LOCUS       XM_039094298            1224 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus multivesicular body subunit 12A
            (Mvb12a), transcript variant X2, mRNA.
ACCESSION   XM_039094298
VERSION     XM_039094298.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1224
                     /gene="Mvb12a"
                     /gene_synonym="Fam125a"
                     /note="multivesicular body subunit 12A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 28 ESTs, 4 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     153 samples with support for all annotated introns"
                     /db_xref="GeneID:290635"
                     /db_xref="RGD:735220"
     CDS             517..1026
                     /gene="Mvb12a"
                     /gene_synonym="Fam125a"
                     /codon_start=1
                     /product="multivesicular body subunit 12A isoform X2"
                     /protein_id="XP_038950226.1"
                     /db_xref="GeneID:290635"
                     /db_xref="RGD:735220"
                     /translation="MCVKLMPLGTADVVVSDVKLSGKTKTVPGYLRVGDIGGFAIWCK
                     KSKAPKLVPKPGTLSQDMRGLSLDQPKEPSKGSHPERTLSRLGSRASTLRRNDSIYEA
                     SSLYGISAMDGVPFTLHPRFEGKSCGPLNLSAFGDLTIKSLADIEKEYNYGFVVEKTA
                     AARLPPSVS"
ORIGIN      
        1 gaccctccga gggcgttagc tgccttttga actcccaggg aggatggatc ccgggacgga
       61 ttcaacgccg cttgccgccc tggtttggtc gtccgcctcg gcgccgccgc cgccgggttt
      121 cagcgcgatc acctgtaccg tggagggcgc gacggccagc ttcggccgag gcttcgcgca
      181 gaaggccggc tacttcctgt gcctgagcac actgggtatc ccagagaacc ctcaggacaa
      241 tgtggtagtg gacatgcaga tcgtgatgga caaggggccc ctgccaccag gcttctctac
      301 agtcaacgac cctcaggatg ccagctcttg cacagcgagt ccacctggag ctggctttcc
      361 ctgctctctg catagctcag ccttccctct cccttctccc ctgcctgacc cagctgcccg
      421 cctccccgat ggtgcttggt tctctcggtg tctttagtga cggctggcag gctgccgtgc
      481 agagggtcag ggacctctgt gtccaagaag aagcgcatgt gtgtgaagct gatgcccctg
      541 gggacggcag acgtggtagt gagtgacgtg aagctcagtg ggaaaaccaa gaccgtgcct
      601 gggtatctgc gagtggggga cattggtggc tttgccatct ggtgcaagaa atccaaagcc
      661 ccaaagctgg tgcccaagcc cggcacactc agccaggaca tgcgaggcct ctcactggac
      721 caacccaaag agcccagcaa aggtagccac ccagagcgga cactgtccag actgggctct
      781 cgggcttcca ccctaaggag gaacgactcc atctatgagg catccagtct ctatggcatt
      841 tcagccatgg atggggttcc ctttaccctg cacccgagat ttgagggcaa gagctgcgga
      901 cccttgaact tgtctgcctt tggggacctg acgattaaat cactggcaga cattgagaag
      961 gagtataact atggcttcgt ggtggagaag accgcagctg cacgcctgcc ccccagtgtc
     1021 tcatagccca gccacaggtg ccacctggcg ccacctgcct cacagacact gctgatcggc
     1081 cccagcctct cagcccggct acttgcacaa ggggtctctt gcctggtggt gcaggggcgg
     1141 cctgggcaga gcagtgacct tctctcagaa gtctgagtct agcagccaca tatgcaccag
     1201 cagtaaacac tacctggaac ctac
//
