LOCUS       NM_001411603            3299 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus MYCL proto-oncogene, bHLH transcription factor
            (Mycl), transcript variant 2, mRNA.
ACCESSION   NM_001411603 XM_006238793
VERSION     NM_001411603.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Kopecky BJ, Decook R and Fritzsch B.
  TITLE     N-Myc and L-Myc are essential for hair cell formation but not
            maintenance
  JOURNAL   Brain Res 1484, 1-14 (2012)
   PUBMED   23022312
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000162.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001411603.2.
            
            On Aug 29, 2022 this sequence version replaced XM_006238793.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760476 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               JACYVU010000162.1  49824327-49824524
            199-703             JACYVU010000162.1  49824888-49825392
            704-3299            JACYVU010000162.1  49828284-49830879
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3299
                     /gene="Mycl"
                     /gene_synonym="Lmyc1; Mycl1"
                     /note="MYCL proto-oncogene, bHLH transcription factor"
                     /db_xref="GeneID:298506"
                     /db_xref="RGD:1588591"
     exon            1..198
                     /gene="Mycl"
                     /gene_synonym="Lmyc1; Mycl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..1317
                     /gene="Mycl"
                     /gene_synonym="Lmyc1; Mycl1"
                     /note="isoform 2 is encoded by transcript variant 2; Avian
                     myelocytomatosis viral (v-myc) related oncogene homolog 1,
                     lung carcinoma derived (Lmyc); protein L-Myc-1; v-myc
                     myelocytomatosis viral oncogene homolog 1, lung carcinoma
                     derived; v-myc avian myelocytomatosis viral oncogene lung
                     carcinoma derived homolog"
                     /codon_start=1
                     /product="protein L-Myc isoform 2"
                     /protein_id="NP_001398532.1"
                     /db_xref="GeneID:298506"
                     /db_xref="RGD:1588591"
                     /translation="MCVCAGCRASPSRRGAAPLQVAGGGSEGADMDFDSYQHYFYDYD
                     CGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGSGPGAVDPASGISPGEPWPGGGAGDE
                     AESRGHSKAWGRNYASIIRRDCMWSGFSARERLERVVSDRLAPGVPRGNPPKAPATPD
                     GTPSLEASNPAPATQCQLGEPKTQACSGSESPSDSEGEEIDVVTVEKRRSLDIRKPVT
                     ITVRADPLDPCMKHFHISIHQQQHNYAARFPPESCSQEGDPEPGAQEEALEIEAPKEK
                     EEEEEEEEEEEEIVSPPPVENEAPQSCHPKPVSSDTEDVTKRKNHNFLERKRRNDLRS
                     RFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKKMATEKRQLRCRQQQLQKR
                     IAYLSGY"
     exon            199..703
                     /gene="Mycl"
                     /gene_synonym="Lmyc1; Mycl1"
                     /inference="alignment:Splign:2.1.0"
     exon            704..3299
                     /gene="Mycl"
                     /gene_synonym="Lmyc1; Mycl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatcgcgct cccgcgtcga tcccgggagc gtcctggctg ccgtgtgcga gcgaggcggg
       61 gggagcgcgc gcagggggcg cgctcgtgag tgcggggccg cgcgctcggt ggcgcgcatg
      121 tgtgtgtgtg cgggctgccg ggcttccccg agccggcggg gagccgctcc gctccaggtg
      181 gcgggcggcg ggagcgaggg agcggacatg gacttcgact cgtatcagca ctatttctac
      241 gactatgact gcggagagga tttctaccgc tccacggcgc ccagcgagga catctggaag
      301 aaattcgagc tggtgccgtc gccccccacg tcgccgccct ggggctccgg tcccggcgcc
      361 gtggaccctg cctctgggat tagtcccggg gagccgtggc caggaggggg tgccggggac
      421 gaggcggaat ctcggggcca ttcgaaagct tggggcagga attatgcttc catcattcgc
      481 cgtgactgca tgtggagcgg cttttctgcc cgggaacggc tggagagagt ggtgagcgac
      541 aggctggccc caggagtgcc ccgggggaac ccgcccaaag cgcccgctac cccggatggc
      601 actcctagtc tggaagccag taacccggcg cccgccaccc agtgtcagct aggcgagccc
      661 aagactcagg cctgctccgg gtccgagagc cccagcgatt ccgaaggcga ggagatcgac
      721 gtggtgacgg tggagaagag acgatccctg gacatccgaa agccagtcac catcacagtg
      781 cgagcagacc ccctggaccc ctgcatgaaa cacttccata tctctatcca ccaacagcag
      841 cacaactatg ctgcccgttt tcctccagag agctgctctc aagaggggga tcctgagcca
      901 ggtgcccagg aagaggctct ggaaatagaa gctcccaagg agaaagagga ggaggaggag
      961 gaagaagagg aggaggaaga gatagtgagt cccccacctg tagaaaatga ggctcctcag
     1021 tcctgccacc ccaaacctgt cagttctgac actgaggacg tgaccaagag gaagaaccat
     1081 aacttcttag aacgaaaaag gaggaatgac ctccgctcac ggttcctggc cctgcgggac
     1141 caggttccca ccctggccag ctgctctaag gcccccaaag tcgtgatcct aagcaaggca
     1201 ttagaatact tgcaggcttt ggtgggggct gaaaagaaaa tggctacgga gaaaaggcaa
     1261 ctccggtgtc ggcaacagca actgcagaaa agaatcgcgt acctcagtgg ctactaactg
     1321 accaaaaagc ctgacttctc tgtcttacag acacaagctt attttttaac ctctctcccc
     1381 ctcttagtaa tttgcacatt ttggttacag cggggcagtc tggacagtag atcccagaat
     1441 gcattgcagc cagtgcacac acaataaggg cttgcattct tggtaacctc gaaacccaat
     1501 tctccctctt ctctgactca tgggaatgct gtccttctct ggcgcctttg gcttctcagc
     1561 aggcagctac tgtggagatt tggggtctgc ttagctcact agctcctgac gaaaggctga
     1621 cagatgctat gcaacaggtg gtggacgatg tcggggctac agcctacatg aaatctcaca
     1681 ctgtgctgga gctttaggct aggaaaggat gctgctctca ctgctgtctc tggggatgat
     1741 atgaggacag ctgggcctgg atactgtctc ccccaggctc tgttttccag gagaccagcg
     1801 agctgtcctg ggcaaagaca agctcgccaa cttgatcagc gtggaccatt acctcattgt
     1861 cagacacttt acagtagctg aggagtggaa acctttaaga tatattagga tgttaggcca
     1921 cacccttccc tccactctca acgctatgac tttgagaaca ttgaaagggc ttggcctgta
     1981 gagtctttgt cccagagctc tctgggcctt ctctgagagg gacctttcta tcctcacaag
     2041 ggaccttttt gtttcttcct gcctttgtta tgcaatggcc accacagcac cctttcacac
     2101 agaccagaaa tgtttccctg ggacataggg aaatggggtc gcagcccagg acctggggaa
     2161 gacttggcat cctgactcat gaacaacgtt ccgtgcccag gtttcccgaa gggctatttg
     2221 aagcccagct tggaatcttt tctctggctg gatataaggt gcctcggaag aacgagccct
     2281 atcagcccta tcgcttcctc ttttcccacc tgcctctcaa gtcagagctt gactctgtct
     2341 acattctgcc agaaaagtgc aaacctgtcc ttctccagca acttcaagga gtttgctggc
     2401 tccgcggcta ccatcttggt tctctgccag cctgagtcac atcctttccc ccagaatctg
     2461 ggccttacag agagattcag aggggagcca ctcggattca cctgatgccc cagaaggtgc
     2521 acttactccc tggggcctgt cagggtgcct ctaggagtgc gactccgcca actaggagag
     2581 tttgctccag ccgtcttcgg cggctccagg tggaatctaa gtacagccct caatctaaga
     2641 aagtcacccc agctagcagc agtcaggcga gcatcctcgg gagatcctaa gctttgccta
     2701 aaagaaggat cagcctttcc agaactttac ccaggaaggc aaatcgcttc ctgctggccc
     2761 tgggcttgga agtaagggaa cggtgtgggg gatagacagt aaatacaact tttgactctc
     2821 aaaaaaaaaa aaaaaaaaaa aaaaacagct accacttcca aatcggctcc caaccatgat
     2881 ggcctccact cgcttcctgg cctcgagtcc tagagaaggc tttggaagta gctgttgtag
     2941 ctgttggggt agggcttcta ggcaccaaga aactcccgga actgtcttgg gaggacaagt
     3001 ggtgaacagg ctaacgtctc atctgaatgg cttgtgtttt atgagctgct gctgggttac
     3061 atgctgtggg cgtccttttt tttttttttt ttttttaata ctgtattttt gtatgctttt
     3121 ttgcaaagtg gtgttaactg tttttgtata agaaaaaaaa aaaaccctcc tgttgcaagg
     3181 gtctggttta ttttgaaagg caagtttacc tgaaattttg tatttagttg taatcattaa
     3241 ttgcttgatt ttaaactgtt gccttctggg acatcttcta ataaaagatt tctcaaaaa
//
