LOCUS       XM_039109201            1876 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mutY DNA glycosylase (Mutyh),
            transcript variant X2, mRNA.
ACCESSION   XM_039109201
VERSION     XM_039109201.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109201.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1876
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /note="mutY DNA glycosylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 26 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
     CDS             238..1809
                     /gene="Mutyh"
                     /gene_synonym="Myh"
                     /codon_start=1
                     /product="adenine DNA glycosylase isoform X1"
                     /protein_id="XP_038965129.1"
                     /db_xref="GeneID:170841"
                     /db_xref="RGD:620045"
                     /translation="MKKLRASVRSHKKQPANHKRRGKCALSSSQAKPSGLDGLAKQKR
                     EELLKTPVSPYHLFSDIADVTAFRRNLLSWYDQEKRDLPWRKRVKEEANLDRRAYAVW
                     VSEVMLQQTQVATVIDYYTRWMQKWPTLQDLASASLEEVNQLWSGLGYYSRGRRLQEG
                     ARKVVEELGGHVPRTAETLQQLLPGVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVR
                     AIGADPTSSFVSHHLWDLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSL
                     CRAHQRVGQGQLSALPGSPDIEECALNTRQCQLCLPSTNPWDPNMGVVNFPRKASRRP
                     PREEYSATCVVEQPGATGGPLILLVQRPNSGLLAGLWEFPSVTLEPSGQHQHKALLQE
                     LQHWSAPLPTTPLQHLGESLPPTPQVIHVFSHIKLTYQVYSLALEGQTPASTTPPGAR
                     WLTWEEFRNAAVSTAMKKVFRVYEEHRQGTCKGSKRPQVCTPSSRKKPSRGQQVLDRF
                     FQRHIPTHKPNSTTQ"
ORIGIN      
        1 aacaacaaag ataggaactc aatggctggc ttcgaacttc tcttaaaaga attttaaaac
       61 aaggctgggt gcatgacatt aatctcatcg ttcaggaggc agaggcaggt agaactctga
      121 gttcaaggcc agcctggtga gctccagaac agccgggact gcacagagaa actctttgac
      181 tccaaacaac aacaacaaaa caatgtccac acctggagtg ctgggttata ggtcatcatg
      241 aagaagttac gagcatctgt aaggagtcac aagaagcaac cagccaacca caagagaagg
      301 ggaaaatgtg ctcttagcag cagccaggcc aaaccttctg gcctcgatgg cctggccaag
      361 cagaagagag aggagttact gaagacccct gtctctccat atcacctctt cagtgacata
      421 gccgatgtca cagctttccg aaggaacctg ctcagctggt atgaccaaga gaagcgtgac
      481 cttccttgga gaaaacgggt aaaggaggag gccaacttgg acaggagagc ctatgcagtc
      541 tgggtgtcag aggtcatgct gcagcagacc caagttgcca cagtgatcga ctattatacc
      601 cgatggatgc agaagtggcc aacgctacaa gacctggcca gtgcttccct ggaggaggtg
      661 aaccagctct ggtctggcct gggctactat tctcgaggtc gtcggctcca agaaggagct
      721 aggaaggtgg tagaggagct aggaggccac gtaccacgta cagcagagac cctgcagcag
      781 ctcctgcctg gggtggggcg gtacacggct ggagccatcg cttctattgc ctttgaccag
      841 gtaaccggtg tggtggatgg gaacgtcata cgggtgctgt gccgtgtccg cgccattggt
      901 gctgatccca ccagctcctt tgtctctcat catctctggg acttagccca gcagctggtg
      961 gacccagccc ggcctgggga tttcaaccaa gcagccatgg agctgggagc cacagtgtgt
     1021 accccacagc gccctctctg cagccattgt cctgtgcaga gtttatgccg ggcacaccag
     1081 agggtgggac agggacagct ctcagccttg ccaggcagtc ctgacataga ggagtgcgct
     1141 ctcaacacta gacagtgcca gctttgcctc ccttccacaa acccctggga ccccaacatg
     1201 ggagtggtca acttccctcg aaaggccagc cgcagacctc ccagggagga gtactctgcc
     1261 acctgtgttg tagagcagcc cggagccact gggggtcccc tcatcctcct ggtgcaaagg
     1321 cctaactcag gtctgctggc aggactgtgg gagttcccgt ctgtcacctt ggagccctca
     1381 ggacagcatc agcacaaagc cctactgcag gagctgcagc actggtctgc acccctcccc
     1441 accactcctc tccagcacct gggggagtct cttcctccca ccccccaggt gatccatgtc
     1501 ttctctcaca tcaaactgac atatcaggta tacagtctgg ctctcgaagg acagacccca
     1561 gcaagcacca cacctcctgg cgctcgatgg ttgacctggg aggaattccg aaatgcagcg
     1621 gtgtctactg ccatgaaaaa ggtgttccgc gtgtatgagg aacatcggca agggacctgc
     1681 aagggttcca aaaggcccca ggtgtgtact ccatcaagcc ggaaaaaacc cagccgggga
     1741 cagcaagtcc tggatcgttt ctttcagcgt catatcccca cacacaaacc caacagtact
     1801 acccagtgat accctgccat tccccacccc aagtccagtc taataaaatg cttatttttg
     1861 tagttccttt ggagaa
//
