LOCUS       XM_039109205            1404 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mutY DNA glycosylase (Mutyh),
            transcript variant X6, mRNA.
ACCESSION   XM_039109205
VERSION     XM_039109205.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109205.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1404
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /note="mutY DNA glycosylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 36 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
     CDS             135..1337
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X4"
                     /protein_id="XP_038965133.1"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
                     /translation="MQKWPTLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVVEE
                     LGGHVPRTAETLQQLLPGVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVRAIGADPT
                     SSFVSHHLWDLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLCRAHQRV
                     GQGQLSALPGSPDIEECALNTRQCQLCLPSTNPWDPNMGVVNFPRKASRRPPREEYSA
                     TCVVEQPGATGGPLILLVQRPNSGLLAGLWEFPSVTLEPSGQHQHKALLQELQHWSAP
                     LPTTPLQHLGESLPPTPQVIHVFSHIKLTYQVYSLALEGQTPASTTPPGARWLTWEEF
                     RNAAVSTAMKKVFRVYEEHRQGTCKGSKRPQVCTPSSRKKPSRGQQVLDRFFQRHIPT
                     HKPNSTTQ"
ORIGIN      
        1 atatcacctc ttcagtgaca tagccgatgt cacagctttc cgaaggaacc tgctcagctg
       61 gtatgaccaa gagaagcgtg accttccttg gagaaaacgg gtaaaggagg aggccaactt
      121 ggacaggaga gcctatgcag aagtggccaa cgctacaaga cctggccagt gcttccctgg
      181 aggaggtgaa ccagctctgg tctggcctgg gctactattc tcgaggtcgt cggctccaag
      241 aaggagctag gaaggtggta gaggagctag gaggccacgt accacgtaca gcagagaccc
      301 tgcagcagct cctgcctggg gtggggcggt acacggctgg agccatcgct tctattgcct
      361 ttgaccaggt aaccggtgtg gtggatggga acgtcatacg ggtgctgtgc cgtgtccgcg
      421 ccattggtgc tgatcccacc agctcctttg tctctcatca tctctgggac ttagcccagc
      481 agctggtgga cccagcccgg cctggggatt tcaaccaagc agccatggag ctgggagcca
      541 cagtgtgtac cccacagcgc cctctctgca gccattgtcc tgtgcagagt ttatgccggg
      601 cacaccagag ggtgggacag ggacagctct cagccttgcc aggcagtcct gacatagagg
      661 agtgcgctct caacactaga cagtgccagc tttgcctccc ttccacaaac ccctgggacc
      721 ccaacatggg agtggtcaac ttccctcgaa aggccagccg cagacctccc agggaggagt
      781 actctgccac ctgtgttgta gagcagcccg gagccactgg gggtcccctc atcctcctgg
      841 tgcaaaggcc taactcaggt ctgctggcag gactgtggga gttcccgtct gtcaccttgg
      901 agccctcagg acagcatcag cacaaagccc tactgcagga gctgcagcac tggtctgcac
      961 ccctccccac cactcctctc cagcacctgg gggagtctct tcctcccacc ccccaggtga
     1021 tccatgtctt ctctcacatc aaactgacat atcaggtata cagtctggct ctcgaaggac
     1081 agaccccagc aagcaccaca cctcctggcg ctcgatggtt gacctgggag gaattccgaa
     1141 atgcagcggt gtctactgcc atgaaaaagg tgttccgcgt gtatgaggaa catcggcaag
     1201 ggacctgcaa gggttccaaa aggccccagg tgtgtactcc atcaagccgg aaaaaaccca
     1261 gccggggaca gcaagtcctg gatcgtttct ttcagcgtca tatccccaca cacaaaccca
     1321 acagtactac ccagtgatac cctgccattc cccaccccaa gtccagtcta ataaaatgct
     1381 tatttttgta gttcctttgg agaa
//
