LOCUS       NM_031668               4135 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus MYB binding protein 1a (Mybbp1a), mRNA.
ACCESSION   NM_031668 XM_006246802
VERSION     NM_031668.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4135)
  AUTHORS   Akaogi,K., Ono,W., Hayashi,Y., Kishimoto,H. and Yanagisawa,J.
  TITLE     MYBBP1A suppresses breast cancer tumorigenesis by enhancing the p53
            dependent anoikis
  JOURNAL   BMC Cancer 13, 65 (2013)
   PUBMED   23388179
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4135)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 4135)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 4135)
  AUTHORS   Kumazawa,T., Nishimura,K., Kuroda,T., Ono,W., Yamaguchi,C.,
            Katagiri,N., Tsuchiya,M., Masumoto,H., Nakajima,Y., Murayama,A.,
            Kimura,K. and Yanagisawa,J.
  TITLE     Novel nucleolar pathway connecting intracellular energy status with
            p53 activation
  JOURNAL   J Biol Chem 286 (23), 20861-20869 (2011)
   PUBMED   21471221
REFERENCE   5  (bases 1 to 4135)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 4135)
  AUTHORS   Foster,L.J., Zeemann,P.A., Li,C., Mann,M., Jensen,O.N. and
            Kassem,M.
  TITLE     Differential expression profiling of membrane proteins by
            quantitative proteomics in a human mesenchymal stem cell line
            undergoing osteoblast differentiation
  JOURNAL   Stem Cells 23 (9), 1367-1377 (2005)
   PUBMED   16210410
REFERENCE   7  (bases 1 to 4135)
  AUTHORS   Fan,M., Rhee,J., St-Pierre,J., Handschin,C., Puigserver,P., Lin,J.,
            Jaeger,S., Erdjument-Bromage,H., Tempst,P. and Spiegelman,B.M.
  TITLE     Suppression of mitochondrial respiration through recruitment of
            p160 myb binding protein to PGC-1alpha: modulation by p38 MAPK
  JOURNAL   Genes Dev 18 (3), 278-289 (2004)
   PUBMED   14744933
REFERENCE   8  (bases 1 to 4135)
  AUTHORS   Keough,R.A., Macmillan,E.M., Lutwyche,J.K., Gardner,J.M.,
            Tavner,F.J., Jans,D.A., Henderson,B.R. and Gonda,T.J.
  TITLE     Myb-binding protein 1a is a nucleocytoplasmic shuttling protein
            that utilizes CRM1-dependent and independent nuclear export
            pathways
  JOURNAL   Exp Cell Res 289 (1), 108-123 (2003)
   PUBMED   12941609
REFERENCE   9  (bases 1 to 4135)
  AUTHORS   Szpirer,C., Van Vooren,P., Riviere,M., Scohy,S., Collau,G. and
            Szpirer,J.
  TITLE     Localization of 54 rat genes, and definition of new synteny groups
            conserved in the human and the rat
  JOURNAL   Mamm Genome 11 (9), 729-735 (2000)
   PUBMED   10967130
REFERENCE   10 (bases 1 to 4135)
  AUTHORS   Wuarin,J. and Schibler,U.
  TITLE     Expression of the liver-enriched transcriptional activator protein
            DBP follows a stringent circadian rhythm
  JOURNAL   Cell 63 (6), 1257-1266 (1990)
   PUBMED   2261643
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Jan 7, 2022 this sequence version replaced
            XM_006246802.3, NM_031668.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.37483.1,
                                           SRR26643297.34630.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               JAXUCZ010000010.1  57555458-57555665
            209-304             JAXUCZ010000010.1  57555770-57555865
            305-388             JAXUCZ010000010.1  57556467-57556550
            389-463             JAXUCZ010000010.1  57556635-57556709
            464-571             JAXUCZ010000010.1  57556799-57556906
            572-747             JAXUCZ010000010.1  57557604-57557779
            748-915             JAXUCZ010000010.1  57557870-57558037
            916-1033            JAXUCZ010000010.1  57558146-57558263
            1034-1329           JAXUCZ010000010.1  57558857-57559152
            1330-1440           JAXUCZ010000010.1  57559349-57559459
            1441-1566           JAXUCZ010000010.1  57559836-57559961
            1567-1734           JAXUCZ010000010.1  57560098-57560265
            1735-1834           JAXUCZ010000010.1  57560352-57560451
            1835-1931           JAXUCZ010000010.1  57561322-57561418
            1932-2083           JAXUCZ010000010.1  57561498-57561649
            2084-2167           JAXUCZ010000010.1  57561924-57562007
            2168-2320           JAXUCZ010000010.1  57562096-57562248
            2321-2488           JAXUCZ010000010.1  57562325-57562492
            2489-2649           JAXUCZ010000010.1  57562580-57562740
            2650-2893           JAXUCZ010000010.1  57563058-57563301
            2894-3025           JAXUCZ010000010.1  57563415-57563546
            3026-3094           JAXUCZ010000010.1  57563633-57563701
            3095-3208           JAXUCZ010000010.1  57564102-57564215
            3209-3310           JAXUCZ010000010.1  57564352-57564453
            3311-3459           JAXUCZ010000010.1  57564883-57565031
            3460-4135           JAXUCZ010000010.1  57565144-57565819
FEATURES             Location/Qualifiers
     source          1..4135
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..4135
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /note="MYB binding protein 1a"
                     /db_xref="GeneID:60571"
                     /db_xref="RGD:62062"
     exon            1..208
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..4051
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /note="PIP; MYB binding protein (P160) 1a; PAR-interacting
                     protein"
                     /codon_start=1
                     /product="myb-binding protein 1A"
                     /protein_id="NP_113856.2"
                     /db_xref="GeneID:60571"
                     /db_xref="RGD:62062"
                     /translation="MAEMKSPTKAEPASPAEAPQGDRRSLLEHSREFLDFFWDIAKPD
                     QETRLRATEKLLEYLRTRPSDSEMKYALKRLITGLGVGREAARPCYSLALAQLLQSFE
                     DIQLCDILGQIQEKYNLQAMNKAMMRPTLFANLFGVLALFQSGRLVKDKEALMKCVRL
                     LKILSHHYNHLQGQPVKALVDILSEVPESMFQEILPKVLKGDMKVILSSPKYLELFLL
                     ARQRVPAELESLVGSVDLFSEDNIPSLVNILKVAANSVKKEQKLPDVALNLLRLALQE
                     NKFERFWKEVLEEGLLKKPSYTSSYMCFRLLGASLPLLSDEQLQLVMRGDLIRHFGEH
                     MVVSKSQNPLRFIPEISAYVGTFLEGCQDDPKRQFTVMVAFTAITNQGLPVMPTFWRV
                     TRFLNTEALQNYVTWLRDMFLQPDLDSLVDFSTANQKRVQVASLNVPERTVFRLRKWI
                     IHRLVSLVDHLHLEKDEAVVEQIARFCLFHAFFKTKKATPQIPETKQHFSFPLEDGNR
                     GVIVSAFFSLLQTLSVKFRQTPDLAENGKPWTYRLVQLADMLLKHNRNVANVTPLTAQ
                     QRQAWDQMMSTLKELEAQSSETRAIAFQHLLLLVGLHLFKSPAESCDVLGDIQTCIKK
                     SMEQNLRRSRSRAKASQEPVWVEVMVEILLSLLAQPSNLMRQVVRSVFGHVCSHLTPR
                     GLQLILAVLNPETNEDEEDNVVVTDTDEKQLKHGEDADSDSEDSKNSESDVDSEDGEE
                     SEEEDRDKDVDPGFRQQLMEVLQAGNALGGEEEEEEELGDEAMMALDQNLASLFAEQK
                     MRIQARHEEKNKLQKEKQLRRDFQIRALDLIEVLVTKQPEHPLILELLEPLLNIIQRS
                     MRSRGSTKQEQDLLHKTARIFMHHLCRARHYCHEVEPGAEALHAQVERLVQQAGNQAD
                     ASVALYYFNASLYLLRVLKGNTTKRYQDGQKLEGADIKSEPKDSEVQTTSCLDLDFVT
                     RVYSASLESLLTKRNSPLTIPMFLDLFSRYPVICKNLLPIVVQHVAGSSRPRHQAQAC
                     LLLQKALSARELRVCFEDPEWEQLISQVLGKTTQTLQTLGEAQSKGEHQRELSILELL
                     NTVFRIVNHEKLSVDLTAFLGMLQGKQQKLQQNLQQGNHSSGSSRLYDLYWQAMNLLG
                     VQRPKSEKKNVKDIPSDSQSPISTKRKKKGFLPETKKRKKLKSEGTTSEKKAASQQDA
                     VTEGAMPAATGKDQPPSTGKKRRKRVKANTPSQVNGVTVAKSPAPNNPTLSPSTPPAK
                     TPKVQKKKEKLSQVNGSTPVSPVEPESKKHQKALSTKEVKRRSSQSALPKKRARLSLV
                     SRSPSLLQSGIRKRRVARRRVQTP"
     exon            209..304
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            305..388
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            389..463
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            464..571
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            572..747
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            748..915
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1033
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1329
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1440
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1566
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1567..1734
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1735..1834
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1835..1931
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1932..2083
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2084..2167
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2168..2320
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2488
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2489..2649
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2650..2893
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2894..3025
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            3026..3094
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            3095..3208
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            3209..3310
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            3311..3459
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
     exon            3460..4135
                     /gene="Mybbp1a"
                     /gene_synonym="DBP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtgtttgg ttcagcatgg cggagatgaa gagccctacg aaagctgagc ctgcgtctcc
       61 cgcagaagcg ccgcaaggcg accgccgcag cctgttggag cacagtcgcg agttcttgga
      121 cttcttctgg gacatcgcga agccggatca ggaaacgcgg ctccgggcca cggagaagtt
      181 gttggagtac ttgcgcacaa ggccgagtga ttcggagatg aaatatgccc tgaagcgcct
      241 aatcactggg cttggggtgg gccgagaagc tgctaggccc tgctacagtc tggcgctagc
      301 acagctgttg cagtcttttg aagacatcca gttgtgtgac atcctgggac agatacaaga
      361 aaaatacaat ctacaagcaa tgaacaaggc aatgatgaga cctactctct ttgcaaacct
      421 gtttggagtg cttgccctct ttcagtcagg acgcctagtg aaggataaag aagccctgat
      481 gaagtgcgtg agattgctga agatattgtc ccatcactac aaccacttac aggggcagcc
      541 agtaaaggct ctggtggaca tcctctccga ggtcccagag tccatgttcc aggagatcct
      601 gccaaaggtc ctcaaggggg acatgaaagt gatcctcagc tctcccaagt acttggagct
      661 cttcctcttg gctcggcaga gggtgccagc agagctcgag tcactggttg gctcggttga
      721 tctgttctca gaagacaaca ttcccagtct ggtgaatata ctgaaggtgg cggccaactc
      781 tgtaaagaag gagcagaagc tgcctgatgt ggctctgaac ctgctccgcc tggcacttca
      841 ggagaacaaa tttgaacggt tctggaagga ggttttggag gaggggctgc tgaagaagcc
      901 atcctataca tccagctaca tgtgtttccg cctactgggt gcatctctgc cgcttctgtc
      961 agatgagcag ttgcagttgg tgatgcgagg agacttgatc cgacattttg gggagcacat
     1021 ggtcgtttct aagtcccaaa acccgctaag gttcattcca gagataagtg catatgtggg
     1081 taccttcctc gaggggtgcc aggacgatcc caagcggcaa ttcactgtga tggtggcctt
     1141 cacggccatc accaatcaag gtctccctgt catgcctacc ttctggcgtg tcacgcggtt
     1201 cttgaatact gaagccctgc agaactacgt gacctggctg cgggacatgt tcctgcagcc
     1261 tgacctggac tccttggttg acttcagcac tgccaaccag aagagagttc aggtcgcctc
     1321 cttgaatgtg cctgagcgaa cagtattccg gctccggaag tggatcatcc accgcctggt
     1381 cagccttgtg gatcatctgc acctggagaa ggatgaagct gtggtcgagc aaatagccag
     1441 gttttgcttg ttccatgcct tctttaagac aaagaaagct actccccaga tcccagagac
     1501 aaagcagcac ttctccttcc ccttggagga cggcaaccgt ggggtcattg tcagtgcctt
     1561 cttcagccta ctgcagaccc tcagtgtgaa gttcagacag acaccagacc tggctgaaaa
     1621 tgggaagccc tggacttacc gcctggtgca gctggcagac atgctgttga agcataaccg
     1681 caacgtagcc aatgtgacac ccttgacagc acagcagcgt caggcctggg accagatgat
     1741 gagtacgctg aaggaactgg aggcccagtc ctcagagacc cgggccattg ccttccagca
     1801 cctgctgctt ctggtgggcc tccacctctt caagtcccct gcagaaagct gtgacgtcct
     1861 aggagacatt cagacttgca tcaagaaaag catggagcag aatctgcgcc gatcacgctc
     1921 tagagccaaa gcctcccagg agccagtgtg ggtggaggtg atggtggaga tcttgctgtc
     1981 cttgctggct caacccagta acctgatgcg ccaggtggtc cggagtgttt ttggtcatgt
     2041 ctgttcccac ctgactccac gtgggctaca gctaatcctg gctgtgctca accctgagac
     2101 aaatgaggat gaggaggaca acgtggtggt cactgacact gacgagaagc agctgaaaca
     2161 tggagaggac gcagactcag acagtgagga cagtaagaac tcagagagtg acgtggatag
     2221 tgaggatggg gaagaaagtg aagaggagga ccgtgataag gatgtggacc caggcttccg
     2281 acaacagctg atggaagtgt tgcaagctgg gaatgcactg ggtggagagg aggaggagga
     2341 ggaagagctt ggggatgagg ccatgatggc cctggaccag aacctggcca gcctatttgc
     2401 agagcagaag atgcgtatcc aggcccggca tgaggagaaa aacaagctgc agaaggagaa
     2461 gcagctccga cgagacttcc agatcagggc actagacctg attgaggtgc tggtgaccaa
     2521 gcagcctgag caccccctga tcctggaact tcttgagcca ctgctaaaca tcatccagcg
     2581 cagcatgcgc agcagaggct ccaccaagca ggagcaggac ctcctgcaca agaccgcccg
     2641 catcttcatg catcatcttt gtcgtgcccg ccactactgc cacgaggtgg agcctggcgc
     2701 agaggctctg catgcccagg tggagaggct tgtgcagcag gctggcaacc aggctgacgc
     2761 ctctgttgcc ctttactatt tcaatgcctc tctgtacctg ctgcgagtcc tcaagggcaa
     2821 caccactaag aggtaccaag acggtcagaa gttagaggga gcagacatca agtctgaacc
     2881 caaggactca gaggtccaga ctaccagttg cttggacttg gactttgtga cccgggtgta
     2941 ttcagcgtca ttggaatctc ttctgaccaa gcgtaacagc ccactcacca tccccatgtt
     3001 cctcgacctc ttctcccgat atccagtgat ctgtaagaac ttgcttccca tcgtggtcca
     3061 gcatgtggct ggctcatctc ggccccgcca tcaggcccag gcgtgcctgc tgctccagaa
     3121 ggccctgtct gcacgggagc tgagagtgtg ttttgaggat cctgagtggg agcagctgat
     3181 tagccaggtc ttgggaaaga ccacccagac cctgcagact cttggggaag cacagagcaa
     3241 aggggaacac cagagggagc tatccatctt ggagctgctg aacactgtct tcaggatagt
     3301 caatcacgag aagctgtctg tggacctcac tgctttcttg ggcatgcttc aaggcaagca
     3361 gcagaagctg cagcaaaacc tgcagcaagg gaatcactcg tctggctcca gtcgcctcta
     3421 cgatctctac tggcaggcca tgaacttgct tggagtgcag cgtccaaagt cagaaaagaa
     3481 gaatgtgaag gatattccta gtgacagcca gagtcccatt agcacaaagc ggaagaaaaa
     3541 gggattcttg ccagagacca agaagcgaaa gaaacttaaa tctgagggta ccacatcaga
     3601 aaagaaggct gcatcacagc aggatgcagt gacagagggt gccatgcctg ctgccactgg
     3661 taaagaccag ccccccagca caggcaagaa aagaaggaag agagtgaagg ctaacacccc
     3721 atcccaggtg aatggagtaa ctgtggccaa gagtccggct cccaataacc ccaccctgag
     3781 tcccagcacc ccccctgcca agaccccaaa agtgcagaag aaaaaagaga agctgtcaca
     3841 ggtgaatgga tccactcctg tgtcccccgt agagcctgaa agcaaaaagc atcagaaggc
     3901 tctcagcaca aaggaggtca aaagaaggtc ctcccagtct gccctgccaa agaaaagagc
     3961 aaggctgtct ctggtgagca ggagccccag cctgttacag agtgggatca ggaaaaggag
     4021 agtggccagg aggagagtcc agacaccttg agtgctatga tgtcccctcc tgtcagcagc
     4081 cctagagact cctatttttt caccaatatt ttaataaaca agccatgatc tagga
//
