LOCUS       NM_001108076            3833 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus myosin IF (Myo1f), mRNA.
ACCESSION   NM_001108076 XM_001079144 XM_234942
VERSION     NM_001108076.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3833)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   2  (bases 1 to 3833)
  AUTHORS   Kim,S.V., Mehal,W.Z., Dong,X., Heinrich,V., Pypaert,M., Mellman,I.,
            Dembo,M., Mooseker,M.S., Wu,D. and Flavell,R.A.
  TITLE     Modulation of cell adhesion and motility in the immune system by
            Myo1f
  JOURNAL   Science 314 (5796), 136-139 (2006)
   PUBMED   17023661
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 9, 2017 this sequence version replaced NM_001108076.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.25952.1,
                                           SRR26643299.29996.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000007.1  15065530-15065676
            148-285             JAXUCZ010000007.1  15083774-15083911
            286-375             JAXUCZ010000007.1  15084344-15084433
            376-470             JAXUCZ010000007.1  15084523-15084617
            471-558             JAXUCZ010000007.1  15085995-15086082
            559-648             JAXUCZ010000007.1  15086169-15086258
            649-780             JAXUCZ010000007.1  15087828-15087959
            781-915             JAXUCZ010000007.1  15088119-15088253
            916-1048            JAXUCZ010000007.1  15089957-15090089
            1049-1245           JAXUCZ010000007.1  15090239-15090435
            1246-1326           JAXUCZ010000007.1  15093976-15094056
            1327-1413           JAXUCZ010000007.1  15094169-15094255
            1414-1500           JAXUCZ010000007.1  15096550-15096636
            1501-1668           JAXUCZ010000007.1  15097089-15097256
            1669-1754           JAXUCZ010000007.1  15098875-15098960
            1755-1836           JAXUCZ010000007.1  15101239-15101320
            1837-1943           JAXUCZ010000007.1  15102922-15103028
            1944-2042           JAXUCZ010000007.1  15103887-15103985
            2043-2187           JAXUCZ010000007.1  15104089-15104233
            2188-2302           JAXUCZ010000007.1  15106953-15107067
            2303-2472           JAXUCZ010000007.1  15107155-15107324
            2473-2618           JAXUCZ010000007.1  15110067-15110212
            2619-2765           JAXUCZ010000007.1  15110669-15110815
            2766-2914           JAXUCZ010000007.1  15110951-15111099
            2915-2998           JAXUCZ010000007.1  15111526-15111609
            2999-3194           JAXUCZ010000007.1  15113065-15113260
            3195-3364           JAXUCZ010000007.1  15113358-15113527
            3365-3833           JAXUCZ010000007.1  15115619-15116087
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11-q13"
     gene            1..3833
                     /gene="Myo1f"
                     /note="myosin IF"
                     /db_xref="GeneID:314654"
                     /db_xref="RGD:1309750"
     exon            1..147
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..3441
                     /gene="Myo1f"
                     /note="myosin-If"
                     /codon_start=1
                     /product="unconventional myosin-If"
                     /protein_id="NP_001101546.1"
                     /db_xref="GeneID:314654"
                     /db_xref="RGD:1309750"
                     /translation="MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVSNLRKRFMDD
                     YIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCE
                     NQCVIISGESGAGKTVAAKYIMGYISKVSGGGDKVQHVKDIILQSNPLLEAFGNAKTV
                     RNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGAS
                     QEQQQNLGLMTPDYYYYLNQSDTYKVEGTDDRSDFNETLNAMQVIGIPTSVQQLVLQL
                     VAGILHLGNISFCEEGNYARVESVDLLAFPAYLLGIDSGRLQEKLTSRKMDSKWGGRS
                     ESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEI
                     FQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIEN
                     KLNPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSAGFVIHHYAGK
                     VSYDVSGFCERNRDVLFSDLIELMQSSDQAFLRMLFPEKLDVDKKGRPSTAGSKIKKQ
                     ANDLVSTLKKCTPHYIRCIKPNETKRPRDWEESRVKHQVEYLGLRENIRVRRAGFAYR
                     RQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESL
                     FLLEEMRERKFDGFARTIQKAWRRHIAVRKYEEMREEASNILLNKKERRRNSINRNFV
                     GDYLGLEERPELRQFLAKRERVDFADSVTKYDRRFKPIKRDLILTPKCVYVIGREKVK
                     KGPEKGLVREVLKKKLEIQALRGVSLSTRQDDFFILQEEAADSFLESIFKTEFVSLLC
                     KRFEEAARRPLPLTFSDMLQFRVKKEGWGGGSTRNVTFSRGTGDLAVLKAGSRALTIS
                     IGDGLPKSTKPTRKGLAQGRPRRSAQAPTRAAPGPPRGLNRNGVPPSSQVRSLPMEIT
                     SGRSSQRPPRGPPSSTLGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSIGQRPVP
                     GVGRPKPQPRTHGPRCRALYQYIGQDVDELSFNVNEVIEILMEDSSGWWKGRLHGQEG
                     LFPGNYVEKI"
     exon            148..285
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            286..375
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            376..470
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            471..558
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            559..648
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            649..780
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            781..915
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1048
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1245
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1326
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..1413
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1500
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1668
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1669..1754
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1755..1836
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1837..1943
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            1944..2042
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2043..2187
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2188..2302
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2303..2472
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2473..2618
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2619..2765
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2766..2914
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2915..2998
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            2999..3194
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            3195..3364
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
     exon            3365..3833
                     /gene="Myo1f"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaggggctg ttgcaagagg aactagggcc aggagcctgt gaagaaggag taggtgaagg
       61 acagccatgg cagagccacc cccaagaacc ctctgaacct gcacccctgt cattacccac
      121 aggagcctga caccacccat caccatgggc agcaaggagc gctttcactg gcagagtcac
      181 aatgtgaagc agagtggtgt ggatgacatg gtgctgctgc cccagatcac tgaggacgcc
      241 atcgtgagca acctccgcaa gcgcttcatg gatgactaca tcttcacata tattggttca
      301 gtgctaatct ctgtaaaccc cttcaagcag atgccctact tcactgaccg ggaaattgac
      361 ctctatcagg gtgcggccca atatgagaat cccccgcaca tctatgccct caccgacaac
      421 atgtaccgga atatgctgat cgactgtgag aaccagtgtg tcattatcag cggggagagt
      481 ggagctggga agacagtggc tgctaaatac atcatgggct acatctccaa ggtgtctggt
      541 gggggagaca aggtccagca cgtcaaagac ataatcctac agtcaaaccc actgcttgaa
      601 gctttcggca atgccaagac tgtgcgcaac aacaattcca gccgctttgg caagtacttt
      661 gagatccagt tcagccgagg tggagaacca gatggaggca agatctccaa tttcttgctg
      721 gaaaagtctc gtgtggtcat gcaaaatgag aatgagagga atttccacat ctactatcag
      781 cttctggaag gggcctccca ggagcagcag cagaacctag gactcatgac accagactac
      841 tattactacc tcaaccaatc agacacctac aaggtggaag gcactgatga ccggagtgac
      901 ttcaacgaga ccctgaacgc catgcaagtc attgggattc cgaccagtgt gcagcagctt
      961 gtcttgcagc tcgtggcagg gatcttgcac ctggggaaca tcagcttctg tgaagaaggg
     1021 aattatgccc gcgtggagag cgtagacctc ctagccttcc cagcctacct gctgggcata
     1081 gacagtgggc ggctgcaaga gaagctgacc agccgtaaga tggacagcaa atggggtgga
     1141 cgaagcgagt ccattgatgt gaccctcaat gtggaacagg cagcctacac tcgtgatgca
     1201 ctggccaagg gactctatgc ccgcctcttc gacttcctgg tggaggctat caaccgtgct
     1261 atgcagaagc ctcaggaaga atacagcatc ggtgtgcttg acatctacgg ctttgagatc
     1321 ttccagaaaa atggctttga acagttctgc atcaacttcg tcaatgaaaa gctgcaacag
     1381 atttttattg agctcaccct gaaggcagag caggaggagt atgtgcaaga gggcatccgc
     1441 tggaccccca tcgaatactt caacaacaaa attgtgtgtg acctcatcga aaacaagctg
     1501 aacccgccag gcatcatgag cgtactggat gatgtgtgcg ccacgatgca cgctacgggt
     1561 ggtggcgcgg accagacatt gctacaaaag ctgcaagcag cagtgggcac ccacgagcac
     1621 ttcaacagct ggagcgcagg tttcgtcatc catcactatg caggcaaggt ctcctatgat
     1681 gtcagtggct tctgtgagag gaatcgagat gtactgttct ctgatcttat agaactgatg
     1741 cagtccagcg accaggcctt cctacggatg ctctttcctg agaagctgga tgtagacaag
     1801 aagggccgcc ccagtactgc tggctccaag atcaagaaac aagccaacga cctggtatcc
     1861 acgctgaaga agtgcacgcc acactacatc cgctgcatca aacctaacga gacgaagcgg
     1921 ccccgggact gggaggagag cagagtgaag catcaagtgg agtacctggg cctgagggag
     1981 aacatccgag tgcgtagggc aggttttgcc taccgtcggc agttctccaa gttcctgcaa
     2041 aggtatgcca tcctgacccc tgagacatgg ccacggtggc gtggagatga acgtcagggt
     2101 gtccagcacc tgcttcgtgc tgtcaacatg gagccagacc agtaccagat gggcagcacc
     2161 aaggtctttg ttaagaaccc tgagtcgctt ttcctcctgg aagagatgcg agagaggaag
     2221 tttgacggct ttgcccgcac tatccagaaa gcctggcggc gccacatagc agtccgaaag
     2281 tatgaagaga tgcgggaaga agcttccaac atcctactga acaagaagga acgaaggcga
     2341 aacagcatca accggaactt tgtcggggac tatctggggc tggaggagcg gcctgagctg
     2401 cgccagttcc tggctaaaag ggaacgagtg gactttgccg actcagtcac caagtatgac
     2461 cgccgcttca agcccatcaa acgggacttg atcctgaccc ccaagtgcgt gtatgtgatc
     2521 gggagagaga aggtgaaaaa gggaccagag aagggtctgg tgcgtgaagt tctgaagaag
     2581 aaattggaga tccaagctct ccgaggggtg tccctcagca cccgacagga tgacttcttc
     2641 atccttcaag aagaggctgc tgatagcttc ttagaaagta tcttcaagac ggaatttgtc
     2701 agccttctgt gcaagcgctt tgaagaggca gcgcgcaggc cactacccct caccttcagc
     2761 gacatgctac agttccgagt gaagaaggaa ggctggggcg gaggcagcac ccgaaacgtc
     2821 accttctctc gagggacagg tgacttggct gtgctcaagg ctgggagtcg agctctcact
     2881 atcagcattg gggacggatt gcctaagagc accaagccta cacgtaaggg gttagcccag
     2941 ggaagacctc gaaggtcagc gcaggctcct actcgagcag ccccaggacc cccgagaggc
     3001 ctgaatcgaa atggggtacc accctcttcc caggtaaggt ccctacccat ggagatcaca
     3061 tctggcagga gttcccagag gcctccacgg ggccctccat cctcaaccct aggagccagc
     3121 agacgtcctc gagcacggcc accttcggag cacaacacag aattcctaaa tgtacctgac
     3181 cagggtgtgg caggcatgca aaggaagcga agtatagggc agagacctgt gccaggagtg
     3241 ggccggccta agccccaacc acggacacat ggcccgaggt gccgggcact gtaccagtac
     3301 ataggccaag atgtggatga gctgagcttt aacgtgaatg aagtaattga gatcctgatg
     3361 gaagattctt ctggctggtg gaaaggtcgg ttgcatggcc aggaaggtct ctttccagga
     3421 aactatgtgg agaagatctg atcatctatc cacacacctg tctgcttgtc ttcctgggag
     3481 ccaaaccctg ccagtgggag ccttgattac cctgtctgca ctggccaggc ttatgacctc
     3541 cagcccagtg ggggccctgt gtataggagg atcaccactg tagcacccca tgcctggtgc
     3601 tgccttccta tgggttgaat tgctatctaa gtctccattt tatcatgtgt ccaatagtat
     3661 tttctgcaga acctacctcc cagctgcctt gtgtgcatga aatgaatcat atcctgccct
     3721 gtgagctaag tgctgggcac tgcccagggt taggagactt caacaattag gcctttccac
     3781 tttttctcat cactgaggca ataaacatat gtcaggtaaa aacaagaagt aaa
//
