aggagcagag atgtcagagg gagagcccag ccctgtggcc gctggggagc agccgtctga
     3361 gcaccctgtg gaggaccctg agagcctggg tgtggagact gagacctgga tgaacagcaa
     3421 gtccccaaat ggcttgtcac ctaagaagga gatccccagc ccggagatgg agaccccagc
     3481 ccaaaaaaca gtgccagctg aaagtcatga gaaagtcccc agtagccggg agaagcgaga
     3541 gtcacggcgg cagcgagggt tggagcatgt tgaacgacag aacaaacaca tccaatcctg
     3601 cagggaggag aatagcaccc tccgagaacc ttccagaaag gcaagcctgg aaacagggga
     3661 gagcttccct gaggacacaa aggagcccag agaagatgga cttgagacat ggactgagac
     3721 cgcagccccc tcttgtccaa agcaggtgcc gattgtggga gatccgccta ggagtcccag
     3781 tcccttgcag aggcccgcca gcctggacct agacagcagg gttagcccag tgctccccag
     3841 cagctccctg gaatcccccc aggatgagga caagggtgag aacagcacca aggttcagga
     3901 caagcccgag agtcccagtg gctccaccca gatccaacgg taccaacacc cggacacaga
     3961 gcggctagcc actgctgtgg agatatggcg aggcaagaag ctcgccagtg ccatgctgag
     4021 ccaatccctg gacctgagtg agaagccccg gactgcaggg gcagccctga ctcccacaga
     4081 ggagaggcgc atctccttct ccaccagtga tgtctccaag ctgtccccgg tcaaggtaca
     4141 gacttcaact gaagtcgatg gggatctgag cgccaagaag ccagccggcc ataagaagaa
     4201 gtcagaagac ccatctgctg gtcccgatgc aggcctgccc acaggctccc agggtgactc
     4261 taaatctgcc tttaagcgac tcttcctgca caaagccaag gataagaagc ccagcctgga
     4321 gggtgtggag gagacagagg gcagtggagg gcaggctgca caggaggccc cggccaggaa
     4381 gactctagat gtaccttcta gccagcagca ccgccacacc acaggcgaga agcctctaaa
     4441 agggaagaag aaccgaaatc gtaaggtcgg acagatcaca gtgtccgaga agtggcgaga
     4501 gtcggtgttc cgtaagatca ctaatgccaa cgagctcaag tttctggatg agttcctgct
     4561 caacaaggtg aatgaccttc gctcacagaa gacacccatc gagagcttgt tcattgaggc
     4621 cactgagcgt ttcaggagca atatcaagac catgtattct gtgcctaacg ggaagatcca
     4681 tgtaggctac aaggacttga tggagaacta ccagatcgtt gtcagtaacc tggctgccga
     4741 gcgtggggag aaggacacca acctggtcct caatgtcttc cagtcactgc tggatgaatt
     4801 cactcgcagc tacaacaaga ctgactttga gccggtcaag cagggcaaag cccagaagaa
     4861 gaagaggaag caggagcgtg ctgtccagga acacaatgga catgtgtttg ccagctacca
     4921 agtgaacatc ccgcagtcgt gtgagcagtg tctgtcctac atctggctca tggacaaggc
     4981 cctgctatgc agtgtgtgca agatgacctg ccacaagaaa tgtgtgcaca agattcagag
     5041 ctattgctcc tacactggac ggaggaagag tgagctgggt gccgaaccag gccacttcgg
     5101 cgtgtgtgta gacagcctga ccagtgacaa ggcctccgtg cccattgtgc tggagaagct
     5161 tctggaacat gtagagatgc atggcctgta taccgagggt ctttaccgca agtcaggcgc
     5221 tgccaaccgg acacgggaat tacgccaggc tctgcagaca gaccctgcta cagttaagct
     5281 ggaggacttc cccatccacg ccatcaccgg ggtcctgaag caatggctgc gggagctgcc
     5341 tgagccactc atgacttttg cccagtatgg agacttcctc agggctgttg agcttccaga
     5401 gaagcaggag cagctggctg ccatctatgc agtcctggac cacctgcctg aagccaacca
     5461 cacctccctg gagaggctca tcttccacct tgtcaaagtg gccctgcttg aagatgtgaa
     5521 ccgcatgtct ccgggagctc tagctatcat cttcgcgccc tgcctgcttc gctgccctga
     5581 caactccgac cccctgacca gcatgaagga cgtactaaag attaccacgt gtgtggagat
     5641 gctcatcaag gaacagatga ggaaatacaa ggtgaagatg gaggagatca accacctgga
     5701 ggcagctgag agcattgcgt tccgcaggct ctccctgctg aggcagaatg ccccgtggcc
     5761 tctcaaactg gggttttcgt ctccctatga gggggtccgg accaaaagcc ccaggacccc
     5821 agtggtccaa gacttggagg agctgggggc tctccccgag gaggcggcag gtggtgacga
     5881 ggaccgggaa aaggagattc tcatggagag gattcagtcc atcaaagaag agaaggagga
     5941 catcacatat cgactgccgg agctggaccc acggggttct gacgaggaga accttgactc
     6001 agagacatca gccagcactg agagcctgct ggaggagagg gccgtgcggg gggccgcaga
     6061 agggcccccc gcacctgctc tcccctgccc catttcgccc accccgaacc ccctccccgc
     6121 ggccaccgcc cctccacgag gaaggccgac atccttcgtc acggtcagag tgaagacacc
     6181 ccggaggacc cccatcatgc ccatggccaa catcaagctc cctccgggcc tgcccttgca
     6241 cctgacgagc tgggcacctg ctctccagga ggctgctgtt ccagtgaagc gccgagagcc
     6301 acctgcccgc cgacaggacc aggtacattc cgtatacatc gcccctggag ctgacctgcc
     6361 atcgcagggt acactaggac ccctggacca ccatgatgcc atacttcctg gggccaaacg
     6421 caggtattca gaccccccta cctactgcct gccctccagc tccagccaag ccaatggctg
     6481 aggaccatga ctggccatct gcgtgttcta aaatccccga actggcatcc cagctgtgga
     6541 gccggccttc actctctgag aaggatctag aatgaaaagt tcccagaggg atgctgtggc
     6601 cagctctgtg tgttgtggag gctggggact gctggccagg accatcagag ccccaacctg
     6661 cacagcagtt cccccccccc ccctttgtac ttttcagtaa ctgtttctct ttttgtggtt
     6721 tacataactt ttaagttcat aacagcctta atggaggacc aaactttttg tacgtgtgtc
     6781 tgagctttga tattaactgt ccaccgctgt aacctggaca tgggcaggac tagcctgcaa
     6841 agtggatatg tgggccacac ctggcgactg cactccacag ccatggagag caagcaagca
     6901 agcgaacgag cggactcaca agacacctct tacccttgaa tacctcccag cagcggtcat
     6961 ctggccagag aaccttccag agattgtggg agctgtccac agggtcacag ctgaaggcag
     7021 gacagaatgg gaagtccctg catcgcaggg atgctctacc cactgcctgt gggctgcaag
     7081 gagccaggga tcggagctgt agggacaagc agtgcatgtc ccgaatttcc tctgcagccc
     7141 ccgtgtcagc ctgggttctt aagaggctgg ctctcttctc aggccctacc cagtcctgga
     7201 cacaaggaag ccccaccgga ggtgtgaaat aaaagtgctt gacaagtgtt
//
