LOCUS       NM_001415761            2977 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus Mycbp associated protein (Mycbpap), transcript
            variant 3, mRNA.
ACCESSION   NM_001415761 XM_039086537
VERSION     NM_001415761.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Reisinger,E., Zimmermann,U., Knipper,M., Ludwig,J., Klocker,N.,
            Fakler,B. and Oliver,D.
  TITLE     Cod106, a novel synaptic protein expressed in sensory hair cells of
            the inner ear and in CNS neurons
  JOURNAL   Mol Cell Neurosci 28 (1), 106-117 (2005)
   PUBMED   15607946
  REMARK    GeneRIF: Cod106 is expressed in auditory and vestibular hair cells,
            as well as in distinct sets of CNS neurons with particularly high
            abundance in hippocampus and cerebellum.(Cod106)
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Yukitake,H., Furusawa,M., Taira,T., Iguchi-Ariga,S.M. and Ariga,H.
  TITLE     AMAP-1, a novel testis-specific AMY-1-binding protein, is
            differentially expressed during the course of spermatogenesis
  JOURNAL   Biochim Biophys Acta 1577 (1), 126-132 (2002)
   PUBMED   12151104
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 29, 2022 this sequence version replaced XM_039086537.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.65493.1,
                                           SRR26360181.2786254.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-158               JAXUCZ010000010.1  79967171-79967328   c
            159-286             JAXUCZ010000010.1  79960468-79960595   c
            287-446             JAXUCZ010000010.1  79959712-79959871   c
            447-550             JAXUCZ010000010.1  79959498-79959601   c
            551-734             JAXUCZ010000010.1  79958730-79958913   c
            735-850             JAXUCZ010000010.1  79958381-79958496   c
            851-992             JAXUCZ010000010.1  79957813-79957954   c
            993-1108            JAXUCZ010000010.1  79956136-79956251   c
            1109-1224           JAXUCZ010000010.1  79955935-79956050   c
            1225-1336           JAXUCZ010000010.1  79955430-79955541   c
            1337-1526           JAXUCZ010000010.1  79954310-79954499   c
            1527-1714           JAXUCZ010000010.1  79953770-79953957   c
            1715-1861           JAXUCZ010000010.1  79952590-79952736   c
            1862-2248           JAXUCZ010000010.1  79951590-79951976   c
            2249-2370           JAXUCZ010000010.1  79951230-79951351   c
            2371-2483           JAXUCZ010000010.1  79949796-79949908   c
            2484-2629           JAXUCZ010000010.1  79949210-79949355   c
            2630-2800           JAXUCZ010000010.1  79948859-79949029   c
            2801-2977           JAXUCZ010000010.1  79947200-79947376   c
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2977
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /note="Mycbp associated protein"
                     /db_xref="GeneID:494192"
                     /db_xref="RGD:1359123"
     exon            1..158
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..2902
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /note="isoform 3 is encoded by transcript variant 3;
                     MYCBP-associated protein; cochlea derived protein of 106
                     kDa; organ of Corti membrane-associated protein of 106
                     kDa"
                     /codon_start=1
                     /product="MYCBP-associated protein isoform 3"
                     /protein_id="NP_001402690.1"
                     /db_xref="GeneID:494192"
                     /db_xref="RGD:1359123"
                     /translation="MKALKKESRVKMPTSKFLEVSENVKEKKRAKAPEQPTPPIQEEP
                     EPVSNVLQGDDILALAIKKEDLTKQHIPQFEETGEKPVVTQKFIIRKLKPKDSCKRVY
                     HLVAHPANPDATTKPLDYSGPRDSFLSSDQILPHQILGSLQDFKRIAVARGNTQLAKL
                     INIQPCLMTLISAKEEPKPKSPKEEKRPPWAPPLQHNFLKNWRRHITLRKKQQEVLSE
                     HLKKPASELLMNSGEGYRKIQEEREAIDRALPTQHDRKAMNCFWSPLEYLGDEKSGLL
                     MTKKKKQRGLVEPITHIRKPFSIQMETGLPVQKDAWYRYTWDRSLFLIYRRKELQNIM
                     AELDFSQQDIDGLEVVGHGKPFSSVTVEEPLPLEKSQKSSSEDTVFLDSLTNLSDMVP
                     MPILGPSLLFCGKPACWIRGSNPEDKKNIGIGVRLTFETLEGEKTSSELTVVNNGTVA
                     IWYDWRRRPQQDFFQDLKQNRTQRFYFNNREGVILPGETKHFTFFFKSRNAGIFMESW
                     EFGTHPTLLGGAALQITLHAISLTQDIFMDERKLLESKLAAHEAVTIAQSVLQDLLRG
                     VSTPERAPSPVDAYLTEEDLFHYRNPRLHYQHRVVQNLHQLWQQYTEAKASQEEALNL
                     RTPTVPLLFVEKPPDHSRTLASEYPQLQPHQEMDTLKDPKNSLLPQKTGISTKSMQRK
                     SIMEEILVEEGPDRENTRSPRVLENLPPPKWNLCLEDFRQAVMTFPEELQREDALIQL
                     NKAAMELCQEQKPLQSDLLYQMCLQLWRDVIDSLVSQSLWLRSLLGLPEKETVYLDIP
                     DEGQKSPPVTEVKVTSGKLGKEDRRGGAQEKKQLSARDKEEKKGSKTPSKEDRLNSKK
                     QKAKDDKKVVKSTSRDRLLSEDPPADSSATSQEPIDPLVMEKYTQRLYSEVYGLLDNL
                     VIDMMVLADELGSEKNVEEPLRFCT"
     exon            159..286
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            287..446
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            447..550
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            551..734
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            735..850
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            851..992
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1108
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1224
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1336
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1526
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1714
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1715..1861
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..2248
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            2249..2370
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            2371..2483
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            2484..2629
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            2630..2800
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
     exon            2801..2977
                     /gene="Mycbpap"
                     /gene_synonym="COD106"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggatcgcgg tgggctgcca agctgagcag taatcttggg ggcggggagc gcagggccac
       61 gctggtaacc cagggcggca ccatgaaggc tctcaagaag gaatcccgtg tcaaaatgcc
      121 aaccagcaaa ttcttggagg tctcggagaa cgtcaaagaa aagaagcggg cgaaggcacc
      181 tgaacagccc acccccccca tccaggaaga gcctgagcct gtcagcaatg tcttacaagg
      241 agatgacatt cttgccttgg ccatcaaaaa ggaagacttg acgaagcaac acattcctca
      301 gtttgaagaa acaggagaaa agcctgtggt tacacagaag tttatcatcc gtaagctcaa
      361 accgaaagat tcttgcaaaa gggtctacca cttggtagca catcctgcta atccagatgc
      421 caccacaaag cctctggact actccggtcc tcgggacagc ttcttaagta gtgaccagat
      481 cctccctcac cagatcctgg ggagtcttca ggactttaaa agaatcgcag ttgctcgggg
      541 aaacacccag ctggctaaac tgatcaatat ccagccctgc ctgatgaccc tcatctcagc
      601 taaagaagag ccaaagccaa agtccccaaa ggaggagaag aggcctccat gggccccacc
      661 tcttcagcac aacttcctca agaactggag acggcacatc accttgcgga agaagcaaca
      721 ggaagttctc agtgagcacc tgaagaagcc agcaagtgag ctgttgatga acagtgggga
      781 gggctacaga aagatccagg aagagcgaga ggccattgac cgtgcacttc ctacccagca
      841 tgacagaaaa gcgatgaatt gtttctggag cccgctggaa tacctgggtg atgagaagtc
      901 aggtcttctc atgaccaaga agaaaaagca gcgtggtctg gtggaaccca tcacacacat
      961 caggaagccc ttctctatcc aaatggagac tggattacca gtgcagaagg atgcttggta
     1021 ccgctacacc tgggaccgga gtctgtttct catctaccga cgcaaggagc tacagaatat
     1081 catggcagag ctggatttca gccagcagga tatcgatggc ctggaggtgg tgggccatgg
     1141 gaaacccttc tcatctgtca cagtggaaga acctttgcca cttgaaaaga gccagaagag
     1201 ctcctcggaa gacacggtat ttctagactc attgaccaac ctctccgaca tggtccctat
     1261 gcctattctc ggcccttcac tgctgttctg tgggaagcca gcttgctgga tcagaggcag
     1321 taacccagag gacaagaaaa acattggaat tggtgtccgc ctgacatttg aaacccttga
     1381 aggggagaaa acatcttcag aactgactgt ggtcaataac ggcactgtgg ccatttggta
     1441 tgactggaga aggcggcccc agcaggattt tttccaagac ttaaagcaaa acaggacaca
     1501 gagattttac tttaacaacc gggaaggtgt gattctgccc ggggaaacca aacactttac
     1561 cttcttcttc aagtctcgga atgctggcat cttcatggaa tcatgggagt ttgggaccca
     1621 tcctacgctc ctgggaggtg cggcccttca gatcaccctc catgccatct cactgaccca
     1681 ggacattttt atggatgaga ggaagttgtt ggagagtaag ctggctgctc atgaggctgt
     1741 caccattgct cagagcgtgc tgcaggactt actgaggggc gtctctactc cagagcgtgc
     1801 accatcccca gtggatgcct atctcaccga ggaggacttg ttccactaca ggaatcctag
     1861 gttgcattac cagcatcgag tggtgcaaaa cttgcaccag ctgtggcaac agtacacgga
     1921 ggccaaggca tcccaggagg aagccctcaa ccttagaact ccgacagtgc cgttactgtt
     1981 tgttgagaag cccccagatc acagcaggac cctggcctca gagtacccac aactgcaacc
     2041 tcatcaggag atggacaccc tcaaggatcc taaaaattcc ctcctgcctc agaagactgg
     2101 catcagcacc aagagtatgc aacggaagag catcatggag gagattctgg tggaggaggg
     2161 tccggacagg gagaacacca ggagccccag ggttctggaa aaccttcccc cgcctaaatg
     2221 gaacctgtgc ctagaggact tcagacaggc agtgatgacc ttccctgagg agctccagag
     2281 agaggatgct ctcatccagc tcaacaaggc agcgatggag ctgtgccagg agcagaagcc
     2341 actgcagtcc gacctcctgt accagatgtg tttgcagctg tggcgagatg tgattgacag
     2401 cctagttagc cagtccctgt ggctaagaag tcttctaggc ctgcctgaga aggagacggt
     2461 ttatttggat attccagacg aaggtcaaaa atcccctcca gtcacagagg tgaaggtgac
     2521 atccgggaaa cttggaaagg aggatcggag agggggtgcc caggagaaga aacaactgag
     2581 tgccagagac aaagaggaaa aaaagggttc caagacacca tcgaaagagg accgcctgaa
     2641 tagcaaaaaa cagaaggcaa aagatgacaa gaaagtggtg aagtccacaa gccgggacag
     2701 gctgctctca gaagatcctc ccgctgacag ctcggcaacc tcacaggagc ccatagaccc
     2761 cctagtcatg gagaaatata cccagcggtt gtactctgag gtctatgggc tgctggacaa
     2821 cctggtgata gacatgatgg tcctagcaga tgagctcggc tccgaaaaga atgttgaaga
     2881 gcctttacgt ttttgtacct gattcttggg cccaagcttc ctcctggaaa ggtggtttga
     2941 aaaaaagtca ataaagaatc tttaggtttc aaccatt
//
