LOCUS       XM_039080888            6930 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myosin IE (Myo1e), transcript variant
            X1, mRNA.
ACCESSION   XM_039080888
VERSION     XM_039080888.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080888.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6930
                     /gene="Myo1e"
                     /gene_synonym="Myr3; MYR5"
                     /note="myosin IE; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 24 ESTs, 15 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 81 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:25484"
                     /db_xref="RGD:3144"
     CDS             2921..5962
                     /gene="Myo1e"
                     /gene_synonym="Myr3; MYR5"
                     /codon_start=1
                     /product="unconventional myosin-Ie isoform X1"
                     /protein_id="XP_038936816.1"
                     /db_xref="GeneID:25484"
                     /db_xref="RGD:3144"
                     /translation="MYRNMIIDRENQCVIISGESGAGKTVAAKYIMSYVSRVSGGGPK
                     VQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEK
                     SRVVMRNPGERSFHIFYQLIEGASPEQKQSLGITSMDYYYYLSLSGSYKVDDIDDKRD
                     FQETLHAMNVIGIFSEEQTLVLQIVAGILHLGNINFKEVGNYAAVESEEFLAFPAYLL
                     GINQDRLKEKLTSRQMDSKWGGKSESIHVTLNVEQACYTRDALAKALHARVFDFLVDS
                     INKAMEKDHEEYNIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEY
                     VQEGIRWTPIEYFNNKIVCDLIESKVNPPGIMSILDDVCATMHAVGEGADQTLLQKLQ
                     MQIGSHEHFNSWNQGFIIHHYAGKVSYDMDGFCERNRDVLFMDLIELMQSSELPFIKS
                     LFPENLQADKKGRPTTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKKPKDWEESR
                     VKHQVEYLGLKENIRVRRAGYAYRRVFQKFLQRYAILTKATWPVWRGDEKQGVLHLLQ
                     SVNMDSDQFQLGRSKVFIKAPESLFLLEEMRERKYDGYARVIQKTWRKFVARKKYVQM
                     REDASDLLLNKKERRRNSINRNFIGDYIGMEEHPELQQFVGKREKIDFADIVTKYDRR
                     FKGVKRDLLLTPKCLYLIGREKVKQGPDKGLVKEVLKRKIEVERILSVSLSTMQDDIF
                     ILHEQEYDSLLESVFKTEFLSLLTKRYEEKTQKQLPLKFSNTLELKLKKENWGPWSAG
                     GSRQVQFYQGFGDLAILKPSNKVLQVSIGPGLPKNARPTRRNTVSSRGYSGGTNNNYP
                     MRAAPAPPGCHRNGLTRNQFVHPPRASGNQRSNQKSLYTSMARPPLPRQQSTGSDRLS
                     QTPESLDFLKVPDQGAAGVRRQTTSRPPPAGGRPKPQPKPKPQVPQCKALYAYDAQDT
                     DELSFNANDVIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI"
ORIGIN      
        1 gttccacagt accgtggttc tctgcccacg aaatcagagc agataccgtt ggctctcagc
       61 acttttcctt tcacaatgag ggctgggctt ccaagggcaa aggctcaagt gttttctggc
      121 atttcatgga gtcaaagtgc aactccatca cagtcctcct ttgagttata ggagcgtgca
      181 ttctaagtgt ccgagacctc tgcctatcct ggacaaagtc cttctctgtg ctcggcgggt
      241 gttgtcctga tgacacagta gagactcttt gtggttcaga ctttgaaggt ttgaaaagat
      301 cacctcatga acagaaaagc tacctcccca gtttttctga acctttatat ttaccgaagg
      361 aaacccgaga aggcatgatt ggctattgag aatgcctggc gtgtttccct gttaatctgc
      421 cagatggtgt tttataatag ggctttaaaa acacagaaag caaacctcat ggaaatgtgt
      481 gttgacttca tggtgaaaga gagctgtgtt agacggggat gttcagccag cagtcaggac
      541 tttgctttgg gacagctgta cattagtgaa attgtcacct gaactagtca cagccatgaa
      601 aggtttgtgt tatctgtata tcagcaccat ggtgcttaac gctgatgcta tggtaacccc
      661 gaaggcccag tgtctaggaa atatgggtgc tttatgatat aacatgcacc ttggatttca
      721 cctagaatgc ctggggatgt tttttcactc ggggcttttt tttttttttt ttttattatt
      781 tacaatgctt acttgactgt tagaagcact gaaaccctgg cagccatact tttgcaggct
      841 gccttgtcag cccacccatc acccacgtgt ttaggtattt aactcactag agactcagat
      901 cacagtgcac ttgaactgtt acaatcagta ccgtgctgtt ttctctttct ttctttcttt
      961 cttcctttct ttcttccttt ctttcttcct tccttccttt ctttctttct ttcaaaagga
     1021 attttctcca agtatctgtt cagttaattc cctaccaccc tacttttaag attagatata
     1081 tgtctggatt tgttgaccat tatagtagca ttatttaaat ttgtaatgga caacaaggag
     1141 ttgttcatat atttttaaag gtttttggtt ttggttttga ggaactcatt atttacccct
     1201 gggtggcctg gaactcactc tgtagaccag gctggacctg ctcctgcctc ccgagtgctt
     1261 ggattaaacg tttgctccat catggctgag caagttgttt catttttgtt ttctaattat
     1321 gtaagtatgt gcacgtgtac atgcgtgcac atgagtgtgc acacaggaga gcgtaagaga
     1381 gtcagagcgc tggtcctccg caagagcagt acaaacgtct aaccactgag ccctctctct
     1441 aggccctaga gatatttttg ggatacagtg gaatgttttg atgtatgtgg gcattataga
     1501 ataattaaat aaggctattt aacatgtctg ttacctccca tacttggata tgtggtataa
     1561 ccatttaaga acctgatcaa ttttgacata cttatttgct ctatacagtc tagccaaagg
     1621 attatctacc ataactcttt cttatttttc ttgctgttgt gtttgaatga gttagtttat
     1681 taagcatgta acaagcacaa gtagaaaaat agcatgtggc agacaagcag cagatacatc
     1741 attaacaaag tatcattaga tcagacaact ggagtggcct gattgagaga gcaaaggcaa
     1801 catcgcattt agccacatcc agcagacatt gactggggag gccacataga agcagtctat
     1861 tgggttccca attgatagag agtcaatgga gcagatcgtg acctaggatg agatttccaa
     1921 gttaaaaaca gcacaaatag taccagaacg ataatatcaa attggggggt ggggcttaca
     1981 aacctccaat agaaaccacc tggggaagtt gaagccgtca gcctggagtt tctgattgaa
     2041 tttgggctcc gtgaataacc ttctcatggc tgaacttctg gcctcttatt tctgctgcag
     2101 atattttttt actctatgag atatacagta acaaggttgg aatagtttag tttctagcag
     2161 ttctcaaggg tgcaatgctt taatgccctt agccgcttgc tgacctccct ccgccaagcc
     2221 ccggacggag ccaggaattc acctgaccca gaacaggctg ttttagaaga tgcttgacaa
     2281 taacatgctt gggtctgaag ggggagcgag gagcttctca gctcaaacat cacatggcaa
     2341 tttggcaatc taatgcacgc cctattgctt ttttttgttg gtctggcttg gttttttgag
     2401 acaatgtctg tctgtgtagc cctagctgac ctggaactcg ctctgtagac caggctggcc
     2461 tctgcctccc gagtgctggg aggcatgcac caccactgcc tggcacagta ttacattatt
     2521 gttaagttaa acttcatcct cttgattagc agtggcttgc agtttaccag caggtcctgt
     2581 ccacgatcgt tttttaagct gaagtttccc tgggcccctt gcactaccta cctgtcctgc
     2641 tccccttaat ttaactgtat gggagcagtt gtgtgtgctt gaagtttctc ctctggtcac
     2701 acaataaaat ttgttgattt catccggatc tagtgctacc cacaaatgtt ttgtgcatgg
     2761 ccccatggca catggagact cgtggataag attgggaaga actcggtata gattgttgat
     2821 ctggacggcc tggcttctac cagctgaggt gcatcccagc tctagaaact gaaatgccca
     2881 gtatgagaac ccacctcata tctatgccct tgcagacagt atgtacagaa acatgatcat
     2941 cgacagagag aaccagtgtg tcatcatcag tggtgaaagt ggtgctggaa agacagtagc
     3001 tgccaagtac atcatgagct acgtctccag agtgtccgga ggaggcccca aggtccagca
     3061 tgtcaaggac atcatccttc agtccaaccc actcctggag gccttcggga atgccaagac
     3121 agtccgcaac aacaactcca gccgatttgg aaaatacttt gaaatccagt tcagtccagg
     3181 tggggaacca gatggtggca agatctccaa cttccttctg gaaaagtcca gagtggtgat
     3241 gaggaacccg ggagaacgga gcttccacat attctaccag ctcatcgagg gcgcctctcc
     3301 agagcagaag caaagccttg gtatcaccag catggactac tattattacc tgagcctctc
     3361 agggtcatac aaggttgatg acattgatga caagcgggat ttccaggaaa ccctgcacgc
     3421 catgaatgtg attgggatct tctcagagga gcagactctc gtgctgcaga ttgtggctgg
     3481 aattctccac ttgggaaaca tcaacttcaa ggaagtgggc aactatgcgg ccgtggagag
     3541 cgaagaattt ttggcttttc ctgcgtatct gctgggtata aaccaagacc ggttaaaaga
     3601 gaagctgacg agccggcaga tggacagtaa gtggggagga aagtcagagt ccatccatgt
     3661 gaccctcaat gtggagcagg cctgctacac cagggatgcc ctcgccaagg ccctgcacgc
     3721 gcgagtcttt gatttcttgg tggattccat caataaagct atggagaagg accacgagga
     3781 gtacaacatt ggtgtcctgg acatctatgg ctttgaaata tttcagaaaa atggcttcga
     3841 gcagttctgc atcaatttcg ttaatgaaaa attacagcag atttttatcg agctgacgct
     3901 aaaggccgag caggaagaat acgttcagga ggggataaga tggacaccca ttgaatattt
     3961 caataataaa attgtgtgtg acctcataga gagcaaagtc aaccctcctg gaattatgag
     4021 catcctggat gacgtgtgtg ccaccatgca tgctgtgggt gagggtgctg accagacact
     4081 gctacagaag ctccagatgc agatcgggag ccatgagcac tttaacagct ggaaccaagg
     4141 tttcattatt caccactatg ctgggaaggt ttcctatgac atggatggct tctgtgaaag
     4201 gaaccgggat gtgctattca tggacctgat tgagctcatg cagagcagtg agctgccttt
     4261 tataaagtct ttatttcctg aaaacctgca agccgacaag aaagggcgcc caacgactgc
     4321 aggaagcaaa ataaagaaac aagccaatga cctcgtgagc accctgatga aatgtacacc
     4381 ccactacatt cgctgcataa aaccgaacga aaccaagaag cccaaagact gggaggagag
     4441 cagagtgaag catcaagtgg agtacctggg tctcaaggaa aacatccgag tgagaagggc
     4501 tggttatgct tatcggcgtg tcttccagaa atttctacag aggtatgcca ttctgaccaa
     4561 agctacctgg cctgtgtgga gaggagatga gaaacaaggt gtcctccatc tgctacagtc
     4621 tgtcaacatg gacagcgacc agttccagct cgggaggagt aaagtgttca tcaaagcccc
     4681 ggagtctcta tttcttctgg aagagatgag agagagaaag tatgatgggt acgcacgcgt
     4741 gatacagaaa acatggagga agtttgtggc ccgcaagaag tatgtccaga tgagagaaga
     4801 cgcctcagac ctgttgttga acaagaagga gaggaggaga aacagcatca accgaaactt
     4861 catcggggac tacatcggga tggaggagca cccggagctc cagcagtttg tgggcaagag
     4921 ggagaagatt gactttgctg acatagtcac caagtatgac aggaggttca agggtgtcaa
     4981 gcgagacctg ctgctaaccc caaagtgctt gtacttaatt ggaagggaga aggtgaagca
     5041 aggcccggac aaaggtcttg tgaaggaagt cctgaagcgg aagatcgagg tggaaaggat
     5101 cctgtccgtg tccctcagta ccatgcagga tgacatcttc attctccatg agcaagagta
     5161 tgacagtttg cttgagtccg tctttaaaac agagttcctg agccttttaa caaagcgata
     5221 tgaggaaaaa acccagaagc aactacctct gaaattcagc aatacccttg aactgaagtt
     5281 gaaaaaggag aactggggtc cctggagtgc tgggggctcc cggcaagtgc agttctacca
     5341 aggcttcggt gacctggcca tcctcaagcc cagcaacaaa gtgctgcagg tcagcattgg
     5401 acctgggctg cccaagaacg cccgtcccac cagaagaaac actgtctcaa gcagagggta
     5461 ttctggtgga actaacaaca attacccgat gagagccgcc cctgctcccc caggatgcca
     5521 tcgaaatggc ctcaccagaa accagtttgt gcatcctccc cgtgcctctg gaaaccagag
     5581 gtccaatcag aaaagcctat acacctctat ggcccgccca cccttgccaa ggcaacagtc
     5641 cacaggctca gaccgattgt ctcagacacc ggagagcctg gatttcctca aggtcccgga
     5701 ccagggtgct gctggagtcc gaagacaaac gaccagccgg cctcccccag caggcggcag
     5761 accaaagcct cagcccaagc ctaagcctca ggtgccgcag tgcaaggctc tgtatgccta
     5821 cgatgctcag gacacagacg aactcagctt caatgccaat gacgtcatcg atattattaa
     5881 ggaagatcct tctggctggt ggacgggtag actacgaggc aagcagggcc tgtttcctaa
     5941 caactatgtc accaagatct gaggcgccca gaaattgtca tgcaggcaga ggagctccag
     6001 acgtggactg gggaggggac tttttgggga ctccccttct gatccacaat gagcaactgc
     6061 tactccaagg tctgaagcta ttctggtacc ttccccatgg aagacgcaga aaagcttggg
     6121 atgggaacaa ggagtttcac tccgtaaatg atcctaaaag gtagtctagt tcccaggagc
     6181 gccaaaacaa ccacccacta agatttattt attgtattta aatctggtga aagcagcagg
     6241 ggctgctggg tgtctatccc gcagcctcca gcgcactcac caagcccagg ggacagcagg
     6301 tggtgactat gacaagtgcc tttagttgaa gagcacgttt cattcattcc tctcttccat
     6361 acctgataca ttcctttctg ctaaccctcc ttcagggagg acccaccctc tgcaggctgg
     6421 acttggtgtg aacaggcact cacctgtcaa tgccaagggc aggccgtcct tccaagccca
     6481 tgggagccag ggccactaag actgctggtg gggaggaagt tgggtgctgg gctgactgat
     6541 ggtcttgctt tcccttggtc tttgcttgta atgtggctgg cccatgttgg ttttatgttt
     6601 aatgttgtgc ttataagaag aaagatcccc ccccccaccc aagctgtaca tttataaaaa
     6661 agtgaccata tactgtatat agaaaagtct agaagcacgt atgaatgccg caggtagtat
     6721 tccactgtac ccattcgtga aggtaggttt tattacagga tttgcaccag gtacttacag
     6781 acgccccctc tcctctttgc ctagagagac agtcactgca ttcctgcaca gcccctcaga
     6841 ccccctgacc ctctccatgt aggtaaatct cctgtcaccc ctctgccgtc ctcccctacc
     6901 tcctcaataa atgtaacgga gtcagtgcaa
//
