LOCUS       XM_039109206            1332 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mutY DNA glycosylase (Mutyh),
            transcript variant X7, mRNA.
ACCESSION   XM_039109206
VERSION     XM_039109206.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1332
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /note="mutY DNA glycosylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 24 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
     CDS             177..1265
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X5"
                     /protein_id="XP_038965134.1"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
                     /translation="MQKWPTLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVTGV
                     VDGNVIRVLCRVRAIGADPTSSFVSHHLWDLAQQLVDPARPGDFNQAAMELGATVCTP
                     QRPLCSHCPVQSLCRAHQRVGQGQLSALPGSPDIEECALNTRQCQLCLPSTNPWDPNM
                     GVVNFPRKASRRPPREEYSATCVVEQPGATGGPLILLVQRPNSGLLAGLWEFPSVTLE
                     PSGQHQHKALLQELQHWSAPLPTTPLQHLGESLPPTPQVIHVFSHIKLTYQVYSLALE
                     GQTPASTTPPGARWLTWEEFRNAAVSTAMKKVFRVYEEHRQGTCKGSKRPQVCTPSSR
                     KKPSRGQQVLDRFFQRHIPTHKPNSTTQ"
ORIGIN      
        1 gcagcagcca ggccaaacct tctggcctcg atggcctggc caagcagaag agagaggagt
       61 tactgaagac ccctgtctct ccatatcacc tcttcagtga catagccgat gtcacagctt
      121 tccgaaggaa cctgctcagc tggtaaagga ggaggccaac ttggacagga gagcctatgc
      181 agaagtggcc aacgctacaa gacctggcca gtgcttccct ggaggaggtg aaccagctct
      241 ggtctggcct gggctactat tctcgaggtc gtcggctcca agaaggagct aggaaggtaa
      301 ccggtgtggt ggatgggaac gtcatacggg tgctgtgccg tgtccgcgcc attggtgctg
      361 atcccaccag ctcctttgtc tctcatcatc tctgggactt agcccagcag ctggtggacc
      421 cagcccggcc tggggatttc aaccaagcag ccatggagct gggagccaca gtgtgtaccc
      481 cacagcgccc tctctgcagc cattgtcctg tgcagagttt atgccgggca caccagaggg
      541 tgggacaggg acagctctca gccttgccag gcagtcctga catagaggag tgcgctctca
      601 acactagaca gtgccagctt tgcctccctt ccacaaaccc ctgggacccc aacatgggag
      661 tggtcaactt ccctcgaaag gccagccgca gacctcccag ggaggagtac tctgccacct
      721 gtgttgtaga gcagcccgga gccactgggg gtcccctcat cctcctggtg caaaggccta
      781 actcaggtct gctggcagga ctgtgggagt tcccgtctgt caccttggag ccctcaggac
      841 agcatcagca caaagcccta ctgcaggagc tgcagcactg gtctgcaccc ctccccacca
      901 ctcctctcca gcacctgggg gagtctcttc ctcccacccc ccaggtgatc catgtcttct
      961 ctcacatcaa actgacatat caggtataca gtctggctct cgaaggacag accccagcaa
     1021 gcaccacacc tcctggcgct cgatggttga cctgggagga attccgaaat gcagcggtgt
     1081 ctactgccat gaaaaaggtg ttccgcgtgt atgaggaaca tcggcaaggg acctgcaagg
     1141 gttccaaaag gccccaggtg tgtactccat caagccggaa aaaacccagc cggggacagc
     1201 aagtcctgga tcgtttcttt cagcgtcata tccccacaca caaacccaac agtactaccc
     1261 agtgataccc tgccattccc caccccaagt ccagtctaat aaaatgctta tttttgtagt
     1321 tcctttggag aa
//
